BAC Information

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BAC

Clone NameB6Ng01-291C20
Chromosome3 (Build37)
Map Location 77,469,799 - 77,660,502
singlet/doubletdoublet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291C20.bB6Ng01-291C20.g
ACCGA088133GA088134
length1,1051,132
definitionB6Ng01-291C20.b B6Ng01-291C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,469,799 - 77,470,910)(77,659,355 - 77,660,502)
sequence
caggacagccaggactatacagagaaaccctgtctcgaaaaaaccaaaaa
aaaaaataaaaaataaaataaaataataataatattggagttgcctttga
aatttaattggtatttgtgaatgcaactttttcgcttataatgtacatgg
ctaactcttgactagcaaataaatatttgctaaagataattttcatggta
aaacagaattgtataaaatttacaatgtgtgtgatgatttatcccagttt
gtcagtgtcaagactgatggtaagcaatggaaaatgaatgaatgaatgaa
taaataaataaataaataaataaaggataagcacaatgtacaacaaaaaa
cagaaattttgaaagaaaggaaaaataaaacatgaaaatatgagtataca
ataaaaaacttacaaagatgaaaaatactatatcaaccacaaaataaact
aaaatataaatgatataaatttggagattaaaagttagaaatggaaaaac
tatattaaagtatcccatgcattttcctcaacaaaccatattgaaatata
aaatgacaagtttaaaatggtcaagtaacttccaccatgctgtgggacca
tctgtgctgtgggtgctgtagagttggacctacttcctccagcatgcagc
atcgctttctgcagttgatggtttctgatggaggtacagatggaaggaag
actcaccttcccatggatggctgaccactcagagtttggcggtgctccaa
caagtaaatggacaatgaaaaatggacttttttgtgtgtggacaaaacaa
agcaaagcagacatgggaggatttggaggtgagtgtgattggaatgcatt
attcaagatgtaatcaataagaaaaaagaaaaaaaaaaggacagaagagc
aatggtagccagccataatcctcccaagtaaatcctactctatgctagtt
agcagtgctttatttttctttctactctatttgaagaagcattatccttc
aaaccaatttctaagtcaaacacttcaattttcttacaggagagagtcaa
ctcaagtttcttgtcattcacaatacaatacagaaccctaggctgcaaac
accat

gaattcatggaaatgtgccaagaaaaaaaatctaatccatcagcagattt
taatatttatttcaactgtaaaggaaacattaagcatagaaccaaaaatg
acatttaaaattttaagtattatgaagtattaaattcaagtattgaacaa
aataaaaactattaaattattcaaacattggtattttaagaaacttgttt
tatttgttgtgactcaccccaaacttattcttaaaactgctgagttctgt
atccaggcctttgcaattcttgtcacctgcttcagggtttcataaacttt
ttctcagacaatcatcatttgctgccatgtagaaactcaaaacatgttgc
ttgcttttattatttaataatctctgcaaaatatatcagatgacatttcc
taccccatatccagtcttaggtagtaatgtgtacattataaatacacaaa
tagatgataaaactagatatgcaaatatgtcttaaaattgtggatgtatt
atatacatatatatgatggtataatgaacacacacacacacacacacaca
tacacacacatgtctgtatttaacttaatgtccataggtcattttatcta
atcctctctctttgcttcatgagtatgaaataaaatttgccttggttgtt
ttattcttaaaaaatattattttgtaataataaaagaacatactatagag
caactggcactaaattatactcattattgcagggtgaccacaaaatagca
tgaatatttaaaacctttatcttcattttggaagtgtaatatttgtaaat
ggagagtgaagcaatatatgtcatgcattttgaaatgggatagcaaaaga
gtcgacagcaatggtcctttcagaagaggtaatatattaacaactaaaga
ataaagcaaaatttcagtaagcatttctagaatgtacagtggaactgata
tcctttggccaaaatgttttaggagacaatgtaatactctataacaaaca
cacttttcagttttctagtgttcatatttcaagggagtatctaccatctc
tgtcagtttcagtgtgtgaaccttacctagaattgtagaaaataaataga
aaattgttctcgtgcattgaatgtcatagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77469799_77470910
seq2: B6Ng01-291C20.b_56_1160

seq1  CAGGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAACCAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAAACCAAAAA  50

seq1  AAAAAATAAAAAATAAAATAAAATAATAATAATATTGGAGTTGCCTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAAATAAAATAAAATAATAATAATATTGGAGTTGCCTTTGA  100

seq1  AATTTAATTGGTATTTGTGAATGCAACTTTTTCGCTTATAATGTACATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTGGTATTTGTGAATGCAACTTTTTCGCTTATAATGTACATGG  150

seq1  CTAACTCTTGACTAGCAAATAAATATTTGCTAAAGATAATTTTCATGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTTGACTAGCAAATAAATATTTGCTAAAGATAATTTTCATGGTA  200

