BAC Information

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BAC

Clone NameB6Ng01-292D12
Chromosome1 (Build37)3 (Build37)
Map Location 112,800,686 - 112,801,411104,348,978 - 104,349,584
singlet/doubletsingletsinglet
Overlap geneCdh19
Upstream geneCdh7, LOC100041429, EG626652
Downstream geneEG666578, Dsel, LOC547247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292D12.bB6Ng01-292D12.g
ACCGA088913GA088914
length978814
definitionB6Ng01-292D12.b B6Ng01-292D12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,800,686 - 112,801,411)(104,348,978 - 104,349,584)
sequence
gaattctattgctttcaccacctacttcaatcccttcctattgttacatc
tttttggccgtttccttgtatgctgataagcagtgggtatgacttgctgt
agacttgttctttgccaaattaatacttaagtgcaggttcagacaatagg
aaatatttccactcttcttttttaaacccactaatgatttcagagcttat
ttcatgaggggaaaaaatgttggtatctgtagactcccataagcctgaag
caggctaagccagaatttgaccttgttgccactaaggagattatctaggg
tggagcctttctccctagatcactctattgttctaccaaagcccctgttc
ctcttcaagatactgtgacatgctgagaggccccggagctattctggaga
ctatgccctattctgcatgtgctggttccaggctccaaggatgaaatgtt
gggaatggactttccccactcttttataaagtgtgtccaccattaaaatt
ttgaaccttgagcagactaattgtcttggttccattatttctcaacccgc
ctaggctccctcttttcttccagattccaagatgccttccaggctcgaac
acggacatgagagctgcaggccggccccaacaaattggtgcctaatatgg
ggctcgaacccatgaccctgggattaagagtcccatgctctatggactga
gctagccaggcagctacgatttaattaccattgattataattgataacaa
ctataaaagctttctttaatttctgcaaggccttttgttctttgccagtt
aatttgtgtctcacttagtagcacctgacaaaagctcaagttctcctgtg
gtgagtttaaaggtgagggttttagccaattaacattcctggaagctttt
gaaaataaaattttgaagcaaataaaatttttctttcttagacttttctg
gaccacgattttcaagtatagctaaaaa
gaattccaatgatattgccttttttgggattctgggcaaatcaatattca
caaacatcttcagtgaagtgaggcagggctattcctcactgtggctttta
tcaaaactgagtagaaatggtgactttgcagtccctggaagggtggcaca
ggcacttgtcctctaaactgccttgaaggtgggggtgggggtggggaagt
ttaaagctagacaggaagatagtttcaaagttcaggggtagaagcagaat
gatcttgagtgtaaagccatcctcgggtataaatgagatcatagtctcta
aataaagccagaatggtgtttcagccagtgcgatggctcagcgggcagag
gtgctgaccaccaagcctgaagccctgagcttgagcctgaggtcccataa
gacagaaggagagaacggatccttcaattgtcctctgattttcacccaag
caccatcgagccatcatcccaaccacatcaaacagagcagtaacagcaaa
acagcccagtctgagactctctcccagtacttcctgctctaacacaaagg
acacttcttgtccccatttatcacataggccaaaaacagcataattatcc
aaaaaaaaaaaaaaaaaccctcaaatttctccaaaaggcataattttcaa
ggcaatgaaatccatttgagcccctgcattatcagtcctgtgttaaatac
ttgggggattttaaagagaagttacagggggccatttgttcttcactgaa
gcacttgtactttgggtgggtggggtggaagtctcaaggggaattaagtt
aaataacttcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112800686_112801411
seq2: B6Ng01-292D12.b_45_770

seq1  GAATTCTATTGCTTTCACCACCTACTTCAATCCCTTCCTATTGTTACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGCTTTCACCACCTACTTCAATCCCTTCCTATTGTTACATC  50

seq1  TTTTTGGCCGTTTCCTTGTATGCTGATAAGCAGTGGGTATGACTTGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCCGTTTCCTTGTATGCTGATAAGCAGTGGGTATGACTTGCTGT  100

seq1  AGACTTGTTCTTTGCCAAATTAATACTTAAGTGCAGGTTCAGACAATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTTCTTTGCCAAATTAATACTTAAGTGCAGGTTCAGACAATAGG  150

seq1  AAATATTTCCACTCTTCTTTTTTAAACCCACTAATGATTTCAGAGCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCCACTCTTCTTTTTTAAACCCACTAATGATTTCAGAGCTTAT  200

seq1  TTCATGAGGGGAAAAAATGTTGGTATCTGTAGACTCCCATAAGCCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGGGGAAAAAATGTTGGTATCTGTAGACTCCCATAAGCCTGAAG  250

seq1  CAGGCTAAGCCAGAATTTGACCTTGTTGCCACTAAGGAGATTATCTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAAGCCAGAATTTGACCTTGTTGCCACTAAGGAGATTATCTAGGG  300

