BAC Information

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BAC

Clone NameB6Ng01-290L13
Chromosome3 (Build37)
Map Location 40,713,740 - 40,850,925
singlet/doubletdoublet
Overlap gene3110057O12Rik, Larp2
Upstream geneLOC100041458, LOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 1700034I23Rik
Downstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290L13.bB6Ng01-290L13.g
ACCGA087792GA087793
length1,0901,034
definitionB6Ng01-290L13.b B6Ng01-290L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,713,740 - 40,714,823)(40,849,889 - 40,850,925)
sequence
gaattcctttaacttgtattttattttgaaaattgcctgccagtgtgtga
attaaatctattattttccaactatactccagcatagaaggaaaacaaat
atttatgaaagtgtctgtaaaaaggcacaatggggctggagaattggctt
agtggttaagagcactggctgttcttccacaggtcctgagttcaattccc
cgcaaccacatggtggctcacaaccatctataataggatctgataccctc
cctctcccggtgtgtctgaagacaatgaaagtgtactctataataaaata
aatcttaaaaaaaaaaaaaaaaggacacaatggataattccctgctaggt
aaatataaatgaaggcgtttgaaagacgaagcatgaaatatttcagaaca
tatcagttacttagttactaaataaatatgaaactgtagatagtcttaaa
taaaaatatatattttggttaaaaaatgggtcaaaaaagaaaaaagtaag
caatgaaaaagttttggttctgaggatgttgcttagttgttgtaggtaaa
aatgatgctcatgtgcaagaactaagagaatgttagtgattagttgaata
gattttatttttatcagaaaaaaagtccatgatagccctctatcttagtc
tactttgtatacacctccattttcttttcctttaggttgaagaacagtca
gattgtaagatcctagatggacactttgtttctcccatggcccactatgt
gcctggtatcatgccaattgaatctgttgttgcaaggtaaggatctgttt
ggcaagtaagatgagtgagttgtgtctagcagtgcatgtaagtactgctt
atgcttacagagtgtggataatgccctcaacattcacactaggagattaa
ttgccctccatgcatagttagtgatatcaaggtgaggtgaaagcttaaga
aggtcaacaccattttttgtaaaattccagacatgccacagtcccataga
aatatttcccaaatgatgtagtcatataccagcctctgcctcatttctaa
gtagagtttgcccttttaatttcacttttaagtaggtgag
gaattccacagggcagaaacttatactgtcttggcatcttctgggacaag
agtcttccagcatcatctgcatggatgtatcttttcttgctctacatgtc
ctgagatgaaactttctatacctgtagctaagttctcttctgtatatatg
aagcttttctttcattttcaaacacatgggatctgattaacttttacctg
agtagatacttttttactttctagaagtaccaatggtttttagataccaa
agccagttactgtgagatagaacttcccatgtagttttaaattttggagc
agagtaacacccatcgcagtagcctataatggacatggtacttctcagct
ccaaagttccttccttcttactgctgctactgtgtcaaaaaaaactcaag
cacgatttaaaaataatatattttgtaaacggaaatagaaaagatgatgt
aaggattcacagaaatcaaaagatacttaatacaatttgattaaagcatg
ttttgaccaacccccccccttgttaaataacatagtgaacacaagccaaa
aatacacaaagcttcctcctccacagacatattcataaagagaaactcat
taactttccaggtttgacagcagctcacctctgtggggcttgaaccctgt
caagccgaggaaagctgacgatgtggaaatgggtgggtttggaatatcaa
tgtccatatgatcttttctggagtgctttatgctgccttgagaagagtct
ccatttaaaaccttctgttaaactaagctgacttgacaacccaaagcagt
aagacagggtggcatttcattgctgctgctaccactgtttctaagatgtg
cccagctctgctgtccctgaacttgggcagtcctcctgcctcagccccct
gagtcctaagattaaaagtgtggctaacacaccagtactaaatgggaggg
tgtattacactgatattctctctctatctctctctctctcatccccctcc
cttttctctccaccactcccttctgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40713740_40714823
seq2: B6Ng01-290L13.b_46_1135

seq1  GAATTCCTTTAACTTGTATTTTATTTTGAAAATTGCCTGCCAGTGTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAACTTGTATTTTATTTTGAAAATTGCCTGCCAGTGTGTGA  50

seq1  ATTAAATCTATTATTTTCCAACTATACTCCAGCATAGAAGGAAAACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCTATTATTTTCCAACTATACTCCAGCATAGAAGGAAAACAAAT  100

seq1  ATTTATGAAAGTGTCTGTAAAAAGGCACAATGGGGCTGGAGAATTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAAGTGTCTGTAAAAAGGCACAATGGGGCTGGAGAATTGGCTT  150

