BAC Information

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BAC

Clone NameB6Ng01-292C05
Chromosome3 (Build37)
Map Location 46,833,706 - 47,011,969
singlet/doubletdoublet
Overlap geneLOC545517, LOC383849
Upstream geneEG241989
Downstream geneLOC383850, LOC100039426, LOC666202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292C05.bB6Ng01-292C05.g
ACCGA088851GA088852
length1,1651,095
definitionB6Ng01-292C05.b B6Ng01-292C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,010,808 - 47,011,969)(46,833,706 - 46,834,803)
sequence
gaattcccatattaaataggacataactgcttctaactatgaagtatata
tgctttaatttgatgatatgatgatatatttaaaaaatatacatagttat
atttttaaatgattattttgtgatagagacaaatccgataatttattttt
aggaatataatctaagttttccaattcagttgcaagccaacaattcaaat
gcaagccatcttgtaaacaataattttatactttgcacaagtattttctt
tctgtatatatattaaacatatggtagctatttaatatcaggaaactttt
cacgtattagaacaatatttccatatttaatgcatgttttcatattcatt
aaccatcatcctctttctgtaattttggcaaatacactttatattcatct
ctaatgcattgcaacaaattaaaaaggggtggaagtctcctgacttaatc
aagaaataatctcatcagagatgtacattttatataatttgatcgtgatt
tgctttctagaaacctgaccatcaaacccagctgaaaactgacaaggaga
tggggtgatccatatcaaagttgtttctgagcagttatactggagtaggt
tttcaaggcagctgctggatcaaagcacttattcttccctggattgtaac
acaaagcaacatcaaataacttagctgtgctggtttggctctcttgtatg
ctttgaactagggggataatagtcttactaaggctttgtgtcctggagta
aaattatgagtggttcccctggattgtgttgaaaagactcatgaatagtt
gaagaatcatagatgaaagtcctttgctttcactactggtgaacttctgg
taatcttgaggcttttgcatttggaaatatatagaaaatatttctggtca
ccagtttcagttaggaaatatattttaaacatattcaaacaataaaaatt
ttacacaaactatatttacatgtgggtttatttgtcttctacattgaaat
aagtgactctatactagtcagcacattgactgataaattatgaaaaacat
tactatgttaataggagatttgatttagcttcatatatatttatatatta
ttatatctttttcctccacacccaagcattagagagtactagttttctga
ttttcgtgttatatt

gaattctttgaagcaagtcaaaccagatgaaaaaggaagaaatgcaggta
atgaacatgaatttcaaataatataaaggtaaatgtgtttctcattatct
ttgtatgaatttttttggaggagcacatggtgaataattggacaaaatac
agtcaatgctgaaagtgtaaaagttaatttggagccccgtggcttctttt
cctgtggtccattctaaccttgtagaagttcaccaaattataaaggacta
gggtctgattaattgtgatggacatactttttatttattttgtgatatat
tatgatatttgtttacaaagttaaaaacatgaaaaattatctaatattta
tattatacttcaaagaaattttcaacagttgataattcatcttatcataa
agaataagcaattttcagtcaagaaatgctaccagaggagaatctcttca
atagagagtagaaaacaatagaaaaacaagctacatcttagcttttcaat
gcacagctgtaagtacctcgctgtaagaagatagcgcccaccatacacac
acaaaaagaacccaaaatacggtttaagatccactcttattaaacgagaa
gaaaatatgatgggtgggatctcaacaacaactaaaaaaattaaatatca
ataaaatttatagagaattgaacgaatcataatttcactttaatgctaaa
atggaggaacagcagaaagaaaaacagtgtaacacactattagctgaaac
atacttagtcacgaaaagtaaccctttatgcattataaaaatgattctaa
tgaaggactagaattcctgcattatttctttgacaatgactgatacaagt
actttaacaaaggttggagtttcagagctgcaagcgtaaaaatgggccct
ttcaaaatatagactacaatgcaaataactgtgttcatttgtcttgttct
gccactcagtctttagagattcttagagaataaaagctcagatttcaagt
cacatttcagcttaggaattcttcaaagatgtcaaagttttctaatgttc
agaacaatattaggttcatttcctgaatgttaatcaatgctgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47010808_47011969
seq2: B6Ng01-292C05.b_48_1212 (reverse)

seq1  AATATAACACG-AAATCAGAAAACTAGT-TACTCTAATGCTT-GGTGTGG  47
      ||||||||||| ||||||||||||||||   ||||||||||| |||||||
seq2  AATATAACACGAAAATCAGAAAACTAGTACTCTCTAATGCTTGGGTGTGG  50

seq1  AGAAAAGAATATATATATATATATATATATATATAAAGCTAAATCAAATC  97
      || ||| || |||||   ||||||| |||||||| |||||||||||||||
seq2  AGGAAA-AAGATATAATAATATATAAATATATATGAAGCTAAATCAAATC  99

