BAC Information

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BAC

Clone NameB6Ng01-293B21
Chromosome3 (Build37)
Map Location 64,054,898 - 64,080,716
singlet/doubletdoublet
Overlap gene4930518C23Rik, EG637004
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739
Downstream geneEG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293B21.bB6Ng01-293B21.g
ACCGA089576GA089577
length1,0491,168
definitionB6Ng01-293B21.b B6Ng01-293B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,054,898 - 64,055,943)(64,079,549 - 64,080,716)
sequence
ttttttacttctccatgtctctaccttgtttcccagtattttgggtactg
tggtaggattacttttgctcatatcctttggaccctgggcatttagaaag
ttaacagagtttgtcaaatcacaagtagatgcagcctttaagaagccagt
gttggtatactatcatcgccgtgaggtctgagacattgaccaagatactt
acactgatccccctgacgccccttcggtgggcctagattttaccatcttg
gacccaggtcctaaccaggtatgctttggtaagctatggagacatcaatg
acgggaatagcatgatgccacataccagaggcacacccatgataggctgt
agagcacctcaatgacaggattattttgagttcataatccaggggcccac
tctgagataagagtgctggatgtgggggcaactcacatagcctaagacag
agactctatcctcaaaaatcaaccactttgggtgctggttgtgaatgcac
atcatgtagcctaagacagatgctccatctataatataaaagagggggag
atgtgggagactgacattgagacataagccaaagttcccttcccttgaga
aacttctgaccttttgaaagatgttggagactgacactgagtcataagcc
aaagatcccttcccttgagaaatgtctgatcttttgaaagatgttggaga
ctgacactgagtcataagctaaagttcccctcccttcttgagaaactccc
gaccttttgaaatgacagctgacagaacatcaagatcagataatagtaac
tgcaaattttccgggaaaacccacaggattttcccttagctaagaatatg
tagtgtgctcccggacagttatgcagaaccacccctgcctccaggttgag
gcatgggcaagtttctccctctttacttcctctttcttactgcttttatt
ctgtaacccttgctcgcaataaaacaaaccttgataggatcgtctacttt
ggtctctcttctttcccaccacattttctcttttcaggcaggtcaccct
gaattcactaaacatcagaagtaaccattccttcctgaaaagatttgatc
ctaaaaaaattattagatgaatcatctgtttgagggttagaaaggaaaat
acaaatattagaaagtaggacaagagataaaaatgagataggaaaacaga
acacaggaataatacagtgtaaatgaagaaacaattgggttgtgggtgtt
atagatcatcacactggaagtgatgccttaagatcatgagactggattga
agagaagataaaatatttaggatacatgttagtaattacaggatatgtta
caggaaagatacatgaaggagtgtcaggaatatgtgctcacttaatttcc
atgcttaggtcttcataaatgcaaagagcaaaggaggactactgaggtag
tgaggaagacatgcttttcatttttctgacattgtacgttaaaaagagat
ttctgataactttgtaggacaagagtgtttactcttctgatttgactagt
catatatttcatgtcactcaatataagttttgtgatatacatgtgcagga
gtcctgacagcatgaaacaaaaaaatcaagagaaagtacagaatagaagt
tagagatcagagtaagacaaggagagcacacagaaaacaaagtcgtgtaa
ctatgcagattgagacttggactcagtcagtcatctctacacatgagaca
ctaaatgtgatgaagaatctggatatcctgactcaggggagtcaacaatg
tccagcaagatggaagaaagtgaaagagacattcctgacactgctgtggc
cccacccatgaaaaacagtgatactaagtgtcttcatcttaacaattggc
agccatgaaacatttttgctgatatagcaaccaaagtattctcagaattg
tccccacccccacccaaggaggtggaagactgaatagaatgtcattgtct
acagaagtatgtgagaacaagggatccctattcacctacctctcaaatac
tcagaagctgtcattttcattaagtatttaccaccctctttcagtaacta
taaaatatttttccaattcaggtgggaatatgcttctccttctctatctt
actgaatattttaatgtatcgcacaataccagtgataggtttcagactga
ggccaatgtggtgaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64054898_64055943
seq2: B6Ng01-293B21.b_53_1101

seq1  TTTTTTACTTCTCCATGTCTCTACCTTGTTTCCCAGTATTTTGGGTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTTCTCCATGTCTCTACCTTGTTTCCCAGTATTTTGGGTACTG  50

seq1  TGGTAGGATTACTTTTGCTCATATCCTTTGGACCCTGGGCATTTAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGATTACTTTTGCTCATATCCTTTGGACCCTGGGCATTTAGAAAG  100

seq1  TTAACAGAGTTTGTCAAATCACAAGTAGATGCAGCCTTTAAGAAGCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAGTTTGTCAAATCACAAGTAGATGCAGCCTTTAAGAAGCCAGT  150