seq1  AGTGGTTAAGAGCACTGGCTGTTCTTCCACAGGTCCTGAGTTCAATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAGAGCACTGGCTGTTCTTCCACAGGTCCTGAGTTCAATTCCC  200

seq1  CGCAACCACATGGTGGCTCACAACCATCTATAATAGGATCTGATACCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACCACATGGTGGCTCACAACCATCTATAATAGGATCTGATACCCTC  250

seq1  CCTCTCCCGGTGTGTCTGAAGACAATGAAAGTGTACTCTATAATAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCGGTGTGTCTGAAGACAATGAAAGTGTACTCTATAATAAAATA  300

seq1  AATCTTAAAAAAAAAAAAAAAAGGACACAATGGATAATTCCCTGCTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAAAAAAAAAAAAAAGGACACAATGGATAATTCCCTGCTAGGT  350

seq1  AAATATAAATGAAGGCGTTTGAAAGACGAAGCATGAAATATTTCAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAATGAAGGCGTTTGAAAGACGAAGCATGAAATATTTCAGAACA  400

seq1  TATCAGTTACTTAGTTACTAAATAAATATGAAACTGTAGATAGTCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTACTTAGTTACTAAATAAATATGAAACTGTAGATAGTCTTAAA  450

seq1  TAAAAATATATATTTTGGTTAAAAAATGGGTCAAAAAAGAAAAAAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATATATTTTGGTTAAAAAATGGGTCAAAAAAGAAAAAAGTAAG  500

seq1  CAATGAAAAAGTTTTGGTTCTGAGGATGTTGCTTAGTTGTTGTAGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAAAGTTTTGGTTCTGAGGATGTTGCTTAGTTGTTGTAGGTAAA  550

seq1  AATGATGCTCATGTGCAAGAACTAAGAGAATGTTAGTGATTAGTTGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGCTCATGTGCAAGAACTAAGAGAATGTTAGTGATTAGTTGAATA  600

seq1  GATTTTATTTTTATCAGAAAAAAAGTCCATGATAGCCCTCTATCTTAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTTTTATCAGAAAAAAAGTCCATGATAGCCCTCTATCTTAGTC  650

seq1  TACTTTGTATACACCTCCATTTTCTTTTCCTTTAGGTTGAAGAACAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTATACACCTCCATTTTCTTTTCCTTTAGGTTGAAGAACAGTCA  700

seq1  GATTGTAAGATCCTAGATGGACACTTTGTTTCTCCCATGGCCCACTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAAGATCCTAGATGGACACTTTGTTTCTCCCATGGCCCACTATGT  750

seq1  GCCTGGTATCATGCCAATTGAATCTGTTGTTGCAAGGTAAGGATCTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTATCATGCCAATTGAATCTGTTGTTGCAAGGTAAGGATCTGTTT  800

seq1  GGCAAGTAAGATGAGTGAGTTGTGTCTAGCAGTGCATGTAAGTACTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTAAGATGAGTGAGTTGTGTCTAGCAGTGCATGTAAGTACTGCTT  850

seq1  ATGCTTACAGAGTGTGGATAATGCCCTCAACATTCACACTAGGAGATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACAGAGTGTGGATAATGCCCTCAACATTCACACTAGGAGATTAA  900

seq1  TTGCCCTCCATGCATAGTTAGTGATATCAAGGTGAGGTGAAAGCTTAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCCATGCATAGTTAGTGATATCAAGGTGAGGTGAAAGCTTAAGA  950

seq1  A-GTCAACACCA-TTTTTGTAAAAATTCAGACATG-CACAGTCCCATAGA  997
      | |||||||||| ||||||||||| | |||||||| ||||||||||||||
seq2  AGGTCAACACCATTTTTTGTAAAATTCCAGACATGCCACAGTCCCATAGA  1000

seq1  AATATTT-CCAAATGATTGTAGTCATATACCAG-CTCTG-CTCATTTCTA  1044
      ||||||| |||||||| |||||||||||||||| ||||| ||||||||||
seq2  AATATTTCCCAAATGA-TGTAGTCATATACCAGCCTCTGCCTCATTTCTA  1049

seq1  AGTAGAGTTTGCCTTTTAAATTTTCACTTTT-AGTA-GTGAG  1084
      ||||||||||||| ||| || |||||||||| |||| |||||
seq2  AGTAGAGTTTGCCCTTTTAA-TTTCACTTTTAAGTAGGTGAG  1090

seq1: chr3_40849889_40850925
seq2: B6Ng01-290L13.g_69_1102 (reverse)

