BAC Information

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BAC

Clone NameB6Ng01-291L15
Chromosome3 (Build37)
Map Location 56,835,579 - 56,958,394
singlet/doubletdoublet
Overlap geneLOC666585
Upstream geneLOC100040139
Downstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291L15.bB6Ng01-291L15.g
ACCGA088541GA088542
length1,1911,115
definitionB6Ng01-291L15.b B6Ng01-291L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,957,199 - 56,958,394)(56,835,579 - 56,836,708)
sequence
gaattctactcacttatgagttcagctgcttttcaacaaatggccttcat
cctttgtttgaccacaggggtgctgttgctgccaaatgagagtttcacag
ctaaaatgaagagattggattttttggaaaaaatttttacatgcttttac
acacttgccttttccagatattaccaaatatattgtgtatattggccttt
gttaagtgcaggaattataacatttatgtaatctggaaatacactctaaa
ttcttcatgagaatataggatacttatgaatcagttcatatgctggccat
acagaagggaaatactggctcccaggggtatatattttgtcttcctcatt
cagatcagaatcaatctttctttctttctttcctcctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttcttttattcaacgttttagaccttaattttcaatcaatctagacagt
tttctaatcaatataggatatcagacataaactttgtggttttcataatc
aaaagtaatgaatcattattattttgtatgattatacaaaagtgattaaa
ttattcccagcgactgaaagggagcagctgcatgtctgaatgagaggatt
ctgtgagggcgaaaccattgtcatgaaaattttggctttttagacccagc
tcttctgggtgtctcctgtctgcatcctctgccctgcaaagaccttctta
aatcccatgcccatggccagctgaagatttaaaggtgcagctcccagctg
ttttcactgagactcagacactaaagagagttgttttcggttcctataaa
aacagaaaggaaaaagagaaagccatggtctctcttctttgatttatatt
ctattggaacccctccctctctcttcacaaaattcactgtagttttttgg
tgacagaaaacagatgtgtctgagaagaagtggtcacacagaatcagatg
ttgcctttggggaaacatctcaatcagcagcaatctgagtcttgactaaa
tgaattgtgggtgatggaagctattgtcacatactccctatagagttcac
taaagttcagtgatgaggtcactagaccattacaggcaacaatgttccca
tgttcaaggatcaccacccaataatggcattatggtcaatg

gaattctttcgattcaaataaaatgttcctctgtgctgttcgtgtttaca
tttaggcattcaaccccgaatcttgcctccatgcacactatctgatcctc
agagaccatttctaacccttgttgttttgttgtttatcagctggagctca
acattcattgttttattccttgtcaaagattttcaagaacggtttgtata
aagaggatatggaagtgatgtaggtaaatgagctaaatacctaataaaaa
atggaaaaaaaaggaagtgatgtaggatattttgactttaaataaatcta
aataaattagttgtcttgataaattaatttttgatagtagtgagaatgac
tctcccatgaaaccattgtcactttccgtaaatctggagtgggtatgcgg
tacacatctttaatgtcagcacttatgcagagaagggaagatttctgtga
gttcgagtctgaccctcatagtgagtacttgaactagtgccttcacattc
ctcaataaaggatcactacctgaaagtataagccaaatagattttgtact
cacatgagtttaatagtcaatctaataatgctactgataattgtatgctt
ttaccataggtggagagaccatgaacatgatgttgtgtctgtgtatgcat
actttgtttgtaagcatgtctgagcaccaaatacatgtctgatacttgag
gaggccagaagagggacttgaatcctctgaaagtggagttgcagatggtt
gtgaactgccatatgtgtgctagatatcaaacctgagtccactggaagag
tagccatctctccagccccacataagggtgttcttatgaggaaggaaatc
agggtatcagactttccactagtaaatcatttctaaaagcaaccattttg
cagagtccccaagaatatatttctgtgtttgtttaattctgctttcctta
catatcaccaagctttctgaaggcaagtagatgctgaagccatgaatggt
cctccacggtgacagcatattgagataggtggacacatcactcctgtgat
gccagtcacatacactctacaactatgtactttggtcaagtctcagtcta
tggccctggaattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_56957199_56958394
seq2: B6Ng01-291L15.b_48_1238 (reverse)

seq1  CATTGACCATAATGCCATTATGTGGTGTGTGAACCTGTGAACATGTGGAC  50
      |||||||||||||||||||||  |||| |||| ||| |||||||| | ||
seq2  CATTGACCATAATGCCATTATTGGGTG-GTGATCCT-TGAACATGGGAAC  48

seq1  ATTTGTTGCCTGTAAATGGTCTTAGTGA-CTCATCACTGACTTTTAGTGA  99
      | ||||||||||| ||||||| |||||| |||||||||||  ||||||||
seq2  A-TTGTTGCCTGT-AATGGTC-TAGTGACCTCATCACTGAACTTTAGTGA  95

seq1  AACCTCTATAGGGAGTATGTGACAATAGCTTTCATCACCCACATTTCATT  149
      |  |||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  A--CTCTATAGGGAGTATGTGACAATAGCTTCCATCACCCACAATTCATT  143

