BAC Information

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BAC

Clone NameB6Ng01-292M20
Chromosome3 (Build37)
Map Location 38,804,580 - 38,895,732
singlet/doubletdoublet
Overlap geneFat4
Upstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292M20.bB6Ng01-292M20.g
ACCGA089346GA089347
length1,1471,019
definitionB6Ng01-292M20.b B6Ng01-292M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,894,581 - 38,895,732)(38,804,580 - 38,805,599)
sequence
gaattctttaaatatttgtcatggaaaccacctcataacactacattttc
taacaaaatatattccttcttttcctgtcagcaggagcgtagattgagac
atctctggtctggctgtgggatgatgaaagcctagagattaatgactttg
ccaatttcctacaattttgttgtaaaatgtataatgtaagagattcaaaa
tcaaatagtagctttttttttctgcatattttctgaagtaaagacatctt
cccactgtggccaatttagtaatagcagaaatattttcttcacatttagc
attactcaatacttgaccatggcccatctctggctgcagccatggacaga
aggacacagcagatgaccatggctgtgcctcacaatgaggtagacggctg
agaaagaatcgttcaatatgatatatccttcatttttcctgaaacttcac
tatagataacaagagccaaagaaaaatatcactctggggccacacaacaa
actcgcatattatcctgtaatgtggaactgtatacatgattcccagaagg
aatggctgaagggctgcagtgcagagaagagatgctgagggaggagagat
gtctcaccatgcctgctcgccgtgcaatcactgtgtggaactgtccatcc
gacaccttcttcatggtggtcagtttgtacgtcccactgcccagattgta
tgagaatctgagtctttcttcggcaatctccagagccaggaactctgccc
tctctcccgtctggttgtcatagttataaagcaataaagcatggcttttg
atggtggcaaacttgacataaatatagttgttgttggggtccaggctggg
aaactccatgtatgacagttcctcaaatccataactgttcagctcacagt
gcttgccaaagacgcctgcagggaagagaaaggacattgaagcccagcag
tgttttcttaagttattcgtaacaaaaatattttcagttataataatgaa
atcgtgcccgttaaatatgtcattatcatcatcttctcaagtgctatccg
aagtgcattcttgtaaccagatgaactccatgtcatcatgccagcctgtc
tgctaacagcatcgctaaggaagaaccaggaaaagtatgaaagagaa

gaattccagttttgtagagagacagctgatagaggcaggaaaatgctggc
ctcactgctggccatggccttaggttggcgtctacttgtctgtaagcagt
taccagagacatcacaatcagaggagttagttctagagtcttgtaaatag
tttgctatgactttccagtcctcagtcttaccccagtgttcattccctgg
aatactgttgagtgctctggggtccagtagccccacttcagacccaccct
gcagcacacaggaagtctattgtaaagacttgtgttagtagaactgaaag
acagctacacggagaggtgccaccagttgatatccctgactcagtattgt
cccaccaagctttagtgttcgtggtttataatcttggttgtcagtgggaa
ccgagtgggaccagggatcttgactggagattgcctccagcagactggcc
catgggcatgtctgtggggaggtatttccttgattgctaaagagcaaaga
agggtgagcccgctgtgggcagtgctacccactccctcctccagccagtg
attttggcttgtacaagaaaagcatctgagtaagctggacagagcaaacc
tgtgagcatcgttcctacgtggcctctgcttcagctgctgcctaagctcc
tgtactgactcctctcagggatgaactgttacctgcaagtgtaaaccaaa
taaattctctcctgaatgttttctcacggcaacaagaaagcaatctaggg
cagcagtgttagatttagatagggattttctcaaattttgtgatcccggg
gggaaattgctccctataatgtgatgcctgttagaaattgcctatctttg
ttcttcctgattttaaataatttaatatgaaacatcactatgtaatgaag
tggaccccagctccagtcaagaggctctttcctgcactcaggtctagggt
cagcatttctacgactgccttttcccttctggtgtaagaccagaccgact
ctatgctatatatctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38894581_38895732
seq2: B6Ng01-292M20.b_47_1193 (reverse)

seq1  TTCTCTCTCATACTTTT-CTGTGTCTTCTTTGGCGATGCTGTAGGCAGGA  49
      |||||| |||||||||| |||  ||||| || ||||||||||  ||| ||
seq2  TTCTCTTTCATACTTTTCCTGGTTCTTCCTTAGCGATGCTGTTAGCA-GA  49

seq1  CCAGCTTGCCAATGATGACCATGGAGTTTCATCTGGTTACAAGAATGGCA  99
      |  ||| ||  ||||||| ||||||| ||||||||||||||||||||   
seq2  CAGGCTGGC--ATGATGA-CATGGAG-TTCATCTGGTTACAAGAATG--C  93