seq1  ACACACACACAGA--GGAGT-GTGGAGGAGAAAAGGGAGGGGGATGGAGG  47
      |||||||||||||  ||||| ||||| |||||||||||||||||||   |
seq2  ACACACACACAGAAGGGAGTGGTGGA-GAGAAAAGGGAGGGGGATG--AG  47

seq1  AGAGAGAGAGATTAAGAGAGAGAATATCAGTGTAATACAACCCTCCCATT  97
      ||||||||||||  |||||||||||||||||||||||| |||||||||||
seq2  AGAGAGAGAGAT--AGAGAGAGAATATCAGTGTAATAC-ACCCTCCCATT  94

seq1  TAGTACTGGTGTGTTAGCCACACTTTTAATCTTAGGACTCAGGGGGCTGA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTGGTGTGTTAGCCACACTTTTAATCTTAGGACTCAGGGGGCTGA  144

seq1  GGCAGGAGGACTGCCCAAGTTCAGGGACAGCAGAGCTGGGCACATCTTAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGGACTGCCCAAGTTCAGGGACAGCAGAGCTGGGCACATCTTAG  194

seq1  AAACAGTGGTAGCAGCAGCAATGAAATGCCACCCTGTCTTACTGCTTTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGGTAGCAGCAGCAATGAAATGCCACCCTGTCTTACTGCTTTGG  244

seq1  GTTGTCAAGTCAGCTTAGTTTAACAGAAGGTTTTAAATGGAGACTCTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAAGTCAGCTTAGTTTAACAGAAGGTTTTAAATGGAGACTCTTCT  294

seq1  CAAGGCAGCATAAAGCACTCCAGAAAAGATCATATGGACATTGATATTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGCATAAAGCACTCCAGAAAAGATCATATGGACATTGATATTCC  344

seq1  AAACCCACCCATTTCCACATCGTCAGCTTTCCTCGGCTTGACAGGGTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACCCATTTCCACATCGTCAGCTTTCCTCGGCTTGACAGGGTTCA  394

seq1  AGCCCCACAGAGGTGAGCTGCTGTCAAACCTGGAAAGTTAATGAGTTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACAGAGGTGAGCTGCTGTCAAACCTGGAAAGTTAATGAGTTTCT  444

seq1  CTTTATGAATATGTCTGTGGAGGAGGAAGCTTTGTGTATTTTTGGCTTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGAATATGTCTGTGGAGGAGGAAGCTTTGTGTATTTTTGGCTTGT  494

seq1  GTTCACTATGTTATTTAACAAGGGGGGGGGTTGGTCAAAACATGCTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTATGTTATTTAACAAGGGGGGGGGTTGGTCAAAACATGCTTTAA  544

seq1  TCAAATTGTATTAAGTATCTTTTGATTTCTGTGAATCCTTACATCATCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGTATTAAGTATCTTTTGATTTCTGTGAATCCTTACATCATCTT  594

seq1  TTCTATTTCCGTTTACAAAATATATTATTTTTAAATCGTGCTTGAGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTCCGTTTACAAAATATATTATTTTTAAATCGTGCTTGAGTTTT  644

seq1  TTTTGACACAGTAGCAGCAGTAAGAAGGAAGGAACTTTGGAGCTGAGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACACAGTAGCAGCAGTAAGAAGGAAGGAACTTTGGAGCTGAGAAG  694

seq1  TACCATGTCCATTATAGGCTACTGCGATGGGTGTTACTCTGCTCCAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTCCATTATAGGCTACTGCGATGGGTGTTACTCTGCTCCAAAAT  744

seq1  TTAAAACTACATGGGAAGTTCTATCTCACAGTAACTGGCTTTGGTATCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTACATGGGAAGTTCTATCTCACAGTAACTGGCTTTGGTATCTA  794

seq1  AAAACCATTGGTACTTCTAGAAAGTAAAAAAGTATCTACTCAGGTAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTGGTACTTCTAGAAAGTAAAAAAGTATCTACTCAGGTAAAAG  844

seq1  TTAATCAGATCCCATGTGTTTGAAAATGAAAGAAAAGCTTCATATATACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGATCCCATGTGTTTGAAAATGAAAGAAAAGCTTCATATATACA  894

seq1  GAAGAGAACTTAGCTACAGGTATAGAAAGTTTCATCTCAGGACATGTAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAACTTAGCTACAGGTATAGAAAGTTTCATCTCAGGACATGTAGA  944

seq1  GCAAGAAAAGATACATCCATGCAGATGATGCTGGAAGACTCTTGTCCCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAAGATACATCCATGCAGATGATGCTGGAAGACTCTTGTCCCAG  994

seq1  AAGATGCCAAGACAGTATAAGTTTCTGCCCTGTGGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCAAGACAGTATAAGTTTCTGCCCTGTGGAATTC  1034