BAC Information

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BAC

Clone NameB6Ng01-293D08
Chromosome3 (Build37)
Map Location 150,761,207 - 150,862,557
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293D08.bB6Ng01-293D08.g
ACCGA089646GA089647
length1,1551,112
definitionB6Ng01-293D08.b B6Ng01-293D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,761,207 - 150,762,369)(150,861,448 - 150,862,557)
sequence
gaattctttcttgtcgctctatactcagatttctgccctcacctaacttt
tctcctaacttttttctgttctttgatcctttctttgtttctttgttcaa
tatctaaatcttggtattctgagactcactgtggtgtcattaaatcctgt
catttgtaatactatcaacatactttaaaacacccagtctattgtgctgt
gatcttcagccatatccccatgaaatccctagaatttgacctgaccagaa
ctcattcttgagtcagacatagttatacaagaaatcatgttgcctttgca
ataatgttactgggatatctctagtagaactcagctaacatgtaagccac
aaccacaaggaaagatcataaatggatgcttaatacatgacactgtatga
tctcctaagaaacagctagaattgtttctgtagcatgttctattgtagag
ctttcacttactcactcaagccttcagacaacctcactcacaacctccag
tagtctggaatgctatgagaggacatcagagagaaccactcagacaagcc
cagaaaatatccacagctctgaagattaataataaattatactcgtaaac
cattaaatttgtggtagatatgacatgacttctaacttgagatcctaaac
ttcagggctgtgaatgttgctgctaacctgatccagtcttttctgtacgt
gacaggcatataaagctcagcctggctagctaaattaatcctatcttttt
caacaagtgtagctgtctcctaccatcccagggcttgaccacgaatgctg
tggctaatcagttctctcagtcaaaatgcatgtttatttctaaatagaat
ctgcctgtattcctgaagttggaccaaaatttttatttctcctgcttact
cttcccaatttctggtattaaaaaatgtattcagccatgcctaaattcca
taattcccttgtagctgatacattgaataataaaagaaaaatgtattctc
caatttacacacatttactaagcactcactatgattgtgacatttttctg
cctgtagttctgcattcagtgttgtgaccatctcccacacatcagatgcc
ttatttaatctactgaaccgaatctgaatcaggagccattacactacata
taata

gaattctatttgccaaagtgagatatcgaagcctaacaagctgaaaggaa
cacagattctggcagagaaaattacagtggaagaaaacagtgaacagctt
atcattttcccaaggaggcaatcgacaggatggtatgtgcagaaattggg
caaaatgacgggggctgcaaaagacccagtggtctgaatatttgttaccc
acacccatgttagaggctgtgatggttaatgctcatggtaaacttgattg
ggttcatattcacataagggatgtacctgagcctgtgtttgagcgttcaa
acagttctaactgttccaaagaaccctttgtaccatggactgagggccta
gactgcatgaaaagggaaatggagaaagccagatgaacactaagattgaa
cttcgttcctgatcgttcaggtgttagacagcaattttgctctcctgctg
gtacacccacaagctgtttctgcgtttgagccttccctatcatagtgagc
tatttctctggactgaggagccaatatcctttctcttttaagttgtttct
atctgatgttttcttatagccacaaagaggccacaagccctttgaacttt
taattttatttctattttgtgtgtatgggtatgttgcctctatgtatgct
tttgtgccacctgtgtacagtacccgaaattgccagaagagaggaacaga
gtcgctgaaactggtgctgggaattgaagccaagtcctccggaagattag
tgattcctcttatgtgctgagtcatctctccagccctgaaaaagtatatt
tttaaaagatctgcccatccatttctttagagggtctcctcacctcccac
ccccaaagatacatatttccattcattgtgccgggtctcagggcttgccc
cttttcctacccctgcccatacctaatcatgttcccccttttaaaggaaa
ttattaaagtcattctgcagcctgagcccgtcatgaataagtcttctttg
ctattttcacctaagaaggccctggtattattctcacaaaagaccatgca
gaaacaaatgcttaactgctaacttttgcctgatgtcacagaaaaatagg
cgactgttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150761207_150762369
seq2: B6Ng01-293D08.b_47_1201

seq1  GAATTCTTTCTTGTCGCTCTATACTCAGATTTCTGCCCTCACCTAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGTCGCTCTATACTCAGATTTCTGCCCTCACCTAACTTT  50

seq1  TCTCCTAACTTTTTTCTGTTCTTTGATCCTTTCTTTGTTTCTTTGTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAACTTTTTTCTGTTCTTTGATCCTTTCTTTGTTTCTTTGTTCAA  100

seq1  TATCTAAATCTTGGTATTCTGAGACTCACTGTGGTGTCATTAAATCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAATCTTGGTATTCTGAGACTCACTGTGGTGTCATTAAATCCTGT  150

seq1  CATTTGTAATACTATCAACATACTTTAAAACACCCAGTCTATTGTGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAATACTATCAACATACTTTAAAACACCCAGTCTATTGTGCTGT  200

