BAC Information

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BAC

Clone NameB6Ng01-291H13
Chromosome3 (Build37)
Map Location 48,884,311 - 48,885,294
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666208, 1700018B24Rik, LOC100039404
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291H13.bB6Ng01-291H13.g
ACCGA088345GA088346
length1,1481,204
definitionB6Ng01-291H13.b B6Ng01-291H13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagatcagccctcccctgttaagtacagatgataaggtagttg
ggtggaccctgccctgaaattaccatttctacaccacctgggcctaacct
taccaagtgcttggctgaccttggactcagtaatctgccctgcctgcctt
tgtatttttctgacatgttgcctcatgaatgcaactgccttcgttccttt
agattcatgaatgccctagtaattcctattaaatctttatattttgcata
gttgagaaattatatattttgaacccacgtatatagagtgctttcccata
gcctttaagggtcccaacatttaccattttgctgagacattagtcacata
tttgcctcctgtacctgtgctgtctgattatcatgaagtcattaatgtta
acagagaggatattccttggaggaatgtgaaaatatttacattattagac
aaacaggccttacacctacagcagctatctaactttgtggaggttcacat
agggaccccatcccagaggcaagaaccatgtcactgtcaccaccatggtt
acaccaggcttggcatctcctgagggctcacaccagggccttgtcccagg
gactggaaccatgtctctatctcactctttcctcactaggcccaggccag
gctaagcagaagttggagatgtgagaaagagagagaatcagagacagagg
cacacacacagagaatacaaggacccagaatgatcagaatgaacaaaagt
tattttagctttaacaacgaagactctaacagaagtaagacattgtgtta
ttgaatacagtcatatgccatatagaattactgtggtcagtgatgcactg
tgtagagaacggggctttataacatcatgattctcgaggaacttcaggca
tgcacagagatatacttgtctatgtaaggaacagtggtggtacagattca
tgtgctgtgctgtacatatgctgtgttttaaagctgactctgtctacata
ggatagtagttctagtaaaatatataccatgatcaagtggcagtatctca
catatgctggtgcttaccacttctcatgcatcatttttcttggtgcttca
ttcatggtgttttgtcatttgtggaacacacccaaccacgacacacac

gaattcaaagaatctatttcaaaagtctatatgaaacaaaattggaaaag
ctaaatgtaaaggatcatttttcaagaaagatactacgcatcactaatca
aagttctaaatattcctaaaaatgctaaggaaacagaagcaatcattaaa
agtctcccaactggaggtgggggaaaggggtactcatgggcagatgattt
taatgcagaattctaccagactatctagaacagctaatatcaatacttct
caaactattacacaaaatggacagaagaaatattaccaaactcattatat
gaggctatggtcaccctgagacaaagaaaaaaaaaaagcccaaagactaa
aaagaaaatcttagacaaaattttgtatgaacattgctgcaaaagtagtc
ataaaatacttacaaactgaatctagaactacatcaaaacatcctccacc
atggctaaataagcttcatcccagggatgcaggagtggattaaaatacaa
aagtccatcaaagtaatctatcataaagaaacaaactgatggaaaaaaac
cattattatctcattagatgaagaaaagcctttgacacaattcaacacca
cttcatgttaaaaagtctttgagagatcagggatacaagacaagtaccta
aacacagtaaaggcaatatagagcaagccaacatcaaatcaaaatttaaa
tgattaaatgaaaaccaaccaaccaaccaaccaaccaaccaacaaacaca
caataagatcttagagaaactccactagaatacgagacaaggttgcccac
cctcttcctatctcttccatgtagcacttgaaataataggtggaaaaata
agagaactaaaggagaccaagggaatacaaactggagaggaagaagtcaa
aatactgctacttgcacatattatagtatacatatgtgacctcaaaaatc
ctatcagaagaacctcctacagctgaaaaacacctttcagtgaagtggat
gaataaaaaaattaatgcaaagaaattattattgctcctttttatacaaa
aatagatgaggagagtcaggagacaagcgcccagggcccaaagatatcat
agtaaatgctcattttatcaagcaatgatagattccatgcattacataaa
atattcccacacctttgttacatacccttgaatataaggtattcccattc
cgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48884311_48885294
seq2: B6Ng01-291H13.b_204_1192

seq1  CTGACATGTTGCCTCATGAATGCAACTGCCTTCGTTCCTTTAGATTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGTTGCCTCATGAATGCAACTGCCTTCGTTCCTTTAGATTCATG  50

