BAC Information

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BAC

Clone NameB6Ng01-292E23
Chromosome3 (Build37)
Map Location 95,705,439 - 95,836,194
singlet/doubletdoublet
Overlap geneCar14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45
Upstream geneSelenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a
Downstream geneLOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292E23.bB6Ng01-292E23.g
ACCGA088983GA088984
length1,0161,120
definitionB6Ng01-292E23.b B6Ng01-292E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,705,439 - 95,706,459)(95,835,072 - 95,836,194)
sequence
gaattcttgcagaagtagaatcagagaggacaaacagcctaaacagatgg
aatatctttggggtaccctatcaagtagacttgaggttcagctatccttt
ctgtcattcacgttctcctctcacactggaccttgctttgactccagata
ggtcattaattagaagttcagagggattgagttccactgtccctagagtc
acagtatcctgccagccttttcctcctgacctcaggctctgtccagtttc
agaggcaggttgggggtaggactatttaggagaaagagagccagaaggat
ggcagccagctcgctcattgtgcctctccccgcccagttttcttcatttc
cacagggatttacagaggacgcattggcttttttgctgaatcaggagatg
tgggatttaatgattacagcagggtctagcagccacttgtgtaagcccca
gggtctgtgtgtgtagggagaaaaagaggagctagtgggtgaagctcagg
aaaagctctttccctcccccaggacaagtcttcatgccaggtgcggaggt
cctggggtgaaaggagtgccaatccatgtgcagttccaatctcaccttca
tatgtccagtggtgacctgtaagagagggatttgggctgtggccagtgca
gcctggagcaatgtcctggcctctgctctccctccggccgccagcgcctc
ctccttttctgctctctcttacccacctccactccagagcttcccaagtg
aagtattgaaactggatacctttgtgaaaaggtcgggggtcctatttaaa
ataactagccaggctgcagttgtgattaaagagtaaagagggaggagcaa
ggaaaagagataaagccaggagactaaaattaacctggatccaaatgtgc
aggcagcccagcccttactttttcccatctggagccaagtcagtgtaaca
cttagaagtgggtggggtaaggcagggtgtgagcagagggcttggaagca
tagatagaaggaggag
gaattcaagggtctatgcatgataaacaaagtctgccaactgagctgcac
ctcaagcccacaagcttctctttgaaggaaattcaagagaaagcacaacc
atccgttgctgggaagtcagtcacacagacagaggacaacaataagtgtg
gctcactttctccactcactagtgaagtcttggccacagttaagatggtc
tttccatgtgaggtaacataatcaaggcaattccttacaggcatgcctag
aagtccatggaccaggtaattctagagtctgccaggctgacagtgccttc
acggggctctcgtaggccagctttttacttggtaggaagcttttctgacg
gccccccgtgttcgtggggtggggggcactgtaccagcggcaccgcttct
ctggcccctggcctgttcttagctttccatgagtttcctggtgttcttct
accctatggcttaccaactctgctacaggcctttctttttgtttcacaaa
gaatgagattcagacaagataaaagattccagatttttaaattccttgaa
aagtttattgaagccatattgaaaataactagccttaatttagtactttt
ttaaaaaattagtacttttgtaagattggaacaattctgtctaattaaaa
taatttttacatattctaaagttctagactggggagatggttcactcagt
gaagtgattgctgctcaaactggagtttagatccccatcaaatacataaa
agtcaaatacagtggtgtgtaactgtaccccacagtgctgaagtgtgtgc
atagaaggggggaggggaccccctcaagctctctggccagccagtctaac
caaacctgagagctctgggttcagaatagagcctgtctcggagatgatgg
tgaagaggcactgaggagagcagccagtgctgacctctgacgtccatgtg
cgtgcacacacatccacacctttacttacacacagacacaaatgtcctgt
aggggtctgtttggattctattccaggttccagttgatctatccataagc
tttccaatgagtaatggtccctttctgatgtatcattacccgtcaattgc
aagcttccccaaataacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95705439_95706459
seq2: B6Ng01-292E23.b_47_1062

seq1  GAATTCTTGCAGAAGTAGAATCAGAGAGGACAAACAGCCTAAACAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCAGAAGTAGAATCAGAGAGGACAAACAGCCTAAACAGATGG  50

seq1  AATATCTTTGGGGTACCCTATCAAGTAGACTTGAGGTTCAGCTATCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTTGGGGTACCCTATCAAGTAGACTTGAGGTTCAGCTATCCTTT  100

seq1  CTGTCATTCACGTTCTCCTCTCACACTGGACCTTGCTTTGACTCCAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTCACGTTCTCCTCTCACACTGGACCTTGCTTTGACTCCAGATA  150

seq1  GGTCATTAATTAGAAGTTCAGAGGGATTGAGTTCCACTGTCCCTAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTAATTAGAAGTTCAGAGGGATTGAGTTCCACTGTCCCTAGAGTC  200