seq1  GATCTTCAGCCATATCCCCATGAAATCCCTAGAATTTGACCTGACCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCAGCCATATCCCCATGAAATCCCTAGAATTTGACCTGACCAGAA  250

seq1  CTCATTCTTGAGTCAGACATAGTTATACAAGAAATCATGTTGCCTTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTTGAGTCAGACATAGTTATACAAGAAATCATGTTGCCTTTGCA  300

seq1  ATAATGTTACTGGGATATCTCTAGTAGAACTCAGCTAACATGTAAGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTACTGGGATATCTCTAGTAGAACTCAGCTAACATGTAAGCCAC  350

seq1  AACCACAAGGAAAGATCATAAATGGATGCTTAATACATGACACTGTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAGGAAAGATCATAAATGGATGCTTAATACATGACACTGTATGA  400

seq1  TCTCCTAAGAAACAGCTAGAATTGTTTCTGTAGCATGTTCTATTGTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGAAACAGCTAGAATTGTTTCTGTAGCATGTTCTATTGTAGAG  450

seq1  CTTTCACTTACTCACTCAAGCCTTCAGACAACCTCACTCACAACCTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTTACTCACTCAAGCCTTCAGACAACCTCACTCACAACCTCCAG  500

seq1  TAGTCTGGAATGCTATGAGAGGACATCAGAGAGAACCACTCAGACAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGAATGCTATGAGAGGACATCAGAGAGAACCACTCAGACAAGCC  550

seq1  CAGAAAATATCCACAGCTCTGAAGATTAATAATAAATTATACTCGTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATATCCACAGCTCTGAAGATTAATAATAAATTATACTCGTAAAC  600

seq1  CATTAAATTTGTGGTAGATATGACATGACTTCTAACTTGAGATCCTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTTGTGGTAGATATGACATGACTTCTAACTTGAGATCCTAAAC  650

seq1  TTCAGGGCTGTGAATGTTGCTGCTAACCTGATCCAGTCTTTTCTGTACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCTGTGAATGTTGCTGCTAACCTGATCCAGTCTTTTCTGTACGT  700

seq1  GACAGGCATATAAAGCTCAGCCTGGCTAGCTAAATTAATCCTATCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCATATAAAGCTCAGCCTGGCTAGCTAAATTAATCCTATCTTTTT  750

seq1  CAACAAGTGTAGCTGTCTCCTACCATCCCAGGGCTTGACCACGAATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTGTAGCTGTCTCCTACCATCCCAGGGCTTGACCACGAATGCTG  800

seq1  TGGCTAATCAGTTCTCTCAGTCAAAATGCATGTTTATTTCTAAATAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATCAGTTCTCTCAGTCAAAATGCATGTTTATTTCTAAATAGAAT  850

seq1  CTGCCTGTATTCCTGAAGTTGGACCAAAATTTTTATTTCTCCTGCTTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTATTCCTGAAGTTGGACCAAAATTTTTATTTCTCCTGCTTACT  900

seq1  CTTCCCAATTTCTGGTATTAAAAAATGTATTCAGCCATGCCTAAATTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAATTTCTGGTATTAAAAAATGTATTCAGCCATGCCTAAATTCCA  950

seq1  TAATT-CCTTGTAGCTGAATACATTGAATAAATAAAAGAAAAATGTATTC  999
      ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TAATTCCCTTGTAGCTG-ATACATTGAAT-AATAAAAGAAAAATGTATTC  998

seq1  TCCAATTTTACACACATTTACTAAGCACTCACTATGATTGTGACA-TTTT  1048
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCAA-TTTACACACATTTACTAAGCACTCACTATGATTGTGACATTTTT  1047

seq1  CTGCCTGTAGTTCTGCATTCAGTTGTGTGACCAACCTCCCACACATCAGG  1098
      |||||||||||||||||||||||  ||||||| | ||||||||||||| |
seq2  CTGCCTGTAGTTCTGCATTCAGTGTTGTGACC-ATCTCCCACACATCA-G  1095

seq1  ATGCTTAATTTAATTCTAACTTGACCCAAATCTG-ATCAGGAGCCATTAC  1147
      |||| | |||||| ||||   ||| || |||||| |||||||||||||||
seq2  ATGCCTTATTTAA-TCTA--CTGAACCGAATCTGAATCAGGAGCCATTAC  1142

seq1  AACTTTACATATAATA  1163
      |    |||||||||||
seq2  A---CTACATATAATA  1155


seq1: chr3_150861448_150862557
seq2: B6Ng01-293D08.g_63_1174 (reverse)

seq1  CCAG-ACAGTCGCCTA-TTTTCTGTGGAACATCAGGCAAAAGTTTAGCAG  48
      |||| ||||||||||| |||||||||  |||||||||||||| |||||||
seq2  CCAGAACAGTCGCCTATTTTTCTGTG--ACATCAGGCAAAAG-TTAGCAG  47