seq1  AAACAGAATTGTATAAAATTTACAATGTGTGTGATGATTTATCCCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATTGTATAAAATTTACAATGTGTGTGATGATTTATCCCAGTTT  250

seq1  GTCAGTGTCAAGACTGATGGTAAGCAATGGAAAATGAATGAATGAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTCAAGACTGATGGTAAGCAATGGAAAATGAATGAATGAATGAA  300

seq1  TAAATAAATAAATAAATAAATAAAGGATAAGCACAATGTACAACAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAAGGATAAGCACAATGTACAACAAAAAA  350

seq1  CAGAAATTTTGAAAGAAAGGAAAAATAAAACATGAAAATATGAGTATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTTTGAAAGAAAGGAAAAATAAAACATGAAAATATGAGTATACA  400

seq1  ATAAAAAACTTACAAAGATGAAAAATACTATATCAACCACAAAATAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAACTTACAAAGATGAAAAATACTATATCAACCACAAAATAAACT  450

seq1  AAAATATAAATGATATAAATTTGGAGATTAAAAGTTAGAAATGGAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAATGATATAAATTTGGAGATTAAAAGTTAGAAATGGAAAAAC  500

seq1  TATATTAAAGTATCCCATGCATTTTCCTCAACAAACCATATTGAAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAAGTATCCCATGCATTTTCCTCAACAAACCATATTGAAATATA  550

seq1  AAATGACAAGTTTAAAATGGTCAAGTAACTTCCACCATGCTGTGGGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAGTTTAAAATGGTCAAGTAACTTCCACCATGCTGTGGGACCA  600

seq1  TCTGTGCTGTGGGTGCTGTAGAGTTGGACCTACTTCCTCCAGCATGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGTGGGTGCTGTAGAGTTGGACCTACTTCCTCCAGCATGCAGC  650

seq1  ATCGCTTTCTGCAGTTGATGGTTTCTGATGGAGGTACAGATGGAAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTTCTGCAGTTGATGGTTTCTGATGGAGGTACAGATGGAAGGAAG  700

seq1  ACTCACCTTCCCATGGATGGCTGACCACTCAGAGTTTGGCGGTGCTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTTCCCATGGATGGCTGACCACTCAGAGTTTGGCGGTGCTCCAA  750

seq1  CAAGTAAATGGACAATGAAAAATGGACTTTTTTGTGTGTGGACAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAATGGACAATGAAAAATGGACTTTTTTGTGTGTGGACAAAACAA  800

seq1  AGCAAAGCAGACATGGGAGGATTTGGAGGTGAGTGTGATTGGAATGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCAGACATGGGAGGATTTGGAGGTGAGTGTGATTGGAATGCATT  850

seq1  ATTCAAGATGTAATCAATAAGAAAAAAGAAAAAAAAAAGGACAGAAGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGATGTAATCAATAAGAAAAAAGAAAAAAAAAAGGACAGAAGAGC  900

seq1  AATGGTAGCCAGCCATAATCCTCCCAAGTAAATCCTACTCTATGCTAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGCCAGCCATAATCCTCCCAAGTAAATCCTACTCTATGCTAGTT  950

seq1  AGCAGTGCTTTA-TTTTCTTTCTTACTCTATTTTGAAGAAGCATTATCCT  999
      |||||||||||| ||||||||| ||||||| |||||||||||||||||||
seq2  AGCAGTGCTTTATTTTTCTTTC-TACTCTA-TTTGAAGAAGCATTATCCT  998

seq1  TCAAACC-ATTTCTAAGTCAAACACTTCAATTTTCTTTACCAGAGAGAGT  1048
      ||||||| ||||||||||||||||||||||||||| ||||  ||||||||
seq2  TCAAACCAATTTCTAAGTCAAACACTTCAATTTTC-TTACAGGAGAGAGT  1047

seq1  CAACTCAAAGTTTC-TGTCATTCACCAATACAATACAAGAACCCCTAAAG  1097
      |||||| ||||||| ||||||||| ||||||||||| |||| |||||   
seq2  CAACTC-AAGTTTCTTGTCATTCA-CAATACAATAC-AGAA-CCCTA---  1090

seq1  GGCTGGAAACACCAT  1112
      ||||| |||||||||
seq2  GGCTGCAAACACCAT  1105


seq1: chr3_77659355_77660502
seq2: B6Ng01-291C20.g_67_1198 (reverse)

seq1  GTACTATGGAACATTTTAAATGCACCGAG-ACAATTTTCTATTTATTTTC  49
      ||||||||  |||  || |||||| |||| ||||||||||||||||||||
seq2  GTACTATG--ACA--TTCAATGCA-CGAGAACAATTTTCTATTTATTTTC  45

