BAC Information

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BAC

Clone NameB6Ng01-291B17
Chromosome3 (Build37)
Map Location 34,754,777 - 34,755,862
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291B17.bB6Ng01-291B17.g
ACCGA088083GA088084
length1,0891,178
definitionB6Ng01-291B17.b B6Ng01-291B17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaaatataattgaccttctcctaaccaccgaggtgagtattgt
ggcttccatcttggcaataaaggaactgtggtttagagaggctgtgacta
cacataggaagttttcaggactccagagtcttcctgggctgtctggcatc
ctggacatcccatgggtccacatagttgtcatacactagtagagccttat
tgcttcctgtgacatactctgggtaccagagcttccccatgggatgaggt
ggaggttcatttgagccgagatcgcatcttgctcagcatctctcttctca
ctgcaacttgttttgctttatccacacttgcttatgaatccccatctcat
gctctgttctctaaggcactatgagcatcagatgtgtccctagaatgtgg
ttattgctctctgggtatctgtgacagaggaggacatgctctataggata
gattggctgtcagagtgctgtgcctagacaccaacagtggcagcaatgat
gatttcgctattactcagcatggtgtgagtcaagtgcccagatcttcctg
ctcaaatatggcgaattactactgtgtttttgcataaggaagatgggaga
aaacatattactgccaataaccacacaaagatcacaagtgacaccattgg
gatagatagctgagtttgccttcacagctctaacatctaggttgtgatta
ttagaatgtagaactgaacaaagaggcagcttgctagactgtttgcttca
taattattattctgctcaggttggaaggataactacactaacagagttat
agccagtaagattaggccatcctgtctccatcttaggcttgaaagccttt
ttagagcaaagacaaattagggtcattcctgtttatgattcaatccattt
ttctccgggcagtggtggtgcacccctttaatcctagcacttgggaggca
gaggcaggagatttctgagtttgaggccagcctggttctacagagtgagt
tccaggacgcccagggcgaatacagagaaaccctgtcctcgaaaacaaaa
acaaaaaacagagagagaggaagagagagcaggagggag

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcagcatcgttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tgcatctcacaccagtcagaatagctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtgggtaaagagaaacactcctccattgttggtg
ggattgcaagcttgtacaatcactctggagatcagtctggcggttcctca
gaaaattggacatagtactaccgaaggatcctgcaaaacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccacttt
gttcatagcagccttatttataacagccagaagctggaaagaacccagat
ccccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcttcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttagtatacccaaggtataagatacaatttgctaaacgcatgaaactcaa
gaagaacgaagaccaaattgtggacactttgcccccttcttagaattgga
aacaaaacacccatggaaggagttacagagacaaagttttggagctgtga
cgaaaggatggaccatctacagtctgccatatccggggatccatcctata
atcagcttccaaacgctgacaccattgtatacactaacaagattttgctg
aaaggacccagatatagctgtctcttatgagtctatgctggggcctagca
aacacagaagtggatgcttcccagttcacctattgggatggatcacaggg
ccccccaatggaaggagctagagaaaggtacccaaggagcttaaagggat
tctgccaccccctatagggtggaacaacattatgaactaaccagtaccaa
cagagctctgactctaagcttcgtatgttatcaaagatgggcctagttcg
gccatcatggaaagagaaggtcctattggactggccaacttttaatggct
ctgatgcagggcgaacgctccaggtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34754777_34755862
seq2: B6Ng01-291B17.b_48_1136

seq1  GAATTCAGAAATATAATTGACCTTCTCCTAACCACCGAGGTGAGTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATATAATTGACCTTCTCCTAACCACCGAGGTGAGTATTGT  50

seq1  GGCTTCCATCTTGGCAATAAAGGAACTGTGGTTTAGAGAGGCTGTGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCATCTTGGCAATAAAGGAACTGTGGTTTAGAGAGGCTGTGACTA  100

seq1  CACATAGGAAGTTTTCAGGACTCCAGAGTCTTCCTGGGCTGTCTGGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGAAGTTTTCAGGACTCCAGAGTCTTCCTGGGCTGTCTGGCATC  150

seq1  CTGGACATCCCATGGGTCCACATAGTTGTCATACACTAGTAGAGCCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATCCCATGGGTCCACATAGTTGTCATACACTAGTAGAGCCTTAT  200