seq1  TAGTCAAGACTCAGATGGCTGCTGATTGAGATGTTTCCCCCAAGGCAACA  199
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TAGTCAAGACTCAGATTGCTGCTGATTGAGATGTTTCCCCAAAGGCAACA  193

seq1  TCTGATTCTGTGTGACCCACTCTTCTCAGACACATCTG-TTTCTGTCACC  248
      |||||||||||||||||   |||||||||||||||||| |||||||||||
seq2  TCTGATTCTGTGTGACCACTTCTTCTCAGACACATCTGTTTTCTGTCACC  243

seq1  AAAAAACTACAGTGAATTTTGTGAAGAGAGAGGGAGGGGTTCCAATAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTACAGTGAATTTTGTGAAGAGAGAGGGAGGGGTTCCAATAGAA  293

seq1  TATAAATCAAAGAAGAGAGACCATGGCTTTCTCTTTTTCCTTTCTGTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCAAAGAAGAGAGACCATGGCTTTCTCTTTTTCCTTTCTGTTTT  343

seq1  TATAGGAACCGAAAACAACTCTCTTTAGTGTCTGAGTCTCAGTGAAAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAACCGAAAACAACTCTCTTTAGTGTCTGAGTCTCAGTGAAAACA  393

seq1  GCTGGGAGCTGCACCTTTAAATCTTCAGCTGGCCATGGGCATGGGATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGCTGCACCTTTAAATCTTCAGCTGGCCATGGGCATGGGATTTA  443

seq1  AGAAGGTCTTTGCAGGGCAGAGGATGCAGACAGGAGACACCCAGAAGAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTCTTTGCAGGGCAGAGGATGCAGACAGGAGACACCCAGAAGAGC  493

seq1  TGGGTCTAAAAAGCCAAAATTTTCATGACAATGGTTTCGCCCTCACAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTAAAAAGCCAAAATTTTCATGACAATGGTTTCGCCCTCACAGAA  543

seq1  TCCTCTCATTCAGACATGCAGCTGCTCCCTTTCAGTCGCTGGGAATAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCATTCAGACATGCAGCTGCTCCCTTTCAGTCGCTGGGAATAATT  593

seq1  TAATCACTTTTGTATAATCATACAAAATAATAATGATTCATTACTTTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTTTTGTATAATCATACAAAATAATAATGATTCATTACTTTTGA  643

seq1  TTATGAAAACCACAAAGTTTATGTCTGATATCCTATATTGATTAGAAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAACCACAAAGTTTATGTCTGATATCCTATATTGATTAGAAAAC  693

seq1  TGTCTAGATTGATTGAAAATTAAGGTCTAAAACGTTGAATAAAAGAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGATTGATTGAAAATTAAGGTCTAAAACGTTGAATAAAAGAAAGA  743

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  793

seq1  GAAAGAAAGAAAGGAGGAAAGAAAGAAAGAAAGATTGATTCTGATCTGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGGAGGAAAGAAAGAAAGAAAGATTGATTCTGATCTGAA  843

seq1  TGAGGAAGACAAAATATATACCCCTGGGAGCCAGTATTTCCCTTCTGTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGACAAAATATATACCCCTGGGAGCCAGTATTTCCCTTCTGTAT  893

seq1  GGCCAGCATATGAACTGATTCATAAGTATCCTATATTCTCATGAAGAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCATATGAACTGATTCATAAGTATCCTATATTCTCATGAAGAATT  943

seq1  TAGAGTGTATTTCCAGATTACATAAATGTTATAATTCCTGCACTTAACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTATTTCCAGATTACATAAATGTTATAATTCCTGCACTTAACAA  993

seq1  AGGCCAATATACACAATATATTTGGTAATATCTGGAAAAGGCAAGTGTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAATATACACAATATATTTGGTAATATCTGGAAAAGGCAAGTGTGT  1043

seq1  AAAAGCATGTAAAAATTTTTTCCAAAAAATCCAATCTCTTCATTTTAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATGTAAAAATTTTTTCCAAAAAATCCAATCTCTTCATTTTAGCT  1093

seq1  GTGAAACTCTCATTTGGCAGCAACAGCACCCCTGTGGTCAAACAAAGGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTCTCATTTGGCAGCAACAGCACCCCTGTGGTCAAACAAAGGAT  1143

seq1  GAAGGCCATTTGTTGAAAAGCAGCTGAACTCATAAGTGAGTAGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCATTTGTTGAAAAGCAGCTGAACTCATAAGTGAGTAGAATTC  1191


seq1: chr3_56835579_56836708
seq2: B6Ng01-291L15.g_67_1181

seq1  GAATTCTTTCGATTCAAATAAAATGTTCCTCTGTGCTGTTCGTGTTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCGATTCAAATAAAATGTTCCTCTGTGCTGTTCGTGTTTACA  50

seq1  TTTAGGCATTCAACCCCGAATCTTGCCTCCATGCACACTATCTGATCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCATTCAACCCCGAATCTTGCCTCCATGCACACTATCTGATCCTC  100