seq1  ACAGTATCCTGCCAGCCTTTTCCTCCTGACCTCAGGCTCTGTCCAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCCTGCCAGCCTTTTCCTCCTGACCTCAGGCTCTGTCCAGTTTC  250

seq1  AGAGGCAGGTTGGGGGTAGGACTATTTAGGAGAAAGAGAGCCAGAAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGTTGGGGGTAGGACTATTTAGGAGAAAGAGAGCCAGAAGGAT  300

seq1  GGCAGCCAGCTCGCTCATTGTGCCTCTCCCCGCCCAGTTTTCTTCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCAGCTCGCTCATTGTGCCTCTCCCCGCCCAGTTTTCTTCATTTC  350

seq1  CACAGGGATTTACAGAGGACGCATTGGCTTTTTTGCTGAATCAGGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGATTTACAGAGGACGCATTGGCTTTTTTGCTGAATCAGGAGATG  400

seq1  TGGGATTTAATGATTACAGCAGGGTCTAGCAGCCACTTGTGTAAGCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTAATGATTACAGCAGGGTCTAGCAGCCACTTGTGTAAGCCCCA  450

seq1  GGGTCTGTGTGTGTAGGGAGAAAAAGAGGAGCTAGTGGGTGAAGCTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTGTGTGTAGGGAGAAAAAGAGGAGCTAGTGGGTGAAGCTCAGG  500

seq1  AAAAGCTCTTTCCCTCCCCCAGGACAAGTCTTCATGCCAGGTGCGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCTTTCCCTCCCCCAGGACAAGTCTTCATGCCAGGTGCGGAGGT  550

seq1  CCTGGGGTGAAAGGAGTGCCAATCCATGTGCAGTTCCAATCTCACCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTGAAAGGAGTGCCAATCCATGTGCAGTTCCAATCTCACCTTCA  600

seq1  TATGTCCAGTGGTGACCTGTAAGAGAGGGATTTGGGCTGTGGCCAGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAGTGGTGACCTGTAAGAGAGGGATTTGGGCTGTGGCCAGTGCA  650

seq1  GCCTGGAGCAATGTCCTGGCCTCTGCTCTCCCTCCGGCCGCCAGCGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGCAATGTCCTGGCCTCTGCTCTCCCTCCGGCCGCCAGCGCCTC  700

seq1  CTCCTTTTCTGCTCTCTCTTACCCACCTCCACTCCAGAGCTTCCCAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTGCTCTCTCTTACCCACCTCCACTCCAGAGCTTCCCAAGTG  750

seq1  AAGTATTGAAACTGGATACCTTTGTGAAAAGGTCGGGGGTCCTATTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGAAACTGGATACCTTTGTGAAAAGGTCGGGGGTCCTATTTAAA  800

seq1  ATAACTAGCCAGGCTGCAGTTGTGATTAAAGAGTAAAGAGGGAGGAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGCCAGGCTGCAGTTGTGATTAAAGAGTAAAGAGGGAGGAGCAA  850

seq1  GGAAAAGAGATAAAGCCAGGAGACTAAAATTAACCTGGATCCAAATGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGATAAAGCCAGGAGACTAAAATTAACCTGGATCCAAATGTGC  900

seq1  AGGCAGCCCAGCCCTTACTTTTTCCCATCTGGAGCCAAGTCAGTGTAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCCAGCCCTTACTTTTTCCCATCTGGAGCCAAGTCAGTGTAACA  950

seq1  CTTAGAAGGTTGGGGTGGGGTAAGGCAAGGGTGTGAGCAGAGGGCTTGGA  1000
      ||||||||    |||||||||||||| |||||||||||||||||||||||
seq2  CTTAGAAG---TGGGTGGGGTAAGGC-AGGGTGTGAGCAGAGGGCTTGGA  996

seq1  AGCATAGAATAGAAGGAGGAG  1021
      ||||||| |||||||||||||
seq2  AGCATAG-ATAGAAGGAGGAG  1016

seq1: chr3_95835072_95836194
seq2: B6Ng01-292E23.g_65_1184 (reverse)

seq1  CATGTTATTTGGGGAAGCTAGCAATATGAC-AGTAATGATACATCAGAAA  49
      ||||||||||||||||||| ||||| ||||  ||||||||||||||||||
seq2  CATGTTATTTGGGGAAGCTTGCAAT-TGACGGGTAATGATACATCAGAAA  49

seq1  AGGAACATATACTCAATGGAAGCCTTATGGGATAGAATCAAACTGGAA-C  98
       ||| ||| |||||| |||||  ||||| |||||| ||| |||||||| |
seq2  GGGACCAT-TACTCATTGGAAAGCTTAT-GGATAG-ATC-AACTGGAACC  95