seq1  TGCTTCCTGTGACATACTCTGGGTACCAGAGCTTCCCCATGGGATGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGTGACATACTCTGGGTACCAGAGCTTCCCCATGGGATGAGGT  250

seq1  GGAGGTTCATTTGAGCCGAGATCGCATCTTGCTCAGCATCTCTCTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTCATTTGAGCCGAGATCGCATCTTGCTCAGCATCTCTCTTCTCA  300

seq1  CTGCAACTTGTTTTGCTTTATCCACACTTGCTTATGAATCCCCATCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTTGTTTTGCTTTATCCACACTTGCTTATGAATCCCCATCTCAT  350

seq1  GCTCTGTTCTCTAAGGCACTATGAGCATCAGATGTGTCCCTAGAATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTCTCTAAGGCACTATGAGCATCAGATGTGTCCCTAGAATGTGG  400

seq1  TTATTGCTCTCTGGGTATCTGTGACAGAGGAGGACATGCTCTATAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTCTCTGGGTATCTGTGACAGAGGAGGACATGCTCTATAGGATA  450

seq1  GATTGGCTGTCAGAGTGCTGTGCCTAGACACCAACAGTGGCAGCAATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTGTCAGAGTGCTGTGCCTAGACACCAACAGTGGCAGCAATGAT  500

seq1  GATTTCGCTATTACTCAGCATGGTGTGAGTCAAGTGCCCAGATCTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCGCTATTACTCAGCATGGTGTGAGTCAAGTGCCCAGATCTTCCTG  550

seq1  CTCAAATATGGCGAATTACTACTGTGTTTTTGCATAAGGAAGATGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATGGCGAATTACTACTGTGTTTTTGCATAAGGAAGATGGGAGA  600

seq1  AAACATATTACTGCCAATAACCACACAAAGATCACAAGTGACACCATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTACTGCCAATAACCACACAAAGATCACAAGTGACACCATTGG  650

seq1  GATAGATAGCTGAGTTTGCCTTCACAGCTCTAACATCTAGGTTGTGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGCTGAGTTTGCCTTCACAGCTCTAACATCTAGGTTGTGATTA  700

seq1  TTAGAATGTAGAACTGAACAAAGAGGCAGCTTGCTAGACTGTTTGCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTAGAACTGAACAAAGAGGCAGCTTGCTAGACTGTTTGCTTCA  750

seq1  TAATTATTATTCTGCTCAGGTTGGAAGGATAACTACACTAACAGAGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTATTCTGCTCAGGTTGGAAGGATAACTACACTAACAGAGTTAT  800

seq1  AGCCAGTAAGATTA-GCCATCCTGTCTCCATCTTAGGCTTGAAAGCCTTT  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCCAGTAAGATTAGGCCATCCTGTCTCCATCTTAGGCTTGAAAGCCTTT  850

seq1  TTAGAGCAAAGACAAATTAGGGTCATTCCTGTTTATGATTCAATCCATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCAAAGACAAATTAGGGTCATTCCTGTTTATGATTCAATCCATTT  900

seq1  TTCTCCGGGCAGTGGTGGTGCACCCCTTTAATCCTAGCACTTGGGAGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGGGCAGTGGTGGTGCACCCCTTTAATCCTAGCACTTGGGAGGCA  950

seq1  GAGGCAGGAGGATTTCTGAGTTTGAGGCCAGCCTGG-TCTACAGAGTGAG  998
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  GAGGCAGGA-GATTTCTGAGTTTGAGGCCAGCCTGGTTCTACAGAGTGAG  999

seq1  TTCCAGGACGGCCAGGGCG-ATACAGAGAAACCCTGT-CTCGAAAAACAA  1046
      |||||||||| |||||||| ||||||||||||||||| ||||||||   |
seq2  TTCCAGGACGCCCAGGGCGAATACAGAGAAACCCTGTCCTCGAAAA--CA  1047

seq1  AAAACAAAAAAACAAGAGAGAG--AGAGAGAGAGAGAGGGAG  1086
      |||||||||||   ||||||||  ||||||||   |||||||
seq2  AAAACAAAAAACAGAGAGAGAGGAAGAGAGAGCAGGAGGGAG  1089


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