seq1  GTTGGTATACTATCATCGCCGTGAGGTCTGAGACATTGACCAAGATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTATACTATCATCGCCGTGAGGTCTGAGACATTGACCAAGATACTT  200

seq1  ACACTGATCCCCCTGACGCCCCTTCGGTGGGCCTAGATTTTACCATCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATCCCCCTGACGCCCCTTCGGTGGGCCTAGATTTTACCATCTTG  250

seq1  GACCCAGGTCCTAACCAGGTATGCTTTGGTAAGCTATGGAGACATCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGTCCTAACCAGGTATGCTTTGGTAAGCTATGGAGACATCAATG  300

seq1  ACGGGAATAGCATGATGCCACATACCAGAGGCACACCCATGATAGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAATAGCATGATGCCACATACCAGAGGCACACCCATGATAGGCTGT  350

seq1  AGAGCACCTCAATGACAGGATTATTTTGAGTTCATAATCCAGGGGCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCTCAATGACAGGATTATTTTGAGTTCATAATCCAGGGGCCCAC  400

seq1  TCTGAGATAAGAGTGCTGGATGTGGGGGCAACTCACATAGCCTAAGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATAAGAGTGCTGGATGTGGGGGCAACTCACATAGCCTAAGACAG  450

seq1  AGACTCTATCCTCAAAAATCAACCACTTTGGGTGCTGGTTGTGAATGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTATCCTCAAAAATCAACCACTTTGGGTGCTGGTTGTGAATGCAC  500

seq1  ATCATGTAGCCTAAGACAGATGCTCCATCTATAATATAAAAGAGGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTAGCCTAAGACAGATGCTCCATCTATAATATAAAAGAGGGGGAG  550

seq1  ATGTGGGAGACTGACATTGAGACATAAGCCAAAGTTCCCTTCCCTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGACTGACATTGAGACATAAGCCAAAGTTCCCTTCCCTTGAGA  600

seq1  AACTTCTGACCTTTTGAAAGATGTTGGAGACTGACACTGAGTCATAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGACCTTTTGAAAGATGTTGGAGACTGACACTGAGTCATAAGCC  650

seq1  AAAGATCCCTTCCCTTGAGAAATGTCTGATCTTTTGAAAGATGTTGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCCTTCCCTTGAGAAATGTCTGATCTTTTGAAAGATGTTGGAGA  700

seq1  CTGACACTGAGTCATAAGCTAAAGTTCCCCTCCCTTCTTGAGAAACTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTGAGTCATAAGCTAAAGTTCCCCTCCCTTCTTGAGAAACTCCC  750

seq1  GACCTTTTGAAATGACAGCTGACAGAACATCAAGATCAGATAATAGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTTGAAATGACAGCTGACAGAACATCAAGATCAGATAATAGTAAC  800

seq1  TGCAAATTTTCCGGGAAAACCCACAGGATTTTCCCTTAGCTAAGAATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTTTCCGGGAAAACCCACAGGATTTTCCCTTAGCTAAGAATATG  850

seq1  TAGTGTGCTCCCGGACAGTTATGCAGAACCACCCCTGCCTCCAGGTTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGCTCCCGGACAGTTATGCAGAACCACCCCTGCCTCCAGGTTGAG  900

seq1  GCATGGGCAAGTTTCTCCCTCTTTACTTCCTCTTTCTTACTGCTTTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCAAGTTTCTCCCTCTTTACTTCCTCTTTCTTACTGCTTTTATT  950

seq1  CTGTAA-CCTTGCTCGCAAT-AAACAAACCTTGATAGGATCGTCTAC-TT  997
      |||||| ||||||||||||| |||||||||||||||||||||||||| ||
seq2  CTGTAACCCTTGCTCGCAATAAAACAAACCTTGATAGGATCGTCTACTTT  1000

seq1  GGTCTCCTCCTTCTTTCCCA-CACA-TTTCTC-TTTCAGGCAAGGTCACC  1044
      ||||||   ||||||||||| |||| |||||| |||||||| ||||||||
seq2  GGTCTC--TCTTCTTTCCCACCACATTTTCTCTTTTCAGGC-AGGTCACC  1047

seq1  CT  1046
      ||
seq2  CT  1049

seq1: chr3_64079549_64080716
seq2: B6Ng01-293B21.g_65_1232 (reverse)

seq1  AGATT---CACAATTGCCTCAGTCTGAAACTTATCACTGGGTATTGTGCG  47
      |||||   |||| | ||||||||||||||| ||||||| |||||||||||
seq2  AGATTCACCACATTGGCCTCAGTCTGAAACCTATCACT-GGTATTGTGCG  49

seq1  ATAAACATTTAAATATTCAGTAAGAATAGAGGAGGAGGAAGCATA-TCCC  96
      ||  ||||| |||||||||||||| |||||| |||| |||||||| ||||
seq2  AT--ACATTAAAATATTCAGTAAG-ATAGAGAAGGA-GAAGCATATTCCC  95