seq1  TTTAGCATTTGTTTCTGCATGGTCTTTTGTGAGGAATTAATACCAGG--C  96
      || ||||||||||||||||||||||||||||||  | ||||||||||  |
seq2  TTAAGCATTTGTTTCTGCATGGTCTTTTGTGAG--AATAATACCAGGGCC  95

seq1  TTCTTAGGTGAAAATAGCAAAGAAGACTTA-TCATGAC-GGCTCAGGCTG  144
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TTCTTAGGTGAAAATAGCAAAGAAGACTTATTCATGACGGGCTCAGGCTG  145

seq1  CAGAATGAC-TTAATAATTTCCTTTAAAAGGGGGAACATGATTAGGTATG  193
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGACTTTAATAATTTCCTTTAAAAGGGGGAACATGATTAGGTATG  195

seq1  GGCAGGGGTAGGAAAAGGGGCAAGCCCTGAGACCCGGCACAATGAATGGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGTAGGAAAAGGGGCAAGCCCTGAGACCCGGCACAATGAATGGA  245

seq1  AATATGTATCTTTGGGGGTGGGAGGTGAGGAGACCCTCTAAAGAAATGGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTATCTTTGGGGGTGGGAGGTGAGGAGACCCTCTAAAGAAATGGA  295

seq1  TGGGCAGATCTTTTAAAAATATACTTTTTCAGGGCTGGAGAGATGACTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGATCTTTTAAAAATATACTTTTTCAGGGCTGGAGAGATGACTCA  345

seq1  GCACATAAGAGGAATCACTAATCTTCCGGAGGACTTGGCTTCAATTCCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAAGAGGAATCACTAATCTTCCGGAGGACTTGGCTTCAATTCCCA  395

seq1  GCACCAGTTTCAGCGACTCTGTTCCTCTCTTCTGGCAATTTCGGGTACTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGTTTCAGCGACTCTGTTCCTCTCTTCTGGCAATTTCGGGTACTG  445

seq1  TACACAGGTGGCACAAAAGCATACATAGAGGCAACATACCCATACACACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGTGGCACAAAAGCATACATAGAGGCAACATACCCATACACACA  495

seq1  AAATAGAAATAAAATTAAAAGTTCAAAGGGCTTGTGGCCTCTTTGTGGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAATAAAATTAAAAGTTCAAAGGGCTTGTGGCCTCTTTGTGGCT  545

seq1  ATAAGAAAACATCAGATAGAAACAACTTAAAAGAGAAAGGATATTGGCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAACATCAGATAGAAACAACTTAAAAGAGAAAGGATATTGGCTC  595

seq1  CTCAGTCCAGAGAAATAGCTCACTATGATAGGGAAGGCTCAAACGCAGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCAGAGAAATAGCTCACTATGATAGGGAAGGCTCAAACGCAGAA  645

seq1  ACAGCTTGTGGGTGTACCAGCAGGAGAGCAAAATTGCTGTCTAACACCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGTGGGTGTACCAGCAGGAGAGCAAAATTGCTGTCTAACACCTG  695

seq1  AACGATCAGGAACGAAGTTCAATCTTAGTGTTCATCTGGCTTTCTCCATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCAGGAACGAAGTTCAATCTTAGTGTTCATCTGGCTTTCTCCATT  745

seq1  TCCCTTTTCATGCAGTCTAGGCCCTCAGTCCATGGTACAAAGGGTTCTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTCATGCAGTCTAGGCCCTCAGTCCATGGTACAAAGGGTTCTTT  795

seq1  GGAACAGTTAGAACTGTTTGAACGCTCAAACACAGGCTCAGGTACATCCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTTAGAACTGTTTGAACGCTCAAACACAGGCTCAGGTACATCCC  845

seq1  TTATGTGAATATGAACCCAATCAAGTTTACCATGAGCATTAACCATCACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAATATGAACCCAATCAAGTTTACCATGAGCATTAACCATCACA  895

seq1  GCCTCTAACATGGGTGTGGGTAACAAATATTCAGACCACTGGGTCTTTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAACATGGGTGTGGGTAACAAATATTCAGACCACTGGGTCTTTTG  945

seq1  CAGCCCCCGTCATTTTGCCCAATTTCTGCACATACCATCCTGTCGATTGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCGTCATTTTGCCCAATTTCTGCACATACCATCCTGTCGATTGC  995

seq1  CTCCTTGGGAAAATGATAAGCTGTTCACTGTTTTCTTCCACTGTAATTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGGAAAATGATAAGCTGTTCACTGTTTTCTTCCACTGTAATTTT  1045

seq1  CTCTGCCAGAATCTGTGTTCCTTTCAGCTTGTTAGGCTTCGATATCTCAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGAATCTGTGTTCCTTTCAGCTTGTTAGGCTTCGATATCTCAC  1095

seq1  TTTGGCAAATAGAATTC  1110
      |||||||||||||||||
seq2  TTTGGCAAATAGAATTC  1112


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