BAC Information

Click to search

BAC

Clone NameB6Ng01-293J18
Chromosome3 (Build37)15 (Build37)
Map Location 3,267,073 - 3,268,22162,658,262 - 62,658,559
singlet/doubletsingletsinglet
Overlap geneLOC667655
Upstream genenone
Downstream geneLOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293J18.bB6Ng01-293J18.g
ACCGA089948GA089949
length1,150334
definitionB6Ng01-293J18.b B6Ng01-293J18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,267,073 - 3,268,221)(62,658,262 - 62,658,559)
sequence
gaattccatgaaaacacacacacacacacacacacacatgtatatatgat
atgtaaaaatcaagtgaaaagttgcatacaacttatacagtttaccaaca
aagagacagtaaagaagaaattacatagtgacacagaaaaataaaaggca
ttatctaggcacacagaaggtgttacatagagatacagtataaagtggta
ttacatagggatacagttggaggagacattacataatgtctgaatacaaa
aatgtcttgcatgagaacacagtctaagcaatgtgtggccctatgtggta
taaatggagttctatgataaaggcatacaagttatgatatgatcatgaaa
agagaagatatgtaaccatgtaacaaatattgtactcactagaacatcac
agcaaaaggcaactggttgataaactgatctagagtggaatagtaagcag
agatggaatagtaacatacacctacagaagaggttaaagttcttgatctt
cttggatctcaatgtaatacagtagactactataggaaactactacagag
aatgtaggacttatatgacaaaacattgatagagataagaactagaccca
ggccatttacaaaataaggccagtaattgacatctgggacattacttttg
tatatatagcaaaggaaacagccaatagagtaaagagacagtctatagaa
tgagaataaatattctttgtcagctgtgtctgactgaaaactagtatctc
taaaataaaaggaacttcaaacagtacacatctaaaaattgccctaaaca
gaaaataagttatatggccagtgtttgcaactgagcccaacaacctgagt
ttgatcattggtagtcaaatggcagaaaatcagaatcaattatcaaagat
tttcttcatactgacaatcacatattgtggcacacacatctcctcagccc
ctaaacacatgtaaataagtgaataaatgggaaagtatttcaaaatacgc
tatggagttaaactgttcccaaagaaaacaatagatataaacatttttga
aagtactttacacttctttgcatttgaaaatacaaatttaaaactattat
tgaaaattctgttctccaccctcagtatgttccctttattagaaaacaaa


gaattctatactgaggaaactcgaatggctgagaaacagcaaaagaaatg
ttctacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctctcaccagtcagaatgcctaagatcaaaaaataagctgacagc
agatgctggtgagtatgtggagaaagatgtgggattgcaatctggaacaa
ccactgtggaagtcatttttggtggttcctcaaaaaattggagatagtcc
tatgtgaggacccagctataaggacacatgcttcatatatatatatatat
atatatatatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3267073_3268221
seq2: B6Ng01-293J18.b_48_1197 (reverse)

seq1  TTTGTTTTCTTAATAAGGG-ACATACTGAGG--TGAG-ACAGATTTTTCA  46
      |||||||||| |  ||||| |||||||||||   ||| ||||| ||||||
seq2  TTTGTTTTCTAATAAAGGGAACATACTGAGGGTGGAGAACAGAATTTTCA  50

seq1  AT-ATAGTTTT-AATTTGTATTTTCATAATTGCAAAG-AGTGTTAAGTAC  93
      || |||||||| |||||||||||||  || ||||||| ||||| ||||||
seq2  ATAATAGTTTTAAATTTGTATTTTC--AAATGCAAAGAAGTGTAAAGTAC  98

seq1  TTTCAAAAATGTTTATTATCTATTTGTTTTTCTTTTGGGAACAGTTTAAC  143
      ||||||||||||||| |||||| |||||||   |||||||||||||||||
seq2  TTTCAAAAATGTTTA-TATCTA-TTGTTTT--CTTTGGGAACAGTTTAAC  144

seq1  TCCATAGCGTATTTTGAAATACTTTCCCATTTATTCACTTATTTACATGT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGCGTATTTTGAAATACTTTCCCATTTATTCACTTATTTACATGT  194

seq1  GTTTAGGGGCTGAGGAGATGTGTGTGCCACAATATGTGATTGTCAGTATG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGGCTGAGGAGATGTGTGTGCCACAATATGTGATTGTCAGTATG  244

seq1  AAGAAAATCTTTGATAATTGATTCTGATTTTCTGCCATTTGACTACCAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCTTTGATAATTGATTCTGATTTTCTGCCATTTGACTACCAAT  294

seq1  GATCAAACTCAGGTTGTTGGGCTCAGTTGCAAACACTGGCCATATAACTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACTCAGGTTGTTGGGCTCAGTTGCAAACACTGGCCATATAACTT  344

seq1  ATTTTCTGTTTAGGGCAATTTTTAGATGTGTACTGTTTGAAGTTCCTTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTTTAGGGCAATTTTTAGATGTGTACTGTTTGAAGTTCCTTTT  394