seq1  TCCCTATT-ACATAGTAATGTTTTTCATATTTTATCAGTCAATGTGCTGA  146
      | |||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  T-CCTATTAACATAGTAATGTTTTTCATAATTTATCAGTCAATGTGCTGA  148

seq1  CTAGTATAGAGTCACTTATTTCAATGTAGAAGACAAATAAA-CCACATGT  195
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAGTATAGAGTCACTTATTTCAATGTAGAAGACAAATAAACCCACATGT  198

seq1  AAATATAGTTTGTGTAAAATTTTTATTGTTTGAATATGTTTAAAATATAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGTTTGTGTAAAATTTTTATTGTTTGAATATGTTTAAAATATAT  248

seq1  TTCCTAACTGAAACTGGTGACCAGAAATATTTTCTATATATTTCCAAATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTGAAACTGGTGACCAGAAATATTTTCTATATATTTCCAAATG  298

seq1  CAAAAGCCTCAAGATTACCAGAAGTTCACCAGTAGTGAAAGCAAAGGACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCTCAAGATTACCAGAAGTTCACCAGTAGTGAAAGCAAAGGACT  348

seq1  TTCATCTATGATTCTTCAACTATTCATGAGTCTTTTCAACACAATCCAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTATGATTCTTCAACTATTCATGAGTCTTTTCAACACAATCCAGG  398

seq1  GGAACCACTCATAATTTTACTCCAGGACACAAAGCCTTAGTAAGACTATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCACTCATAATTTTACTCCAGGACACAAAGCCTTAGTAAGACTATT  448

seq1  ATCCCCCTAGTTCAAAGCATACAAGAGAGCCAAACCAGCACAGCTAAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCTAGTTCAAAGCATACAAGAGAGCCAAACCAGCACAGCTAAGTT  498

seq1  ATTTGATGTTGCTTTGTGTTACAATCCAGGGAAGAATAAGTGCTTTGATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGTTGCTTTGTGTTACAATCCAGGGAAGAATAAGTGCTTTGATC  548

seq1  CAGCAGCTGCCTTGAAAACCTACTCCAGTATAACTGCTCAGAAACAACTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGCCTTGAAAACCTACTCCAGTATAACTGCTCAGAAACAACTT  598

seq1  TGATATGGATCACCCCATCTCCTTGTCAGTTTTCAGCTGGGTTTGATGGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGATCACCCCATCTCCTTGTCAGTTTTCAGCTGGGTTTGATGGT  648

seq1  CAGGTTTCTAGAAAGCAAATCACGATCAAATTATATAAAATGTACATCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCTAGAAAGCAAATCACGATCAAATTATATAAAATGTACATCTC  698

seq1  TGATGAGATTATTTCTTGATTAAGTCAGGAGACTTCCACCCCTTTTTAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGATTATTTCTTGATTAAGTCAGGAGACTTCCACCCCTTTTTAAT  748

seq1  TTGTTGCAATGCATTAGAGATGAATATAAAGTGTATTTGCCAAAATTACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCAATGCATTAGAGATGAATATAAAGTGTATTTGCCAAAATTACA  798

seq1  GAAAGAGGATGATGGTTAATGAATATGAAAACATGCATTAAATATGGAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGATGATGGTTAATGAATATGAAAACATGCATTAAATATGGAAA  848

seq1  TATTGTTCTAATACGTGAAAAGTTTCCTGATATTAAATAGCTACCATATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCTAATACGTGAAAAGTTTCCTGATATTAAATAGCTACCATATG  898

seq1  TTTAATATATATACAGAAAGAAAATACTTGTGCAAAGTATAAAATTATTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATATATACAGAAAGAAAATACTTGTGCAAAGTATAAAATTATTG  948

seq1  TTTACAAGATGGCTTGCATTTGAATTGTTGGCTTGCAACTGAATTGGAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGATGGCTTGCATTTGAATTGTTGGCTTGCAACTGAATTGGAAA  998

seq1  ACTTAGATTATATTCCTAAAAATAAATTATCGGATTTGTCTCTATCACAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGATTATATTCCTAAAAATAAATTATCGGATTTGTCTCTATCACAA  1048

seq1  AATAATCATTTAAAAATATAACTATGTATATTTTTTAAATATATCATCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCATTTAAAAATATAACTATGTATATTTTTTAAATATATCATCAT  1098

seq1  ATCATCAAATTAAAGCATATATACTTCATAGTTAGAAGCAGTTATGTCCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAATTAAAGCATATATACTTCATAGTTAGAAGCAGTTATGTCCT  1148

seq1  ATTTAATATGGGAATTC  1162
      |||||||||||||||||
seq2  ATTTAATATGGGAATTC  1165


seq1: chr3_46833706_46834803
seq2: B6Ng01-292C05.g_64_1158

seq1  GAATTCTTTGAAGCAAGTCAAACCAGATGAAAAAGGAAGAAATGCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAAGCAAGTCAAACCAGATGAAAAAGGAAGAAATGCAGGTA  50