seq1  ACTTCGGATAGCACTTGAGGAAGGATGATGATAATGACATATTTAAC-GG  148
      |||||||||||||||||||  | |||||||||||||||||||||||| ||
seq2  ACTTCGGATAGCACTTGAG--AAGATGATGATAATGACATATTTAACGGG  141

seq1  CACGA-TTCATTATTATAACTGAAAATA-TTTTGTTACGAATAACTTAAG  196
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  CACGATTTCATTATTATAACTGAAAATATTTTTGTTACGAATAACTTAAG  191

seq1  AAAACACTGCTGGGCTTCAATGTCCTTTCTCTTCCCTGCAGGCGTCTTTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGCTGGGCTTCAATGTCCTTTCTCTTCCCTGCAGGCGTCTTTG  241

seq1  GCAAGCACTGTGAGCTGAACAGTTATGGATTTGAGGAACTGTCATACATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACTGTGAGCTGAACAGTTATGGATTTGAGGAACTGTCATACATG  291

seq1  GAGTTTCCCAGCCTGGACCCCAACAACAACTATATTTATGTCAAGTTTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCCAGCCTGGACCCCAACAACAACTATATTTATGTCAAGTTTGC  341

seq1  CACCATCAAAAGCCATGCTTTATTGCTTTATAACTATGACAACCAGACGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCAAAAGCCATGCTTTATTGCTTTATAACTATGACAACCAGACGG  391

seq1  GAGAGAGGGCAGAGTTCCTGGCTCTGGAGATTGCCGAAGAAAGACTCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGCAGAGTTCCTGGCTCTGGAGATTGCCGAAGAAAGACTCAGA  441

seq1  TTCTCATACAATCTGGGCAGTGGGACGTACAAACTGACCACCATGAAGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATACAATCTGGGCAGTGGGACGTACAAACTGACCACCATGAAGAA  491

seq1  GGTGTCGGATGGACAGTTCCACACAGTGATTGCACGGCGAGCAGGCATGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCGGATGGACAGTTCCACACAGTGATTGCACGGCGAGCAGGCATGG  541

seq1  TGAGACATCTCTCCTCCCTCAGCATCTCTTCTCTGCACTGCAGCCCTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCTCTCCTCCCTCAGCATCTCTTCTCTGCACTGCAGCCCTTCA  591

seq1  GCCATTCCTTCTGGGAATCATGTATACAGTTCCACATTACAGGATAATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCTTCTGGGAATCATGTATACAGTTCCACATTACAGGATAATAT  641

seq1  GCGAGTTTGTTGTGTGGCCCCAGAGTGATATTTTTCTTTGGCTCTTGTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTTTGTTGTGTGGCCCCAGAGTGATATTTTTCTTTGGCTCTTGTTA  691

seq1  TCTATAGTGAAGTTTCAGGAAAAATGAAGGATATATCATATTGAACGATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTGAAGTTTCAGGAAAAATGAAGGATATATCATATTGAACGATT  741

seq1  CTTTCTCAGCCGTCTACCTCATTGTGAGGCACAGCCATGGTCATCTGCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGCCGTCTACCTCATTGTGAGGCACAGCCATGGTCATCTGCTG  791

seq1  TGTCCTTCTGTCCATGGCTGCAGCCAGAGATGGGCCATGGTCAAGTATTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCTGTCCATGGCTGCAGCCAGAGATGGGCCATGGTCAAGTATTG  841

seq1  AGTAATGCTAAATGTGAAGAAAATATTTCTGCTATTACTAAATTGGCCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCTAAATGTGAAGAAAATATTTCTGCTATTACTAAATTGGCCAC  891

seq1  AGTGGGAAGATGTCTTTACTTCAGAAAATATGCAGAAAAAAAAAGCTACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGATGTCTTTACTTCAGAAAATATGCAGAAAAAAAAAGCTACT  941

seq1  ATTTGATTTTGAATCTCTTACATTATACATTTTACAACAAAATTGTAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTTGAATCTCTTACATTATACATTTTACAACAAAATTGTAGGA  991

seq1  AATTGGCAAAGTCATTAATCTCTAGGCTTTCATCATCCCACAGCCAGACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCAAAGTCATTAATCTCTAGGCTTTCATCATCCCACAGCCAGACC  1041

seq1  AGAGATGTCTCAATCTACGCTCCTGCTGACAGGAAAAGAAGGAATATATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTCTCAATCTACGCTCCTGCTGACAGGAAAAGAAGGAATATATT  1091

seq1  TTGTTAGAAAATGTAGTGTTATGAGGTGGTTTCCATGACAAATATTTAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAAAATGTAGTGTTATGAGGTGGTTTCCATGACAAATATTTAAA  1141

