BAC Information

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BAC

Clone NameB6Ng01-292H14
Chromosome3 (Build37)
Map Location 75,084,125 - 75,192,194
singlet/doubletdoublet
Overlap geneWdr49
Upstream geneLOC667434, LOC100041551, EG667459, BC050789, Serpini2
Downstream genePdcd10, Serpini1, Golph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292H14.bB6Ng01-292H14.g
ACCGA089103GA089104
length1,1771,106
definitionB6Ng01-292H14.b B6Ng01-292H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,084,125 - 75,085,309)(75,191,088 - 75,192,194)
sequence
gaattcagttcatatcacccatgttgtacagcctacagctgccaggaacg
tcagctccaaagcatccagtgctccttctgccttctgaaggcaccagtga
agaaggccatatccatacacataagagtaaatctcaaaataaaaacctat
tgttaccagtcaccatttgcatcccttctttctaacacagaaaaacaagg
cagtagcccactcatgacttcatttcgtagctgactttctggcaaccatt
tctataaggataaccacaaagcatttttaaagtgataaaaataaagtacg
ggctggttgtgaagtactgaaataggtcttcactaaaataacaggatgcc
ctgacttacaaatgatagagttggtttatctcctgacctctggccttgtt
tttcacaataattgacaacttcctcagactgacaaccatagcaacattct
caaagattgcctgaaacaggaaaggtgctctgtaaacagcaataacaaca
cactttggataatctgtggatttcagacttctgtaaaccttctcccacac
ccagatacccagccacattctttttttttccagccttgaaaaacgtttta
atgctaaagtacaagaattaagagaaaaaagagtaaaaaacacacagaca
cggggaaaacgaaataaatctgacgtttgtagtaggccagccgcagaaag
aatccactgtgtagaagtgtaggaggaagtgctggcatgaccggacagcc
agcctccttggtgtactgcacttctaagaagcacggtacaccacaccaca
ctcctgaagtcagaacactggattctcaggaagcgtgaatagctggtgtc
tgtcctgtgaagagtctgcactctctgtgtctcctctgtgtgcatcctct
gcagagagaccctggtggtatgagtgttcactatccagtccaaggtaatg
tgccaaccaatcacaggccataggcctctcctatttaaatgggttgcttg
aatgcagcaaagcagatgctgttccctgaaactgtctccacagtggttta
tctctgtgccttagcacccacgtcattgctgtcttgttgaggagccccag
tatgaagcatggagaacattcacaggtttgtgtgtccttcaatagtctat
gagccactttagtagttgtttcagtgc

gaattcctgtatcctgtccatgggcagcttctaccggtggctccttcccc
aacctcattgcataggctttgtgtacctcctttgaaaggtttttgctctg
ctatttctgttgcctgaaattcttgcctgccaattgtctgcacaactcat
gattcatgttagtagggtcttaactcaattttgaccctgtcctaagtact
ttctgctttcatctgatctacattgctctctgaatcacacaactacccag
catcatttgcatcctttttccttttttcctttatcaactttcttcattta
ctccccacccccattttttctcacacaaggtaatgagtgcattttattat
cttaaggaagtcttagatacttagccttgcacattataggtaatcaataa
attcaaggaattaatgcaaaagagcaaattacaaattaatgtgggaagag
gcaacatttgataaaaaacatttatagatggagaatgattgtcttaaatt
attctaatatagcttgtatgccagttctcagcatggcagccatctcctca
tctccataactactgagatataactcttagtgatccgatgcaaaacgaga
acaaaggaagtaacctgcttcttgttgtgggtcataagtagaactgacta
aaggaatacatttataagcagcaatttaaataaaatatctccatcccctg
gtagtcaacggcatctgctgctatcacttttgattcctgctgttgctcag
acccctacttgggatgcatataaaagatgattcactttgcctgctatttg
tggaattgcaagaagacaattaggtgatgtggatatagcttccaatttct
tgaaattgtctgattagctgtgacagcctcagatgagaggcacagaaaga
tctcatatattcctagacactttttattatctcagtacataaaatggatc
ttgttcttgtcagagcagtctactctgcacatgagcccattttgcaatgg
aatgtgggtttaaggtggggccactttcttgttctgcaggaggaggccat
gtcacatgactgctgcttactccgtctgattaaataacatggccttgaac
tgcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75084125_75085309
seq2: B6Ng01-292H14.b_49_1225

seq1  GAATTCAGTTCATATCACCCATGTTGTACAGCCTACAGCTGCCAGGAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCATATCACCCATGTTGTACAGCCTACAGCTGCCAGGAACG  50

seq1  TCAGCTCCAAAGCATCCAGTGCTCCTTCTGCCTTCTGAAGGCACCAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCAAAGCATCCAGTGCTCCTTCTGCCTTCTGAAGGCACCAGTGA  100

seq1  AGAAGGCCATATCCATACACATAAGAGTAAATCTCAAAATAAAAACCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCATATCCATACACATAAGAGTAAATCTCAAAATAAAAACCTAT  150

seq1  TGTTACCAGTCACCATTTGCATCCCTTCTTTCTAACACAGAAAAACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAGTCACCATTTGCATCCCTTCTTTCTAACACAGAAAAACAAGG  200