seq1  AGAGACCATTTCTAACCCTTGTTGTTTTGTTGTTTATCAGCTGGAGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCATTTCTAACCCTTGTTGTTTTGTTGTTTATCAGCTGGAGCTCA  150

seq1  ACATTCATTGTTTTATTCCTTGTCAAAGATTTTCAAGAACGGTTTGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATTGTTTTATTCCTTGTCAAAGATTTTCAAGAACGGTTTGTATA  200

seq1  AAGAGGATATGGAAGTGATGTAGGTAAATGAGCTAAATACCTAATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATATGGAAGTGATGTAGGTAAATGAGCTAAATACCTAATAAAAA  250

seq1  ATGGAAAAAAAAGGAAGTGATGTAGGATATTTTGACTTTAAATAAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAAAAGGAAGTGATGTAGGATATTTTGACTTTAAATAAATCTA  300

seq1  AATAAATTAGTTGTCTTGATAAATTAATTTTTGATAGTAGTGAGAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAGTTGTCTTGATAAATTAATTTTTGATAGTAGTGAGAATGAC  350

seq1  TCTCCCATGAAACCATTGTCACTTTCCGTAAATCTGGAGTGGGTATGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATGAAACCATTGTCACTTTCCGTAAATCTGGAGTGGGTATGCGG  400

seq1  TACACATCTTTAATGTCAGCACTTATGCAGAGAAGGGAAGATTTCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCTTTAATGTCAGCACTTATGCAGAGAAGGGAAGATTTCTGTGA  450

seq1  GTTCGAGTCTGACCCTCATAGTGAGTACTTGAACTAGTGCCTTCACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGTCTGACCCTCATAGTGAGTACTTGAACTAGTGCCTTCACATTC  500

seq1  CTCAATAAAGGATCACTACCTGAAAGTATAAGCCAAATAGATTTTGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAAAGGATCACTACCTGAAAGTATAAGCCAAATAGATTTTGTACT  550

seq1  CACATGAGTTTAATAGTCAATCTAATAATGCTACTGATAATTGTATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGTTTAATAGTCAATCTAATAATGCTACTGATAATTGTATGCTT  600

seq1  TTACCATAGGTGGAGAGACCATGAACATGATGTTGTGTCTGTGTATGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATAGGTGGAGAGACCATGAACATGATGTTGTGTCTGTGTATGCAT  650

seq1  ACTTTGTTTGTAAGCATGTCTGAGCACCAAATACATGTCTGATACTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTGTAAGCATGTCTGAGCACCAAATACATGTCTGATACTTGAG  700

seq1  GAGGCCAGAAGAGGGACTTGAATCCTCTGAAAGTGGAGTTGCAGATGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGAAGAGGGACTTGAATCCTCTGAAAGTGGAGTTGCAGATGGTT  750

seq1  GTGAACTGCCATATGTGTGCTAGATATCAAACCTGAGTCCACTGGAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTGCCATATGTGTGCTAGATATCAAACCTGAGTCCACTGGAAGAG  800

seq1  TAGCCATCTCTCCAGCCCCACATAAGGGTGTTCTTATGAGGAAGGAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATCTCTCCAGCCCCACATAAGGGTGTTCTTATGAGGAAGGAAATC  850

seq1  AGGGTATCAGACTTTCCACTAGTAAATCATTTCTAAAAGCAACCATTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATCAGACTTTCCACTAGTAAATCATTTCTAAAAGCAACCATTTTG  900

seq1  CAGAGTCCCCAAGAATATATTTCTGTGTTTGTTT-ATTCTGCTTTCTTTA  949
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  CAGAGTCCCCAAGAATATATTTCTGTGTTTGTTTAATTCTGCTTTCCTTA  950

seq1  CATATCA-CAAGCTTTCTGAAGGCAAGTAGGATGCTGAAGCCATGAATTG  998
      ||||||| ||||||||||||||||||||| ||||||||||||||||| ||
seq2  CATATCACCAAGCTTTCTGAAGGCAAGTA-GATGCTGAAGCCATGAA-TG  998

seq1  GTCCTCCACGGTGACAAGCATATTGGAGATAGGGTTGACACATCCACTTC  1048
      ||||||||||||||| |||||||| |||||| ||| ||||||| ||||  
seq2  GTCCTCCACGGTGAC-AGCATATT-GAGATA-GGTGGACACAT-CACT--  1042

seq1  CTTGTGATGCCCAGTCACATTACAACCTCTACAAACTATGTACCTTTGGT  1098
      | ||||||| ||||||||| ||||  |||||| ||||||||| |||||||
seq2  CCTGTGATG-CCAGTCACA-TACA--CTCTAC-AACTATGTA-CTTTGGT  1086

seq1  CAAGTCTCCATGTTCTATGGGCCTGGATTTCT  1130
      ||||||||     ||||||| |||||| ||||
seq2  CAAGTCTC---AGTCTATGGCCCTGGAATTCT  1115


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