seq1  TGGAGCCTTTCTCCCTAGATCACTCTATTGTTCTACCAAAGCCCCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTTTCTCCCTAGATCACTCTATTGTTCTACCAAAGCCCCTGTTC  350

seq1  CTCTTCAAGATACTGTGACATGCTGAGAGGCCCCGGAGCTATTCTGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAGATACTGTGACATGCTGAGAGGCCCCGGAGCTATTCTGGAGA  400

seq1  CTATGCCCTATTCTGCATGTGCTGGTTCCAGGCTCCAAGGATGAAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCTATTCTGCATGTGCTGGTTCCAGGCTCCAAGGATGAAATGTT  450

seq1  GGGAATGGACTTTCCCCACTCTTTTATAAAGTGTGTCCACCATTAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGACTTTCCCCACTCTTTTATAAAGTGTGTCCACCATTAAAATT  500

seq1  TTGAACCTTGAGCAGACTAATTGTCTTGGTTCCATTATTTCTCAACCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTTGAGCAGACTAATTGTCTTGGTTCCATTATTTCTCAACCCGC  550

seq1  CTAGGCTCCCTCTTTTCTTCCAGATTCCAAGATGCCTTCCAGGCTCGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCCCTCTTTTCTTCCAGATTCCAAGATGCCTTCCAGGCTCGAAC  600

seq1  ACGGACATGAGAGCTGCAGGCCGGCCCCAACAAATTGGTGCCTAATATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACATGAGAGCTGCAGGCCGGCCCCAACAAATTGGTGCCTAATATGG  650

seq1  GGCTCGAACCCATGACCCTGGGATTAAGAGTCCCATGCTCTATGGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGAACCCATGACCCTGGGATTAAGAGTCCCATGCTCTATGGACTGA  700

seq1  GCTAGCCAGGCAGCTACGATTTAATT  726
      ||||||||||||||||||||||||||
seq2  GCTAGCCAGGCAGCTACGATTTAATT  726

seq1: chr3_104348978_104349584
seq2: B6Ng01-292D12.g_261_877

seq1  AGTTTAAAGCTAGACAGGAAGATAGTTTCAAAGTTCAGGGGTAGAAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGCTAGACAGGAAGATAGTTTCAAAGTTCAGGGGTAGAAGCAG  50

seq1  AATGATCTTGAGTGTAAAGCCATCCTCGGGTATAAATGAGATCATAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTTGAGTGTAAAGCCATCCTCGGGTATAAATGAGATCATAGTCT  100

seq1  CTAAATAAAGCCAGAATGGTGTTTCAGCCAGTGCGATGGCTCAGCGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAAGCCAGAATGGTGTTTCAGCCAGTGCGATGGCTCAGCGGGCA  150

seq1  GAGGTGCTGACCACCAAGCCTGAAGCCCTGAGCTTGAGCCTGAGGTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTGACCACCAAGCCTGAAGCCCTGAGCTTGAGCCTGAGGTCCCA  200

seq1  TAAGACAGAAGGAGAGAACGGATCCTTCAATTGTCCTCTGATTTTCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGAAGGAGAGAACGGATCCTTCAATTGTCCTCTGATTTTCACCC  250

seq1  AAGCACCATCGAGCCATCATCCCAACCACATCAAACAGAGCAGTAACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCATCGAGCCATCATCCCAACCACATCAAACAGAGCAGTAACAGC  300

seq1  AAAACAGCCCAGTCTGAGACTCTCTCCCAGTACTTCCTGCTCTAACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCCAGTCTGAGACTCTCTCCCAGTACTTCCTGCTCTAACACAA  350

seq1  AGGACACTTCTTGTCCCCATTTATCACATAGGCCAAAAACAGCATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTTCTTGTCCCCATTTATCACATAGGCCAAAAACAGCATAATTA  400

seq1  TCCAAAAAAAAAAAAAAAAACCCTCAAATTTCTCCAAAAGGCATAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAAAAAAAAAAAAACCCTCAAATTTCTCCAAAAGGCATAATTTT  450

seq1  CAAGGCAATGAAATCCATTTGAGCCCCTGCATTATCAGTCCTGTGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAATGAAATCCATTTGAGCCCCTGCATTATCAGTCCTGTGTTAAA  500

seq1  TACTT-GGGGATTTTAAAGAGAAGTTACAGGGGGCCA-TTGTTCTTCACT  548
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACTTGGGGGATTTTAAAGAGAAGTTACAGGGGGCCATTTGTTCTTCACT  550

seq1  GAAGCAC-TGTAC-TTGGGTGGGT-GGGTGG-AGTCTCA--GGGGACTAA  592
      ||||||| ||||| |||||||||| |||||| |||||||  ||| | |||
seq2  GAAGCACTTGTACTTTGGGTGGGTGGGGTGGAAGTCTCAAGGGGAATTAA  600

seq1  GTTAAA-AAC-TCAAAA  607
      |||||| ||| ||||||
seq2  GTTAAATAACTTCAAAA  617