seq1  CAGTAGCCCACTCATGACTTCATTTCGTAGCTGACTTTCTGGCAACCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCCCACTCATGACTTCATTTCGTAGCTGACTTTCTGGCAACCATT  250

seq1  TCTATAAGGATAACCACAAAGCATTTTTAAAGTGATAAAAATAAAGTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGGATAACCACAAAGCATTTTTAAAGTGATAAAAATAAAGTACG  300

seq1  GGCTGGTTGTGAAGTACTGAAATAGGTCTTCACTAAAATAACAGGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTGTGAAGTACTGAAATAGGTCTTCACTAAAATAACAGGATGCC  350

seq1  CTGACTTACAAATGATAGAGTTGGTTTATCTCCTGACCTCTGGCCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTACAAATGATAGAGTTGGTTTATCTCCTGACCTCTGGCCTTGTT  400

seq1  TTTCACAATAATTGACAACTTCCTCAGACTGACAACCATAGCAACATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATAATTGACAACTTCCTCAGACTGACAACCATAGCAACATTCT  450

seq1  CAAAGATTGCCTGAAACAGGAAAGGTGCTCTGTAAACAGCAATAACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTGCCTGAAACAGGAAAGGTGCTCTGTAAACAGCAATAACAACA  500

seq1  CACTTTGGATAATCTGTGGATTTCAGACTTCTGTAAACCTTCTCCCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGATAATCTGTGGATTTCAGACTTCTGTAAACCTTCTCCCACAC  550

seq1  CCAGATACCCAGCCACATTCTTTTTTTTTCCAGCCTTGAAAAACGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATACCCAGCCACATTCTTTTTTTTTCCAGCCTTGAAAAACGTTTTA  600

seq1  ATGCTAAAGTACAAGAATTAAGAGAAAAAAGAGTAAAAAACACACAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAAGTACAAGAATTAAGAGAAAAAAGAGTAAAAAACACACAGACA  650

seq1  CGGGGAAAACGAAATAAATCTGACGTTTGTAGTAGGCCAGCCGCAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAAACGAAATAAATCTGACGTTTGTAGTAGGCCAGCCGCAGAAAG  700

seq1  AATCCACTGTGTAGAAGTGTAGGAGGAAGTGCTGGCATGACCGGACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTGTGTAGAAGTGTAGGAGGAAGTGCTGGCATGACCGGACAGCC  750

seq1  AGCCTCCTTGGTGTACTGCACTTCTAAGAAGCACGGTACACCACACCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTGGTGTACTGCACTTCTAAGAAGCACGGTACACCACACCACA  800

seq1  CTCCTGAAGTCAGAACACTGGATTCTCAGGAAGCGTGAATAGCTGGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGTCAGAACACTGGATTCTCAGGAAGCGTGAATAGCTGGTGTC  850

seq1  TGTCCTGTGAAGAGTCTGCACTCTCTGTGTCTCCTCTGTGTGCATCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGAAGAGTCTGCACTCTCTGTGTCTCCTCTGTGTGCATCCTCT  900

seq1  GCAGAGAGACCCTGGTGGTATGAGTGTTCACTATCCAGTCCAAGGTAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGACCCTGGTGGTATGAGTGTTCACTATCCAGTCCAAGGTAATG  950

seq1  TGCCAACCAATCACAGGCCATAGGCCTCTCCTATTTAAAT-GGTTGCTTG  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCCAACCAATCACAGGCCATAGGCCTCTCCTATTTAAATGGGTTGCTTG  1000

seq1  AATGCAGCAAAGCAGATGCTGTTCCCTGAAACTGTCTCCACAGTGGTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCAAAGCAGATGCTGTTCCCTGAAACTGTCTCCACAGTGGTTTA  1050

seq1  TCTCTGTGCCCTTTAGCAACCCACGGTCATTGCTGTCTTGTTGAGGGAAG  1099
      ||||||||||  ||||| |||||| |||||||||||||||||||||  ||
seq2  TCTCTGTGCC--TTAGC-ACCCAC-GTCATTGCTGTCTTGTTGAGG--AG  1094

seq1  CCCCAGTAATGAAAGCATGGAG-ACA-TCACA-GTTTGTGTGTCTTCCAT  1146
      ||||||| ||| |||||||||| ||| ||||| ||||||||||| | || 
seq2  CCCCAGT-ATG-AAGCATGGAGAACATTCACAGGTTTGTGTGTCCTTCAA  1142

seq1  TAGTCTATTGAAACCCACTTTAGTAGTTGTTTTCAGTGC  1185
      ||||||||    | ||||||||||||||| |||||||||
seq2  TAGTCTAT---GAGCCACTTTAGTAGTTG-TTTCAGTGC  1177


seq1: chr3_75191088_75192194
seq2: B6Ng01-292H14.g_64_1169 (reverse)

seq1  TATGCAGTTCAAGCCCAATTGTATTTTATCAGA-GGAGTAAGCAGCAGTC  49
      ||||||||||||| || ||  ||||| |||||| ||||||||||||||||
seq2  TATGCAGTTCAAGGCC-ATGTTATTTAATCAGACGGAGTAAGCAGCAGTC  49