seq1  ATGAACATGAATTTCAAATAATATAAAGGTAAATGTGTTTCTCATTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATGAATTTCAAATAATATAAAGGTAAATGTGTTTCTCATTATCT  100

seq1  TTGTATGAATTTTTTTGGAGGAGCACATGGTGAATAATTGGACAAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAATTTTTTTGGAGGAGCACATGGTGAATAATTGGACAAAATAC  150

seq1  AGTCAATGCTGAAAGTGTAAAAGTTAATTTGGAGCCCCGTGGCTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGCTGAAAGTGTAAAAGTTAATTTGGAGCCCCGTGGCTTCTTTT  200

seq1  CCTGTGGTCCATTCTAACCTTGTAGAAGTTCACCAAATTATAAAGGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTCCATTCTAACCTTGTAGAAGTTCACCAAATTATAAAGGACTA  250

seq1  GGGTCTGATTAATTGTGATGGACATACTTTTTATTTATTTTGTGATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGATTAATTGTGATGGACATACTTTTTATTTATTTTGTGATATAT  300

seq1  TATGATATTTGTTTACAAAGTTAAAAACATGAAAAATTATCTAATATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATTTGTTTACAAAGTTAAAAACATGAAAAATTATCTAATATTTA  350

seq1  TATTATACTTCAAAGAAATTTTCAACAGTTGATAATTCATCTTATCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACTTCAAAGAAATTTTCAACAGTTGATAATTCATCTTATCATAA  400

seq1  AGAATAAGCAATTTTCAGTCAAGAAATGCTACCAGAGGAGAATCTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGCAATTTTCAGTCAAGAAATGCTACCAGAGGAGAATCTCTTCA  450

seq1  ATAGAGAGTAGAAAACAATAGAAAAACAAGCTACATCTTAGCTTTTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGTAGAAAACAATAGAAAAACAAGCTACATCTTAGCTTTTCAAT  500

seq1  GCACAGCTGTAAGTACCTCGCTGTAAGAAGATAGCGCCCACCATACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTGTAAGTACCTCGCTGTAAGAAGATAGCGCCCACCATACACAC  550

seq1  ACAAAAAGAACCCAAAATACGGTTTAAGATCCACTCTTATTAAACGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGAACCCAAAATACGGTTTAAGATCCACTCTTATTAAACGAGAA  600

seq1  GAAAATATGATGGGTGGGATCTCAACAACAACTAAAAAAATTAAATATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGATGGGTGGGATCTCAACAACAACTAAAAAAATTAAATATCA  650

seq1  ATAAAATTTATAGAGAATTGAACGAATCATAATTTCACTTTAATGCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTATAGAGAATTGAACGAATCATAATTTCACTTTAATGCTAAA  700

seq1  ATGGAGGAACAGCAGAAAGAAAAACAGTGTAACACACTATTAGCTGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAACAGCAGAAAGAAAAACAGTGTAACACACTATTAGCTGAAAC  750

seq1  ATACTTAGTCACGAAAAGTAACCCTTTATGCATTATAAAAATGATTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGTCACGAAAAGTAACCCTTTATGCATTATAAAAATGATTCTAA  800

seq1  TGAAGGACTAGAATTCCTGCATTATTTCTTTGACAATGACTGATACAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACTAGAATTCCTGCATTATTTCTTTGACAATGACTGATACAAGT  850

seq1  ACTTTAACAAAGGTTGGAGTTTCAGAGCTGCAAGCGTAAAAATGGG-CCT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTTAACAAAGGTTGGAGTTTCAGAGCTGCAAGCGTAAAAATGGGCCCT  900

seq1  TTCAAAATATAGACTACAATGCAAATAACTGTGTTCATTTGTCTTGTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATATAGACTACAATGCAAATAACTGTGTTCATTTGTCTTGTTCT  950

seq1  GCCACTCAGTCTTTAGAGATTCTTAGAAGAATAAAAGCTCAGATTTCAAG  999
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  GCCACTCAGTCTTTAGAGATTCTTAG-AGAATAAAAGCTCAGATTTCAA-  998

seq1  GTCAACATTTCAGCTTAGGAATTC-TCAAAGATGTCAAAAGTTTTCT-AT  1047
      ||| |||||||||||||||||||| ||||||||||| |||||||||| ||
seq2  GTC-ACATTTCAGCTTAGGAATTCTTCAAAGATGTC-AAAGTTTTCTAAT  1046

seq1  G-TCAG-ACAATATTAAGGTTTCATTTCTTG-ATGTTAATTCAAATTGCT  1094
      | |||| |||||||||  | |||||||| || ||||||| ||||  ||||
seq2  GTTCAGAACAATATTA--GGTTCATTTCCTGAATGTTAA-TCAA--TGCT  1091

seq1  GAAT  1098
      ||||
seq2  GAAT  1095


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