seq1  ATTTTAGAGATACTAGTTTTCAGTCAGACACAGCTGACAAAGAATATTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGATACTAGTTTTCAGTCAGACACAGCTGACAAAGAATATTTA  444

seq1  TTCTCATTCTATAGACTGTCTCTTTACTCTATTGGCTGTTTCCTTTGCTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTCTATAGACTGTCTCTTTACTCTATTGGCTGTTTCCTTTGCTA  494

seq1  TATATACAAAAGTAATGTCCCAGATGTCAATTACTGGCCTTATTTTGTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAAAAGTAATGTCCCAGATGTCAATTACTGGCCTTATTTTGTAA  544

seq1  ATGGCCTGGGTCTAGTTCTTATCTCTATCAATGTTTTGTCATATAAGTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGGGTCTAGTTCTTATCTCTATCAATGTTTTGTCATATAAGTCC  594

seq1  TACATTCTCTGTAGTAGTTTCCTATAGTAGTCTACTGTATTACATTGAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTCTGTAGTAGTTTCCTATAGTAGTCTACTGTATTACATTGAGA  644

seq1  TCCAAGAAGATCAAGAACTTTAACCTCTTCTGTAGGTGTATGTTACTATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAGATCAAGAACTTTAACCTCTTCTGTAGGTGTATGTTACTATT  694

seq1  CCATCTCTGCTTACTATTCCACTCTAGATCAGTTTATCAACCAGTTGCCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGCTTACTATTCCACTCTAGATCAGTTTATCAACCAGTTGCCT  744

seq1  TTTGCTGTGATGTTCTAGTGAGTACAATATTTGTTACATGGTTACATATC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGATGTTCTAGTGAGTACAATATTTGTTACATGGTTACATATC  794

seq1  TTCTCTTTTCATGATCATATCATAACTTGTATGCCTTTATCATAGAACTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTCATGATCATATCATAACTTGTATGCCTTTATCATAGAACTC  844

seq1  CATTTATACCACATAGGGCCACACATTGCTTAGACTGTGTTCTCATGCAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACCACATAGGGCCACACATTGCTTAGACTGTGTTCTCATGCAA  894

seq1  GACATTTTTGTATTCAGACATTATGTAATGTCTCCTCCAACTGTATCCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTGTATTCAGACATTATGTAATGTCTCCTCCAACTGTATCCCT  944

seq1  ATGTAATACCACTTTATACTGTATCTCTATGTAACACCTTCTGTGTGCCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATACCACTTTATACTGTATCTCTATGTAACACCTTCTGTGTGCCT  994

seq1  AGATAATGCCTTTTATTTTTCTGTGTCACTATGTAATTTCTTCTTTACTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGCCTTTTATTTTTCTGTGTCACTATGTAATTTCTTCTTTACTG  1044

seq1  TCTCTTTGTTGGTAAACTGTATAAGTTGTATGCAACTTTTCACTTGATTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGTTGGTAAACTGTATAAGTTGTATGCAACTTTTCACTTGATTT  1094

seq1  TTACATATCATATATACATGTGTGTGTGTGTGTGTGTGTGTGTTTTCATG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATCATATATACATGTGTGTGTGTGTGTGTGTGTGTGTTTTCATG  1144

seq1  GAATTC  1149
      ||||||
seq2  GAATTC  1150


seq1: chr15_62658262_62658559
seq2: B6Ng01-293J18.g_113_349

seq1  AAATGTTCAGCATCCTTAATCATCAGGGATATGCAAATCAAAACAACCCT  50
      ||||||||  |||||||| |||||||||| ||||||||||||||||||||
seq2  AAATGTTCTACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCT  50

seq1  GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATGCAGGTG  100
      ||||||||||||| |||||||||||||| |||||||||||||   || ||
seq2  GAGATTCCACCTCTCACCAGTCAGAATGCCTAAGATCAAAAAATAAGCTG  100

seq1  ACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT  150
      |||||||||||||||||| |||||||||||||                  
seq2  ACAGCAGATGCTGGTGAGTATGTGGAGAAAGA------------------  132

seq1  TGGTGGGATTGCAAGCTGGTACAACCGCTCTGGAAATCAGTCTT-GCGGT  199
        |||||||||||| |||| |||||| || ||||| ||| | || | |||
seq2  -TGTGGGATTGCAATCTGGAACAACCACTGTGGAAGTCATTTTTGGTGGT  181

seq1  TCCTCAAAAAATTTGACATAGTACTACTGGAGGATCCCGCAATACCTCTC  249
      ||||||||||||| || ||||| |||   ||||| || || ||       
seq2  TCCTCAAAAAATTGGAGATAGTCCTATGTGAGGACCCAGCTAT-------  224

seq1  TTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCT  298
                                          |||||||||||||
seq2  ------------------------------------AAGGACACATGCT  237


| Home | SequenceCutter | Blast | Download |