seq1  AATGTTGACATGCCCTCCTCCTGCAGAACA--GAAGTGGCCCCACCTAAT  97
       ||| ||||||| |||||||||||||||||   |||||||||||||| | 
seq2  -ATG-TGACATGGCCTCCTCCTGCAGAACAAGAAAGTGGCCCCACCTTAA  97

seq1  ACCCACATTCCATTGCAAATGGGCCTCATGTGCAGAGTAGACCTGCTCTG  147
      |||||||||||||||||||  || ||||||||||||||||| ||||||||
seq2  ACCCACATTCCATTGCAAAATGGGCTCATGTGCAGAGTAGA-CTGCTCTG  146

seq1  ACAAGAACAAGATCCATTTTATGTACCTGAGATAAT-AAAAGTGTCTAGG  196
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  ACAAGAACAAGATCCATTTTATGTA-CTGAGATAATAAAAAGTGTCTAGG  195

seq1  AATATATGAGATCTTTCTGTGCCTCTCATCTGAGGCTGTCACAGCTAATC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGAGATCTTTCTGTGCCTCTCATCTGAGGCTGTCACAGCTAATC  245

seq1  AGACAATTTCAAGAAATTGGAAGCTATATCCACATCACCTAATTGTCTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTTCAAGAAATTGGAAGCTATATCCACATCACCTAATTGTCTTC  295

seq1  TTGCAATTCCACAAATAGCAGGCAAAGTGAATCATCTTTTATATGCATCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTCCACAAATAGCAGGCAAAGTGAATCATCTTTTATATGCATCC  345

seq1  CAAGTAGGGGTCTGAGCAACAGCAGGAATCAAAAGTGATAGCAGCAGATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGGGTCTGAGCAACAGCAGGAATCAAAAGTGATAGCAGCAGATG  395

seq1  CCGTTGACTACCAGGGGATGGAGATATTTTATTTAAATTGCTGCTTATAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGACTACCAGGGGATGGAGATATTTTATTTAAATTGCTGCTTATAA  445

seq1  ATGTATTCCTTTAGTCAGTTCTACTTATGACCCACAACAAGAAGCAGGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCCTTTAGTCAGTTCTACTTATGACCCACAACAAGAAGCAGGTT  495

seq1  ACTTCCTTTGTTCTCGTTTTGCATCGGATCACTAAGAGTTATATCTCAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTTGTTCTCGTTTTGCATCGGATCACTAAGAGTTATATCTCAGT  545

seq1  AGTTATGGAGATGAGGAGATGGCTGCCATGCTGAGAACTGGCATACAAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGAGATGAGGAGATGGCTGCCATGCTGAGAACTGGCATACAAGC  595

seq1  TATATTAGAATAATTTAAGACAATCATTCTCCATCTATAAATGTTTTTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGAATAATTTAAGACAATCATTCTCCATCTATAAATGTTTTTTA  645

seq1  TCAAATGTTGCCTCTTCCCACATTAATTTGTAATTTGCTCTTTTGCATTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTGCCTCTTCCCACATTAATTTGTAATTTGCTCTTTTGCATTA  695

seq1  ATTCCTTGAATTTATTGATTACCTATAATGTGCAAGGCTAAGTATCTAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGAATTTATTGATTACCTATAATGTGCAAGGCTAAGTATCTAAG  745

seq1  ACTTCCTTAAGATAATAAAATGCACTCATTACCTTGTGTGAGAAAAAATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTAAGATAATAAAATGCACTCATTACCTTGTGTGAGAAAAAATG  795

seq1  GGGGTGGGGAGTAAATGAAGAAAGTTGATAAAGGAAAAAAGGAAAAAGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGAGTAAATGAAGAAAGTTGATAAAGGAAAAAAGGAAAAAGGA  845

seq1  TGCAAATGATGCTGGGTAGTTGTGTGATTCAGAGAGCAATGTAGATCAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGATGCTGGGTAGTTGTGTGATTCAGAGAGCAATGTAGATCAGA  895

seq1  TGAAAGCAGAAAGTACTTAGGACAGGGTCAAAATTGAGTTAAGACCCTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGAAAGTACTTAGGACAGGGTCAAAATTGAGTTAAGACCCTAC  945

seq1  TAACATGAATCATGAGTTGTGCAGACAATTGGCAGGCAAGAATTTCAGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAATCATGAGTTGTGCAGACAATTGGCAGGCAAGAATTTCAGGC  995

seq1  AACAGAAATAGCAGAGCAAAAACCTTTCAAAGGAGGTACACAAAGCCTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATAGCAGAGCAAAAACCTTTCAAAGGAGGTACACAAAGCCTAT  1045

seq1  GCAATGAGGTTGGGGAAGGAGCCACCGGTAGAAGCTGCCCATGGACAGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAGGTTGGGGAAGGAGCCACCGGTAGAAGCTGCCCATGGACAGGA  1095

seq1  TACAGGAATTC  1107
      |||||||||||
seq2  TACAGGAATTC  1106


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