seq1  ACCTGAAATTG-AAAATA-TTTATAGTTACTGGAAAGAGGGTGGTAAATA  144
      ||||||| | | |||||| |||||||||||| ||||||||||||||||||
seq2  ACCTGAATTGGAAAAATATTTTATAGTTACT-GAAAGAGGGTGGTAAATA  144

seq1  CTAAATGAAAATGACAGCTTCTGAGTATTTGAGAGGTAGGTGAATAGGGA  194
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGAAAATGACAGCTTCTGAGTATTTGAGAGGTAGGTGAATAGGGA  194

seq1  TCCCTTTGTTCTCACATACTTCTGTAGACAATGACATTCTATTCAGTCTT  244
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCC-TTGTTCTCACATACTTCTGTAGACAATGACATTCTATTCAGTCTT  243

seq1  CCACCTCCTT-GGTGGGGGTGGGGACAATTCTGAGAATACTTTGGTTGCT  293
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCTTGGGTGGGGGTGGGGACAATTCTGAGAATACTTTGGTTGCT  293

seq1  ATATCAGCAAAAATGTTTCATGGCTGCCAATTGTTAAGATGAAGACACTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGCAAAAATGTTTCATGGCTGCCAATTGTTAAGATGAAGACACTT  343

seq1  AGTATCACTGTTTTTCATGGGTGGGGCCACAGCAGTGTCAGGAATGTCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACTGTTTTTCATGGGTGGGGCCACAGCAGTGTCAGGAATGTCTC  393

seq1  TTTCACTTTCTTCCATCTTGCTGGACATTGTTGACTCCCCTGAGTCAGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTTCTTCCATCTTGCTGGACATTGTTGACTCCCCTGAGTCAGGA  443

seq1  TATCCAGATTCTTCATCACATTTAGTGTCTCATGTGTAGAGATGACTGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGATTCTTCATCACATTTAGTGTCTCATGTGTAGAGATGACTGAC  493

seq1  TGAGTCCAAGTCTCAATCTGCATAGTTACACGACTTTGTTTTCTGTGTGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCAAGTCTCAATCTGCATAGTTACACGACTTTGTTTTCTGTGTGC  543

seq1  TCTCCTTGTCTTACTCTGATCTCTAACTTCTATTCTGTACTTTCTCTTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGTCTTACTCTGATCTCTAACTTCTATTCTGTACTTTCTCTTGA  593

seq1  TTTTTTTGTTTCATGCTGTCAGGACTCCTGCACATGTATATCACAAAACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTCATGCTGTCAGGACTCCTGCACATGTATATCACAAAACT  643

seq1  TATATTGAGTGACATGAAATATATGACTAGTCAAATCAGAAGAGTAAACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGAGTGACATGAAATATATGACTAGTCAAATCAGAAGAGTAAACA  693

seq1  CTCTTGTCCTACAAAGTTATCAGAAATCTCTTTTTAACGTACAATGTCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCCTACAAAGTTATCAGAAATCTCTTTTTAACGTACAATGTCAG  743

seq1  AAAAATGAAAAGCATGTCTTCCTCACTACCTCAGTAGTCCTCCTTTGCTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAAGCATGTCTTCCTCACTACCTCAGTAGTCCTCCTTTGCTC  793

seq1  TTTGCATTTATGAAGACCTAAGCATGGAAATTAAGTGAGCACATATTCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTATGAAGACCTAAGCATGGAAATTAAGTGAGCACATATTCCT  843

seq1  GACACTCCTTCATGTATCTTTCCTGTAACATATCCTGTAATTACTAACAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCTTCATGTATCTTTCCTGTAACATATCCTGTAATTACTAACAT  893

seq1  GTATCCTAAATATTTTATCTTCTCTTCAATCCAGTCTCATGATCTTAAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTAAATATTTTATCTTCTCTTCAATCCAGTCTCATGATCTTAAGG  943

seq1  CATCACTTCCAGTGTGATGATCTATAACACCCACAACCCAATTGTTTCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTCCAGTGTGATGATCTATAACACCCACAACCCAATTGTTTCTT  993

seq1  CATTTACACTGTATTATTCCTGTGTTCTGTTTTCCTATCTCATTTTTATC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACACTGTATTATTCCTGTGTTCTGTTTTCCTATCTCATTTTTATC  1043

seq1  TCTTGTCCTACTTTCTAATATTTGTATTTTCCTTTCTAACCCTCAAACAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCTACTTTCTAATATTTGTATTTTCCTTTCTAACCCTCAAACAG  1093

seq1  ATGATTCATCTAATAATTTTTTTAGGATCAAATCTTTTCAGGAAGGAATG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCATCTAATAATTTTTTTAGGATCAAATCTTTTCAGGAAGGAATG  1143

seq1  GTTACTTCTGATGTTTAGTGAATTC  1168
      |||||||||||||||||||||||||
seq2  GTTACTTCTGATGTTTAGTGAATTC  1168