seq1  AATGCCCTAGTAATTCCTATTAAATCTTTATATTTTGCATAGTTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTAGTAATTCCTATTAAATCTTTATATTTTGCATAGTTGAGAAA  100

seq1  TTATATATTTTGAACCCACGTATATAGAGTGCTTTCCCATAGCCTTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTTTGAACCCACGTATATAGAGTGCTTTCCCATAGCCTTTAAG  150

seq1  GGTCCCAACATTTACCATTTTGCTGAGACATTAGTCACATATTTGCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAACATTTACCATTTTGCTGAGACATTAGTCACATATTTGCCTCC  200

seq1  TGTACCTGTGCTGTCTGATTATCATGAAGTCATTAATGTTAACAGAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGTGCTGTCTGATTATCATGAAGTCATTAATGTTAACAGAGAGG  250

seq1  ATATTCCTTGGAGGAATGTGAAAATATTTACATTATTAGACAAACAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTTGGAGGAATGTGAAAATATTTACATTATTAGACAAACAGGCC  300

seq1  TTACACCTACAGCAGCTATCTAACTTTGTGGAGGTTCACATAGGGACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCTACAGCAGCTATCTAACTTTGTGGAGGTTCACATAGGGACCCC  350

seq1  ATCCCAGAGGCAAGAACCATGTCACTGTCACCACCATGGTTACACCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAGGCAAGAACCATGTCACTGTCACCACCATGGTTACACCAGGC  400

seq1  TTGGCATCTCCTGAGGGCTCACACCAGGGCCTTGTCCCAGGGACTGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCTCCTGAGGGCTCACACCAGGGCCTTGTCCCAGGGACTGGAAC  450

seq1  CATGTCTCTATCTCACTCTTTCCTCACTAGGCCCAGGCCAGGCTAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCTATCTCACTCTTTCCTCACTAGGCCCAGGCCAGGCTAAGCAG  500

seq1  AAGTTGGAGATGTGAGAAAGAGAGAGAATCAGAGACAGAGGCACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAGATGTGAGAAAGAGAGAGAATCAGAGACAGAGGCACACACAC  550

seq1  AGAGAATACAAGGACCCAGAATGATCAGAATGAACAAAAGTTATTTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATACAAGGACCCAGAATGATCAGAATGAACAAAAGTTATTTTAGC  600

seq1  TTTAACAACGAAGACTCTAACAGAAGTAAGACATTGTGTTATTGAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAACGAAGACTCTAACAGAAGTAAGACATTGTGTTATTGAATACA  650

seq1  GTCATATGCCATATAGAATTACTGTGGTCAGTGATGCACTGTGTAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGCCATATAGAATTACTGTGGTCAGTGATGCACTGTGTAGAGAA  700

seq1  CGGGGCTTTATAACATCATGATTCTCGAGGAACTTCAGGCATGCACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTTTATAACATCATGATTCTCGAGGAACTTCAGGCATGCACAGAG  750

seq1  ATAATACTTGTCTATGTAAAGAACAGTGGTGGTACAGATTCATGTGCTGT  800
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AT-ATACTTGTCTATGTAAGGAACAGTGGTGGTACAGATTCATGTGCTGT  799

seq1  GCTGTACATATGCTGTGTTTTAAAGCTGACTCTGTCTACATAGGATAAGT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTGTACATATGCTGTGTTTTAAAGCTGACTCTGTCTACATAGGAT-AGT  848

seq1  AGTTCTTAGTAAAATATATACCATGATCAAGTGGCAGTATCTCACATATG  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTC-TAGTAAAATATATACCATGATCAAGTGGCAGTATCTCACATATG  897

seq1  CT-GTGCTTACCACTTCTCATTGCATCA-TTTTCTT-GTGCTTTCATTTC  947
      || ||||||||||||||||| ||||||| ||||||| |||| |||| |||
seq2  CTGGTGCTTACCACTTCTCA-TGCATCATTTTTCTTGGTGC-TTCA-TTC  944

seq1  ATGGTGTTTTGTCCTTTGTGG-ACACACAC-------ACACACAC  984
      ||||||||||||| ||||||| |||||| |       ||||||||
seq2  ATGGTGTTTTGTCATTTGTGGAACACACCCAACCACGACACACAC  989


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