BAC Information

Click to search

BAC

Clone NameB6Ng01-293L10
Chromosome3 (Build37)
Map Location 49,225,622 - 49,226,794
singlet/doubletsinglet
Overlap geneLOC676568
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519
Downstream geneLOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293L10.bB6Ng01-293L10.g
ACCGA090026GA090027
length1,1831,163
definitionB6Ng01-293L10.b B6Ng01-293L10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgacaaaattcaagacagtctatcagagctaaagcggggagag
agagtaggagcaaagaggaaacaaggtgcaccaattaagcatacaggcct
ttccaggggtcttgaacctgaggaaaaattaatgtcagggaagaatacct
ggggagagattggaagaaaggagaaggaaaaagaaaagaaaaaagatcaa
tcagaggaggtttctaggagaaggaacttatacccgccactagatgagtt
taagcggctagctcttagtagctcagaatcagataaaggactggaaatgt
aaacgaggaaaatacctaataaaaaaaaataaattaaaaaaaaagtgagc
tactcagtccagaaaaaggcaaaaagcagctggcaaaagccagttcactg
ctcggcctcctgactggcggcttcagggtcctagtgcacatccgccctat
gtgcagaggttccattcagaaccttatgtgcagaggtgccattcagactc
gttcattccaaaagaggaacagagaaaagtgcagcaagcgttcccagttt
tcgaaggagctgagggagggcgtgttcacgctcctgtagagtatatacag
attaaggagctcgcagaagcagttcgcaattatggagtcagcactaattt
cactttagcacaagtagaaaggcttgtgaatcacgctatgactcctggtg
attggcagactgtagtaaaagctgcagcccccagtatgggaatgtatctt
gaatggaaagccttgtggcaggactcctgccagatgcaggcaagggccaa
tgccaccatggaaggggaccaaagaacgtggacatttgaattacttacag
gttagggacagcatgctgctaaccaaacagattatcattgggagagcgta
tgctcagatctcagctgccgctgtgaaaggcatggaaaggcactctctaa
gaaggagaggcaagtgggcatttgaccaagattactcaaggtgcacagga
gtccttctcagactttgtggccagatgacgagcagcagtaagatatttgg
aagaccagagcagctatgccttatgacattgttatgacagctagcagatg
cagatcagccataacttagaagagtaaagggtacgactgcttaagttgcc
atggagctgaggccattacctattgccgagatt
gaattctcctttctgctaaaacaatgattttgttttcctggcttgtagaa
agaagggtgacaaaatagtaatttaaatacattaagagtgttatgaaaaa
aaaagaaaagaaaatcagatctcacaaccatctaacaagaaaatcgccct
ctaagtttataacccctgaattcttttcagagttttgaactacatatttt
tagattccaatactcataagtacaatgtgatttgcaaccatgcaaaatga
cagagaccctctgagtttgctctgttttgtcacagatttttctggtaata
tttatgaccaaaaagtctccaaaacctttcagagaagacttgattttagt
ttgttacaaaatgtcacttttttatccacaaggaacaaaaaccttatgtt
cccagaatcctccatctaacgctgggggcataaaggaaacagaacaggaa
ctcagcagcttcctcggagggaggacatccatcgctggccatcatgcact
gctgaaaagtctagctgctcctctcctctatgagggcattataggtgtgt
atagatatcctactaccataacttagaagttgaatcatttagcagtaaaa
ctatgaattataacaaacagcagtgaagaatttactaaaccatgtgaagg
gaaacttcacctctgtgttataatttcctattgtaagaaattgctttcaa
attttggtatctctttccactggtcctgaatttatttaagaagtaaatcc
aagaaatgaaattaaggaattaattaagatttgtcactcactttgatata
ttgagcattaatttagatttgtataatacatagaatagcaattcaatacc
aaaatgggttttccctacataaaagctctgctatcctttgtagatgaggc
taacctcagacagagatcctcccggctctgcttctgagatgtgggaataa
aggcatgtgccaccatgcttttcacttatgcacgccttaaaatatagcaa
aatatacccacatggggagacatagacactatgatctcagattgagcact
agtttcagttggtggagcaaagggctgtatagaagtgcagcaagccaggt
cggtggaaaggcgatctgtgtatttaatttggccgtgactgttccagtca
gaaattcccacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49225622_49226794
seq2: B6Ng01-293L10.g_68_1230 (reverse)

seq1  CTGTGTGAATTTCTGACT-GAACAGTCACGGGCAAATATAAATTAACAAC  49
      ||||| |||||||||||| |||||||||||| ||||| |||||  || ||
seq2  CTGTGGGAATTTCTGACTGGAACAGTCACGGCCAAAT-TAAAT--AC-AC  46

seq1  AGTATCTGCCCTTCACAACACGACTTGCCTGGCTGCACTTCTATTACAGC  99
      || ||| ||| ||| ||   |||| || || |||||||||||| ||||||
seq2  AG-ATC-GCCTTTC-CA--CCGACCTGGCTTGCTGCACTTCTA-TACAGC  90

