BAC Information

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BAC

Clone NameB6Ng01-293G17
Chromosome3 (Build37)
Map Location 48,920,258 - 48,921,393
singlet/doubletsinglet
Overlap geneEG666230
Upstream geneLOC666208, 1700018B24Rik, LOC100039404
Downstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293G17.bB6Ng01-293G17.g
ACCGA089806GA089807
length1,2081,145
definitionB6Ng01-293G17.b B6Ng01-293G17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccctattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ttatctgatttagaataggtaaagatactttcccaatctgttggtggtct
ttttgtcttactgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacatcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttacccac
tttctcctctataagtttcagtgtctctggctttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggattgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtagaagatcaagt
gacaataggtgtgtgggttcatttctgggtcttcaattctattttattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagagattcttt
tatccttgagaagactttttgcaatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagtcattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagattcacgccaagatattttatattat
ttgtgactattgagaagggtgtgtttccctaatttctttctcagctgttt
attctttgtgtaagaggaaggccattgacttgttgagtttattttatatt
ccagcttatatatataatattccatatgtatatattggaatattagtccc
tatctgatagaatagtaaagatccgtttcgacctgtgtggccccttgtct
atgacgaacttttgccttacagaacttgccagatttctatgaggttccaa
ttggttca
gaattctcactggatcatgtcctagagaacactagatcatgtcttagaga
catctctaataataacaatgtagagtgtatggaaaaagaatatatacaaa
tttcaggatgcctatccagataaaacagggatattatacaattgaaattt
gtttttttttttttttaaagagttgtgtaaattacactatttcaggtaat
gatctcatctcctctttagatgtcgtggaaagacgtcataagaaacaagg
gactgttttgacatcctgcttccacaggggctctgtgccccaccaggacc
aagaatgccctgccccgatatttaatacaggaaaactctttggaaaagaa
ctgtgttcgatttgtcatgagggaaaatggcccaccgtaatttggtaggt
ctcatgtggttcatttctggttctcctaaggaaattctggtaaaacaatt
agtgttgattttagggtgggatgtgcacatgaaaaaattgatgcacaaaa
ccagtttgaggtcctccttgactttgtcagcccttacactgtacctgtgc
aaaccatttgtctggttctcacaagcacataggtttctgttctgcatgaa
tggtaacaggtatttccctttcttctattcaggatattctatccctcata
aaggaaaaagaccccaaaactgtgggcatattcctgatatctccaaatgc
gaaatcatgcaaaaatcctaaaggacaaatttaaatttgggcagaggtcc
atattaaaaaggacttagttcatgaaatcgcctgtatcttaaaggtaggg
aaattccttgtactacccaccctcaggattcctctgagtttacatctagt
agtttccttcatcatgcattcccttgagagatagtatatacatgtgagag
aaatttgggtaagctcaaagggtcttctgtatttcacaacataaggagta
cccacacaagcaaaaatttaagtcaaaatgaactgtaatgtaactaagta
ctttcattggattttttcatgggccatggtgcaggtccacttcaacaaca
tgcatttgaaatgttcacttgttagtgtgcatagttcatattgtattgac
ctaccgagggttcttattttgggttcctggtccctctcccatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48920258_48921393
seq2: B6Ng01-293G17.g_65_1209 (reverse)

seq1  AAAATGGGAGAGAGA-CAGAGACAAAAAATAAAGAACACT-GGTAGTCAA  48
      |||||||||||| || |||  ||  ||||| |||||| || |||||   |
seq2  AAAATGGGAGAGGGACCAGGAACCCAAAAT-AAGAACCCTCGGTAGGTCA  49

seq1  ATAC-ATATG-ACTATGCACACTTACCAGGTGACA-TTCAAATGCATGT-  94
      |||| ||||| |||||||||||| || ||   ||| ||||||||||||| 
seq2  ATACAATATGAACTATGCACACTAACAAGTGAACATTTCAAATGCATGTT  99

seq1  -GTGAAGTGACCCTGCA-CATGG-CCATGAAAAAATCCAATGAAAGTTAC  141
        |||||||  |||||| ||||| |||||||||||||||||||||| |||
seq2  GTTGAAGTGGACCTGCACCATGGCCCATGAAAAAATCCAATGAAAG-TAC  148

seq1  TTAGTTACATTACAGTTCATTTTGACTT-AATTTTTGCTTGTGTTGGTAC  190
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TTAGTTACATTACAGTTCATTTTGACTTAAATTTTTGCTTGTGTGGGTAC  198