seq1  TGG-ATAGAAATCAAACAGACCCCAACAGGACATTTGTGTCTGTGTGTAA  147
      ||| ||||||  |||||||||||| |||||||||||||||||||||||||
seq2  TGGAATAGAATCCAAACAGACCCCTACAGGACATTTGTGTCTGTGTGTAA  145

seq1  GTAAAGGTGTGGATGTGTGTGCACGCACATGGACGTCAGAGGTCAGCACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTGTGGATGTGTGTGCACGCACATGGACGTCAGAGGTCAGCACT  195

seq1  GGCTGCTCTCCTCAGTGCCTCTTCACCATCATCTCCGAGACAGGCTCTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCTCCTCAGTGCCTCTTCACCATCATCTCCGAGACAGGCTCTAT  245

seq1  TCTTGAACCCAGAGCTCTCAGGTTTGGTTAGACTGGCTGGCCAGAGAGCT  297
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TGAACCCAGAGCTCTCAGGTTTGGTTAGACTGGCTGGCCAGAGAGCT  294

seq1  TGAGGGGGTCCCCT-CCCCCTTCTATGCACACACTTCAGCACTGTGGGGT  346
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGTCCCCTCCCCCCTTCTATGCACACACTTCAGCACTGTGGGGT  344

seq1  ACAGTTACACACCACTGTATTTGACTTTTATGTATTTGATGGGGATCTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTACACACCACTGTATTTGACTTTTATGTATTTGATGGGGATCTAA  394

seq1  ACTCCAGTTTGAGCAGCAATCACTTCACTGAGTGAACCATCTCCCCAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTTTGAGCAGCAATCACTTCACTGAGTGAACCATCTCCCCAGTC  444

seq1  TAGAACTTTAGAATATGTAAAAATTATTTTAATTAGACAGAATTGTTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTTAGAATATGTAAAAATTATTTTAATTAGACAGAATTGTTCCA  494

seq1  ATCTTACAAAAGTACTAATTTTTTAAAAAAGTACTAAATTAAGGCTAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAAAAGTACTAATTTTTTAAAAAAGTACTAAATTAAGGCTAGTT  544

seq1  ATTTTCAATATGGCTTCAATAAACTTTTCAAGGAATTTAAAAATCTGGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATATGGCTTCAATAAACTTTTCAAGGAATTTAAAAATCTGGAA  594

seq1  TCTTTTATCTTGTCTGAATCTCATTCTTTGTGAAACAAAAAGAAAGGCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCTTGTCTGAATCTCATTCTTTGTGAAACAAAAAGAAAGGCCT  644

seq1  GTAGCAGAGTTGGTAAGCCATAGGGTAGAAGAACACCAGGAAACTCATGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAGTTGGTAAGCCATAGGGTAGAAGAACACCAGGAAACTCATGG  694

seq1  AAAGCTAAGAACAGGCCAGGGGCCAGAGAAGCGGTGCCGCTGGTACAGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAGAACAGGCCAGGGGCCAGAGAAGCGGTGCCGCTGGTACAGTG  744

seq1  CCCCCCACCCCACGAACACGGGGGGGCCGTCAGAAAAGCTTCCTACCAAG  796
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCACGAACAC-GGGGGGCCGTCAGAAAAGCTTCCTACCAAG  793

seq1  TAAAAAGCTGGCCTACGAGAGCCCCGTGAAGGCACTGTCAGCCTGGCAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTGGCCTACGAGAGCCCCGTGAAGGCACTGTCAGCCTGGCAGA  843

seq1  CTCTAGAATTACCTGGTCCATGGACTTCTAGGCATGCCTGTAAGGAATTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAATTACCTGGTCCATGGACTTCTAGGCATGCCTGTAAGGAATTG  893

seq1  CCTTGATTATGTTACCTCACATGGAAAGACCATCTTAACTGTGGCCAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTATGTTACCTCACATGGAAAGACCATCTTAACTGTGGCCAAGA  943

seq1  CTTCACTAGTGAGTGGAGAAAGTGAGCCACACTTATTGTTGTCCTCTGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTAGTGAGTGGAGAAAGTGAGCCACACTTATTGTTGTCCTCTGTC  993

seq1  TGTGTGACTGACTTCCCAGCAACGGATGGTTGTGCTTTCTCTTGAATTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACTGACTTCCCAGCAACGGATGGTTGTGCTTTCTCTTGAATTTC  1043

seq1  CTTCAAAGAGAAGCTTGTGGGCTTGAGGTGCAGCTCAGTTGGCAGACTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGAGAAGCTTGTGGGCTTGAGGTGCAGCTCAGTTGGCAGACTTT  1093

seq1  GTTTATCATGCATAGACCCTTGAATTC  1123
      |||||||||||||||||||||||||||
seq2  GTTTATCATGCATAGACCCTTGAATTC  1120