seq1  CCTTTGCTTCCCACCACCTG-AACTAGTGCTCAAATCTGAGATCATAGTG  148
      ||||||||  |||||| ||| ||||||||||| |||||||||||||||||
seq2  CCTTTGCT--CCACCAACTGAAACTAGTGCTC-AATCTGAGATCATAGTG  137

seq1  TCTATGTCT-CCCATGTGGGTATATTTTGCTATATTTTAAGGCGTGCATA  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCTCCCCATGTGGGTATATTTTGCTATATTTTAAGGCGTGCATA  187

seq1  AGTGAAAAGCATGGTGGCACATGCCTTTATTCCCACATCTCAGAAGCAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGCATGGTGGCACATGCCTTTATTCCCACATCTCAGAAGCAGA  237

seq1  GCCGGGAGGATCTCTGTCTGAGGTTAGCCTCATCTACAAAGGATAGCAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGAGGATCTCTGTCTGAGGTTAGCCTCATCTACAAAGGATAGCAGA  287

seq1  GCTTTTATGTAGGGAAAACCCATTTTGGTATTGAATTGCTATTCTATGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATGTAGGGAAAACCCATTTTGGTATTGAATTGCTATTCTATGTA  337

seq1  TTATACAAATCTAAATTAATGCTCAATATATCAAAGTGAGTGACAAATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAATCTAAATTAATGCTCAATATATCAAAGTGAGTGACAAATCT  387

seq1  TAATTAATTCCTTAATTTCATTTCTTGGATTTACTTCTTAAATAAATTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTCCTTAATTTCATTTCTTGGATTTACTTCTTAAATAAATTCA  437

seq1  GGACCAGTGGAAAGAGATACCAAAATTTGAAAGCAATTTCTTACAATAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGTGGAAAGAGATACCAAAATTTGAAAGCAATTTCTTACAATAGG  487

seq1  AAATTATAACACAGAGGTGAAGTTTCCCTTCACATGGTTTAGTAAATTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAACACAGAGGTGAAGTTTCCCTTCACATGGTTTAGTAAATTCT  537

seq1  TCACTGCTGTTTGTTATAATTCATAGTTTTACTGCTAAATGATTCAACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTGTTTGTTATAATTCATAGTTTTACTGCTAAATGATTCAACTT  587

seq1  CTAAGTTATGGTAGTAGGATATCTATACACACCTATAATGCCCTCATAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTATGGTAGTAGGATATCTATACACACCTATAATGCCCTCATAGA  637

seq1  GGAGAGGAGCAGCTAGACTTTTCAGCAGTGCATGATGGCCAGCGATGGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGCAGCTAGACTTTTCAGCAGTGCATGATGGCCAGCGATGGAT  687

seq1  GTCCTCCCTCCGAGGAAGCTGCTGAGTTCCTGTTCTGTTTCCTTTATGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCCTCCGAGGAAGCTGCTGAGTTCCTGTTCTGTTTCCTTTATGCC  737

seq1  CCCAGCGTTAGATGGAGGATTCTGGGAACATAAGGTTTTTGTTCCTTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGTTAGATGGAGGATTCTGGGAACATAAGGTTTTTGTTCCTTGTG  787

seq1  GATAAAAAAGTGACATTTTGTAACAAACTAAAATCAAGTCTTCTCTGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAAAGTGACATTTTGTAACAAACTAAAATCAAGTCTTCTCTGAAA  837

seq1  GGTTTTGGAGACTTTTTGGTCATAAATATTACCAGAAAAATCTGTGACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGAGACTTTTTGGTCATAAATATTACCAGAAAAATCTGTGACAA  887

seq1  AACAGAGCAAACTCAGAGGGTCTCTGTCATTTTGCATGGTTGCAAATCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCAAACTCAGAGGGTCTCTGTCATTTTGCATGGTTGCAAATCAC  937

seq1  ATTGTACTTATGAGTATTGGAATCTAAAAATATGTAGTTCAAAACTCTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTTATGAGTATTGGAATCTAAAAATATGTAGTTCAAAACTCTGA  987

seq1  AAAGAATTCAGGGGTTATAAACTTAGAGGGCGATTTTCTTGTTAGATGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCAGGGGTTATAAACTTAGAGGGCGATTTTCTTGTTAGATGGT  1037

seq1  TGTGAGATCTGATTTTCTTTTCTTTTTTTTTCATAACACTCTTAATGTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATCTGATTTTCTTTTCTTTTTTTTTCATAACACTCTTAATGTAT  1087

seq1  TTAAATTACTATTTTGTCACCCTTCTTTCTACAAGCCAGGAAAACAAAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACTATTTTGTCACCCTTCTTTCTACAAGCCAGGAAAACAAAAT  1137

seq1  CATTGTTTTAGCAGAAAGGAGAATTC  1173
      ||||||||||||||||||||||||||
seq2  CATTGTTTTAGCAGAAAGGAGAATTC  1163