BAC Information

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BAC

Clone NameB6Ng01-293G19
Chromosome3 (Build37)
Map Location 90,651,953 - 90,652,979
singlet/doubletsinglet
Overlap genenone
Upstream geneShe, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
Downstream geneLOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293G19.bB6Ng01-293G19.g
ACCGA089810GA089811
length1,0191,178
definitionB6Ng01-293G19.b B6Ng01-293G19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacacctccagtgacagagcctttgctgcatctatgtggaaga
tgcaggaattttatccctaattgctgtagactgaagccccctctctcact
aaccaagtattaccttgaaggaatttggcatatcatcattcaccaggtct
ttgaattccttctggctcagggtgtctgggtctccctcttttccagtgtg
ctggtgaaagattttgattatatttctttatggcttgttccatctgtgac
ttttaaggcagtttattttttcactctatttgaatccttgagaatcaaat
gtacaaggaaaggaaaagtctgtcaagcgtactggttcttgtctcttccc
tctatcagggtagtaagggggcatacacaataaaagaaaggacagggagt
cacttggtggggaaccattgtgtcacacatgtgtgtgataagaaactttc
agaaattgaaagaggctacaacactgtcagggcaaggcaggagggaacca
gaagaatggtatttaaaaaatgtcatagacttctggtttttttctggccc
tgaagccaaccctctgtcacaggttccatgaccaaattgcactggaaatg
agttaccctcccaggagtgtgtgcaagccagtgagcacaagtaagaccac
cactgctgcttagaggaaccttgaggacacaggaactgagaagctaactg
ggtcaggagtgtttcagtttctgtctgccccaggagatgatcctgtgtca
cagagctacatatacaaataatgcctatagagagctgctctcccaggagt
gcctacacatttgcgaacacaggtaagaccaccacttctcttcaaatttc
tggcccaaaagggctctcccagagccattaggacataagaaccaaggatc
agcaggccaggatccttctggtttctgtctgcatccaagtgctgaccctg
tatcacagctctccatacttacttcctcccagctagaactgtctccagga
tactgacacacagctcgca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggtctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtaccaggagctaaagggatcttcacctatag
ttgaacacattatgaactaaccagtacccctgagcctctgactctagctg
caatatggtatcaaagatgcctaggtcgtcaatcactggaagaaaggccc
aatgacaccgcagacttggtgcctggtacaggtacgtcatgtctatgggg
gggtacttgagcacagcatcagacgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90651953_90652979
seq2: B6Ng01-293G19.b_46_1064

seq1  GAATTCTCACACCTCCAGTGACAGAGCCTTTGCTGCATCTATGTGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACACCTCCAGTGACAGAGCCTTTGCTGCATCTATGTGGAAGA  50

seq1  TGCAGGAATTTTATCCCTAATTGCTGTAGACTGAAGCCCCCTCTCTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAATTTTATCCCTAATTGCTGTAGACTGAAGCCCCCTCTCTCACT  100

seq1  AACCAAGTATTACCTTGAAGGAATTTGGCATATCATCATTCACCAGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTATTACCTTGAAGGAATTTGGCATATCATCATTCACCAGGTCT  150

seq1  TTGAATTCCTTCTGGCTCAGGGTGTCTGGGTCTCCCTCTTTTCCAGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCCTTCTGGCTCAGGGTGTCTGGGTCTCCCTCTTTTCCAGTGTG  200

seq1  CTGGTGAAAGATTTTGATTATATTTCTTTATGGCTTGTTCCATCTGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAAGATTTTGATTATATTTCTTTATGGCTTGTTCCATCTGTGAC  250

seq1  TTTTAAGGCAGTTTATTTTTTCACTCTATTTGAATCCTTGAGAATCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGCAGTTTATTTTTTCACTCTATTTGAATCCTTGAGAATCAAAT  300

seq1  GTACAAGGAAAGGAAAAGTCTGTCAAGCGTACTGGTTCTTGTCTCTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGAAAGGAAAAGTCTGTCAAGCGTACTGGTTCTTGTCTCTTCCC  350

seq1  TCTATCAGGGTAGTAAGGGGGCATACACAATAAAAGAAAGGACAGGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGGGTAGTAAGGGGGCATACACAATAAAAGAAAGGACAGGGAGT  400

seq1  CACTTGGTGGGGAACCATTGTGTCACACATGTGTGTGATAAGAAACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTGGGGAACCATTGTGTCACACATGTGTGTGATAAGAAACTTTC  450

seq1  AGAAATTGAAAGAGGCTACAACACTGTCAGGGCAAGGCAGGAGGGAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGAAAGAGGCTACAACACTGTCAGGGCAAGGCAGGAGGGAACCA  500

seq1  GAAGAATGGTATTTAAAAAATGTCATAGACTTCTGGTTTTTTTCTGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGTATTTAAAAAATGTCATAGACTTCTGGTTTTTTTCTGGCCC  550

seq1  TGAAGCCAACCCTCTGTCACAGGTTCCATGACCAAATTGCACTGGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAACCCTCTGTCACAGGTTCCATGACCAAATTGCACTGGAAATG  600

seq1  AGTTACCCTCCCAGGAGTGTGTGCAAGCCAGTGAGCACAAGTAAGACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCCTCCCAGGAGTGTGTGCAAGCCAGTGAGCACAAGTAAGACCAC  650

seq1  CACTGCTGCTTAGAGGAACCTTGAGGACACAGGAACTGAGAAGCTAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGCTTAGAGGAACCTTGAGGACACAGGAACTGAGAAGCTAACTG  700

seq1  GGTCAGGAGTGTTTCAGTTTCTGTCTGCCCCAGGAGATGATCCTGTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGAGTGTTTCAGTTTCTGTCTGCCCCAGGAGATGATCCTGTGTCA  750

seq1  CAGAGCTACATATACAAATAATGCCTATAGAGAGCTGCTCTCCCAGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACATATACAAATAATGCCTATAGAGAGCTGCTCTCCCAGGAGT  800

seq1  GCCTACACATTTGCGAACACAGGTAAGACCACCACTTCTCTTCAAATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACACATTTGCGAACACAGGTAAGACCACCACTTCTCTTCAAATTTC  850

seq1  TGGCCCAAAAGGGGCTCTCCCAGAGCCATTAGGACATAAGAACCAAGGAT  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAAAA-GGGCTCTCCCAGAGCCATTAGGACATAAGAACCAAGGAT  899

seq1  CAGCAGGGGCCAGGATCCTTCTGGTTTCTGTCTGCATCCAAGTGCTGACC  950
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCA--GGCCAGGATCCTTCTGGTTTCTGTCTGCATCCAAGTGCTGACC  947

seq1  CTGTATCACAGCTCTCCATACTTAACTTCCTCCCAGCTAGAACTGGTCTT  1000
      ||||||||||||||||||||||| |||||||||||||||||||| ||| |
seq2  CTGTATCACAGCTCTCCATACTT-ACTTCCTCCCAGCTAGAACT-GTC-T  994

seq1  CCAGGAATACTGACACACAGGCTCGCA  1027
      ||||| ||||||||||||| |||||||
seq2  CCAGG-ATACTGACACACA-GCTCGCA  1019