seq1  TAACAATTCTAAGGGTTAAGTTCACACACTTGAAACTGACAGAGGATGGT  99
      | |||||||||  ||| | |||||||||| ||||||||||||| ||||| 
seq2  T-ACAATTCTA--GGTAAGGTTCACACAC-TGAAACTGACAGA-GATGG-  89

seq1  TAGATAACTCCCTTGAAATATGAACACTAAGAAAACTG-AAAGTGTTGTT  148
      ||||| |||||||||||||||||||||| ||||||||| |||||| ||||
seq2  TAGAT-ACTCCCTTGAAATATGAACACT-AGAAAACTGAAAAGTG-TGTT  136

seq1  TTGTATAGAGTAATTACATTTGTCTTCCTAAAACATTTTGGCCAAAGGAT  198
      |  |||||||| |||||| ||||| |||||||||||||||||||||||||
seq2  TGTTATAGAGT-ATTACA-TTGTC-TCCTAAAACATTTTGGCCAAAGGAT  183

seq1  ATCAGTTTCCACTGTACATTCTAGAAATGCTTACTGAAATTTTGCTTTAT  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAG-TTCCACTGTACATTCTAGAAATGCTTACTGAAATTTTGCTTTAT  232

seq1  TCTTTAGTTGTTAATATATTACCTCTTCTGAAAGGACCATTGCTGTCGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTTGTTAATATATTACCTCTTCTGAAAGGACCATTGCTGTCGAC  282

seq1  TCTTTTGCTATCCCATTTCAAAATGCATGACATATATTGCTTCACTCTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTATCCCATTTCAAAATGCATGACATATATTGCTTCACTCTCC  332

seq1  ATTTACAAATATTACACTTCCAAAATGAAGATAAAGGTTTTAAATATTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAATATTACACTTCCAAAATGAAGATAAAGGTTTTAAATATTCA  382

seq1  TGCTATTTTGTGGTCACCCTGCAATAATGAGTATAATTTAGTGCCAGTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTTGTGGTCACCCTGCAATAATGAGTATAATTTAGTGCCAGTTG  432

seq1  CTCTATAGTATGTTCTTTTATTATTACAAAATAATATTTTTTAAGAATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGTATGTTCTTTTATTATTACAAAATAATATTTTTTAAGAATAA  482

seq1  AACAACCAAGGCAAATTTTATTTCATACTCATGAAGCAAAGAGAGAGGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAAGGCAAATTTTATTTCATACTCATGAAGCAAAGAGAGAGGAT  532

seq1  TAGATAAAATGACCTATGGACATTAAGTTAAATACAGACATGTGTGTGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAATGACCTATGGACATTAAGTTAAATACAGACATGTGTGTGTA  582

seq1  TGTGTGTGTGTGTGTGTGTGTGTTCATTATACCATCATATATATGTATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTTCATTATACCATCATATATATGTATAT  632

seq1  AATACATCCACAATTTTAAGACATATTTGCATATCTAGTTTTATCATCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCCACAATTTTAAGACATATTTGCATATCTAGTTTTATCATCTA  682

seq1  TTTGTGTATTTATAATGTACACATTACTACCTAAGACTGGATATGGGGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTATTTATAATGTACACATTACTACCTAAGACTGGATATGGGGTA  732

seq1  GGAAATGTCATCTGATATATTTTGCAGAGATTATTAAATAATAAAAGCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTCATCTGATATATTTTGCAGAGATTATTAAATAATAAAAGCAA  782

seq1  GCAACATGTTTTGAGTTTCTACATGGCAGCAAATGATGATTGTCTGAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGTTTTGAGTTTCTACATGGCAGCAAATGATGATTGTCTGAGAA  832

seq1  AAAGTTTATGAAACCCTGAAGCAGGTGACAAGAATTGCAAAGGCCTGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTATGAAACCCTGAAGCAGGTGACAAGAATTGCAAAGGCCTGGAT  882

seq1  ACAGAACTCAGCAGTTTTAAGAATAAGTTTGGGGTGAGTCACAACAAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTCAGCAGTTTTAAGAATAAGTTTGGGGTGAGTCACAACAAATA  932

seq1  AAACAAGTTTCTTAAAATACCAATGTTTGAATAATTTAATAGTTTTTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTTTCTTAAAATACCAATGTTTGAATAATTTAATAGTTTTTATT  982

seq1  TTGTTCAATACTTGAATTTAATACTTCATAATACTTAAAATTTTAAATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAATACTTGAATTTAATACTTCATAATACTTAAAATTTTAAATGT  1032

seq1  CATTTTTGGTTCTATGCTTAATGTTTCCTTTACAGTTGAAATAAATATTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGGTTCTATGCTTAATGTTTCCTTTACAGTTGAAATAAATATTA  1082

seq1  AAATCTGCTGATGGATTAGATTTTTTTTCTTGGCACATTTCCATGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCTGATGGATTAGATTTTTTTTCTTGGCACATTTCCATGAATTC  1132


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