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1147


seq1: chr3_38804580_38805599
seq2: B6Ng01-292M20.g_62_1080

seq1  GAATTCCAGTTTTGTAGAGAGACAGCTGATAGAGGCAGGAAAATGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTTGTAGAGAGACAGCTGATAGAGGCAGGAAAATGCTGGC  50

seq1  CTCACTGCTGGCCATGGCCTTAGGTTGGCGTCTACTTGTCTGTAAGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCTGGCCATGGCCTTAGGTTGGCGTCTACTTGTCTGTAAGCAGT  100

seq1  TACCAGAGACATCACAATCAGAGGAGTTAGTTCTAGAGTCTTGTAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGACATCACAATCAGAGGAGTTAGTTCTAGAGTCTTGTAAATAG  150

seq1  TTTGCTATGACTTTCCAGTCCTCAGTCTTACCCCAGTGTTCATTCCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATGACTTTCCAGTCCTCAGTCTTACCCCAGTGTTCATTCCCTGG  200

seq1  AATACTGTTGAGTGCTCTGGGGTCCAGTAGCCCCACTTCAGACCCACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTGAGTGCTCTGGGGTCCAGTAGCCCCACTTCAGACCCACCCT  250

seq1  GCAGCACACAGGAAGTCTATTGTAAAGACTTGTGTTAGTAGAACTGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACACAGGAAGTCTATTGTAAAGACTTGTGTTAGTAGAACTGAAAG  300

seq1  ACAGCTACACGGAGAGGTGCCACCAGTTGATATCCCTGACTCAGTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACACGGAGAGGTGCCACCAGTTGATATCCCTGACTCAGTATTGT  350

seq1  CCCACCAAGCTTTAGTGTTCGTGGTTTATAATCTTGGTTGTCAGTGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAAGCTTTAGTGTTCGTGGTTTATAATCTTGGTTGTCAGTGGGAA  400

seq1  CCGAGTGGGACCAGGGATCTTGACTGGAGATTGCCTCCAGCAGACTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGGGACCAGGGATCTTGACTGGAGATTGCCTCCAGCAGACTGGCC  450

seq1  CATGGGCATGTCTGTGGGGAGGTATTTCCTTGATTGCTAAAGAGCAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCATGTCTGTGGGGAGGTATTTCCTTGATTGCTAAAGAGCAAAGA  500

seq1  AGGGTGAGCCCGCTGTGGGCAGTGCTACCCACTCCCTCCTCCAGCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGCCCGCTGTGGGCAGTGCTACCCACTCCCTCCTCCAGCCAGTG  550

seq1  ATTTTGGCTTGTACAAGAAAAGCATCTGAGTAAGCTGGACAGAGCAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCTTGTACAAGAAAAGCATCTGAGTAAGCTGGACAGAGCAAACC  600

seq1  TGTGAGCATCGTTCCTACGTGGCCTCTGCTTCAGCTGCTGCCTAAGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCATCGTTCCTACGTGGCCTCTGCTTCAGCTGCTGCCTAAGCTCC  650

seq1  TGTACTGACTCCTCTCAGGGATGAACTGTTACCTGCAAGTGTAAACCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGACTCCTCTCAGGGATGAACTGTTACCTGCAAGTGTAAACCAAA  700

seq1  TAAATTCTCTCCTGAATGTTTTCTCACGGCAACAAGAAAGCAATCTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTCTCCTGAATGTTTTCTCACGGCAACAAGAAAGCAATCTAGGG  750

seq1  CAGCAGTGTTAGATTTAGATAGGGATTTTCTCAAATTTTGTGATCCCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGTTAGATTTAGATAGGGATTTTCTCAAATTTTGTGATCCCGGG  800

seq1  GGGAAATTGCTCCCTATAATGTGATGCCTGTTAGAAATTGCCTATCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTGCTCCCTATAATGTGATGCCTGTTAGAAATTGCCTATCTTTG  850

seq1  TTCTTCCTGATTTTAAATAATTTAATATGAAACATCACTATGTAATGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGATTTTAAATAATTTAATATGAAACATCACTATGTAATGAAG  900

seq1  TGGACCCCAGCTCCAGTCAAGAGGCTCTTTCCTGCACTCAGGTCTAGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCAGCTCCAGTCAAGAGGCTCTTTCCTGCACTCAGGTCTAGGGT  950

seq1  CAGCATTTCTAACGACTGCCTTT--CCTTCTGGTGTAAGACCAGACCGAC  998
      |||||||||| ||||||||||||  |||||||||||||||||||||||||
seq2  CAGCATTTCT-ACGACTGCCTTTTCCCTTCTGGTGTAAGACCAGACCGAC  999

seq1  TCTATGCTAATATAATCTCTGC  1020
      |||||||| |||| ||||||||
seq2  TCTATGCT-ATAT-ATCTCTGC  1019


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