seq1  TCCTTATGTTGTGAATAACAGAAGACCCTTTGAGCTTA-CCAAATTTCTC  239
      |||||||||||||||  ||||||||||||||||||||| |||||||||||
seq2  TCCTTATGTTGTGAAATACAGAAGACCCTTTGAGCTTACCCAAATTTCTC  248

seq1  TCACATGTATATACTATCTCTCAAGGGAATGCATGATGAAGGAAACTACT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTATATACTATCTCTCAAGGGAATGCATGATGAAGGAAACTACT  298

seq1  AGATGTAAACTCAGAGGAATCCTGAGGGTGGGTAGTACAAGGAATTTCCC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAACTCAGAGGAATCCTGAGGGTGGGTAGTACAAGGAATTTCCC  348

seq1  TACCTTTAAGATACAGGCGATTTCATGAACTAAGTCCTTTTTAATATGGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAAGATACAGGCGATTTCATGAACTAAGTCCTTTTTAATATGGA  398

seq1  CCTCTGCCCAAATTTAAATTTGTCCTTTAGGATTTTTGCATGATTTCGCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCAAATTTAAATTTGTCCTTTAGGATTTTTGCATGATTTCGCA  448

seq1  TTTGGAGATATCAGGAATATGCCCACAGTTTTGGGGTCTTTTTCCTTTAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGATATCAGGAATATGCCCACAGTTTTGGGGTCTTTTTCCTTTAT  498

seq1  GAGGGATAGAATATCCTGAATAGAAGAAAGGGAAATACCTGTTACCATTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATAGAATATCCTGAATAGAAGAAAGGGAAATACCTGTTACCATTC  548

seq1  ATGCAGAACAGAAACCTATGTGCTTGTGAGAACCAGACAAATGGTTTGCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAACAGAAACCTATGTGCTTGTGAGAACCAGACAAATGGTTTGCA  598

seq1  CAGGTACAGTGTAAGGGCTGACAAAGTCAAGGAGGACCTCAAACTGGTTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACAGTGTAAGGGCTGACAAAGTCAAGGAGGACCTCAAACTGGTTT  648

seq1  TGTGCATCAATTTTTTCATGTGCACATCCCACCCTAAAATCAACACTAAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCAATTTTTTCATGTGCACATCCCACCCTAAAATCAACACTAAT  698

seq1  TGTTTTACCAGAATTTCCTTAGGAGAACCAGAAATGAACCACATGAGACC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACCAGAATTTCCTTAGGAGAACCAGAAATGAACCACATGAGACC  748

seq1  TACCAAATTACGGTGGGCCATTTTCCCTCATGACAAATCGAACACAGTTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAATTACGGTGGGCCATTTTCCCTCATGACAAATCGAACACAGTTC  798

seq1  TTTTCCAAAGAGTTTTCCTGTATTAAATATCGGGGCAGGGCATTCTTGGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAAGAGTTTTCCTGTATTAAATATCGGGGCAGGGCATTCTTGGT  848

seq1  CCTGGTGGGGCACAGAGCCCCTGTGGAAGCAGGATGTCAAAACAGTCCCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGGGCACAGAGCCCCTGTGGAAGCAGGATGTCAAAACAGTCCCT  898

seq1  TGTTTCTTATGACGTCTTTCCACGACATCTAAAGAGGAGATGAGATCATT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTATGACGTCTTTCCACGACATCTAAAGAGGAGATGAGATCATT  948

seq1  ACCTGAAATAGTGTAATTTACACAACTCTTTAAAAAAAAAAAAAAACAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAATAGTGTAATTTACACAACTCTTTAAAAAAAAAAAAAAACAAA  998

seq1  TTTCAATTGTATAATATCCCTGTTTTATCTGGATAGGCATCCTGAAATTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTGTATAATATCCCTGTTTTATCTGGATAGGCATCCTGAAATTT  1048

seq1  GTATATATTCTTTTTCCATACACTCTACATTGTTATTATTAGAGATGTCT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATTCTTTTTCCATACACTCTACATTGTTATTATTAGAGATGTCT  1098

seq1  CTAAGACATGATCTAGTGTTCTCTAGGACATGATCCAGTGAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACATGATCTAGTGTTCTCTAGGACATGATCCAGTGAGAATTC  1145