BAC Information

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BAC

Clone NameB6Ng01-293O19
Chromosome3 (Build37)
Map Location 21,816,379 - 22,006,721
singlet/doubletdoublet
Overlap geneLOC100040353, Tbl1xr1, LOC545506
Upstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
Downstream geneLOC675593, LOC100040378, LOC623751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293O19.bB6Ng01-293O19.g
ACCGA090186GA090187
length1,1921,036
definitionB6Ng01-293O19.b B6Ng01-293O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,816,379 - 21,817,587)(22,005,689 - 22,006,721)
sequence
gaattcctgaacacacacacacacagaaggtggatgttaccacaccccat
attgtcctttggtctctacacacaggcacacgcgttcacacctgcacaca
ccaggtcagcctgaaacatgctttgaagtaaaccagagctcccagctgca
aagactgagtgtctgtgacaaggacagagtccactcagtctaaatgctgt
cttagcaacattactctaatttcccctcctattgtacttgtacctaaggg
gtcataagggacgccccaccacaagagtgaggagagagatcttcccacac
tctgaaacctgcacagtgagaagggactttcctcttctgtgacagatggg
aatcccctgccaccatggcatctagaaaattaagcatatccttccatgga
gaggaaactgatcttgcctcccacctcttctaaactctcagagtagctat
tgatttgtgggagggagatgtccaggaacagattgtgtaagtattggtca
gaggtaatcctttgtgctgttcctcaggagccataaatcgtgtgtggttt
ttatgtatgattattatattgcatgtgtaagggagggcacatgtgtactg
tggaaaattggaagacgagacagaacaggcactctcttcccatctttaca
caggttccaaggttctaagtcaggtgaccaggcttgcaccaagagtttgt
aacacccatgagtcccaccactgccccatctggatttttttgagacagtg
tctctggttggcacccggggcttgacaattcagctaggctggctgggcat
caggctctagggatcctgtctccatttctggaatattggaatcacaagga
tccctccatgtagggcttttttaggtgggtgctgagagatgagctcagtc
cacgttgatcgtgaccacacccacatgagtgcctgaaccacttttccaat
tcacaacttaccttgagctcatgtcatacaatatagaatagcactgtgac
tttttccttctaccgctaccaagaatcaaagatctagggacccacctttc
ttcataaatctgctaccaatcaacctcggtcagtcaagaatggcctggag
aactaccggaccttgatcggtttccttggctttctagattctggatcggt
tcatcagtaaggtaagttcgaagaggtaacctcttttgggcg
gaattcaaacaggccaagaacctggaagcaggagctgaggcagagcccat
gaagggtgctgcttattagcttgctccttagaattccttcagcctgcaat
gtgataggacccaggacgaccacctcaggggaggcctacccactatggac
tgggcctccccctcaatcactaagaacaggacttagcaggcctcactgcg
gcccaaccttaggagacatcttctcagttgacgttctcacttctatgctc
actctagtttgtttcaggttgatataaaactagtcagcagagaagatgga
atgactctttcagatctacaaaagtagactaataaccagcagttctgctg
cataagaaacgttctactaaggcagaacgcaataccagatggatccattt
accatacagtggataatggggtgaggagaatggtaagcccttaagtagca
cttcaaggtgggtggtgagtttaaacgcctacaccatagagcttgaccta
acagcctaaagcagtaagccggtacaatgaagtgtttctattaatccaaa
gcagagagggaaactagctcaacaagcaagaccactccacatcatacata
agcagacctcacatataatcagactgaaaacaaatcaagagggaaacaca
cagaccatgccagctccactacagagagagatgaaatgacagcagaaaca
tcaggtacacagactgtcagagcacagaatatgagcacggtaaaaaagta
ataataaagggccaccacaacacagaggaaaaacaaaacactaagcgttc
ataaacctcatcctattacttcaaaatcaataaagcaaaaacaaagttcc
acaaagaaacagaacttagggccgagcaagttaagtatcttattctctgt
tactgactaaagagggaacagaaaaatcaggaatgctaaataaaaagatt
ttgaatattatcaaacaaactgggcctaccagatgtgagaacagtgaaat
taaatcagcaattcagcattggagagttctcaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_21816379_21817587
seq2: B6Ng01-293O19.b_48_1239

seq1  GAATTCCTGAACACACACACACACAGAAGGTGGATGTTACCACACCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAACACACACACACACAGAAGGTGGATGTTACCACACCCCAT  50

seq1  ATTGTCCTTTGGTCTCTACACACAGGCACACGCGTTCACACCTGCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTTTGGTCTCTACACACAGGCACACGCGTTCACACCTGCACACA  100

seq1  CCAGGTCAGCCTGAAACATGCTTTGAAGTAAACCAGAGCTCCCAGCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAGCCTGAAACATGCTTTGAAGTAAACCAGAGCTCCCAGCTGCA  150

seq1  AAGACTGAGTGTCTGTGACAAGGACAGAGTCCACTCAGTCTAAATGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAGTGTCTGTGACAAGGACAGAGTCCACTCAGTCTAAATGCTGT  200

seq1  CTTAGCAACATTACTCTAATTTCCCCTCCTATTGTACTTGTACCTAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAACATTACTCTAATTTCCCCTCCTATTGTACTTGTACCTAAGGG  250

seq1  GTCATAAGGGACGCCCCACCACAAGAGTGAGGAGAGAGATCTTCCCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAGGGACGCCCCACCACAAGAGTGAGGAGAGAGATCTTCCCACAC  300

seq1  TCTGAAACCTGCACAGTGAGAAGGGACTTTCCTCTTCTGTGACAGATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACCTGCACAGTGAGAAGGGACTTTCCTCTTCTGTGACAGATGGG  350

seq1  AATCCCCTGCCACCATGGCATCTAGAAAATTAAGCATATCCTTCCATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTGCCACCATGGCATCTAGAAAATTAAGCATATCCTTCCATGGA  400

seq1  GAGGAAACTGATCTTGCCTCCCACCTCTTCTAAACTCTCAGAGTAGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACTGATCTTGCCTCCCACCTCTTCTAAACTCTCAGAGTAGCTAT  450

seq1  TGATTTGTGGGAGGGAGATGTCCAGGAACAGATTGTGTAAGTATTGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTGGGAGGGAGATGTCCAGGAACAGATTGTGTAAGTATTGGTCA  500

seq1  GAGGTAATCCTTTGTGCTGTTCCTCAGGAGCCATAAATCGTGTGTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATCCTTTGTGCTGTTCCTCAGGAGCCATAAATCGTGTGTGGTTT  550

seq1  TTATGTATGATTATTATATTGCATGTGTAAGGGAGGGCACATGTGTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATGATTATTATATTGCATGTGTAAGGGAGGGCACATGTGTACTG  600

seq1  TGGAAAATTGGAAGACGAGACAGAACAGGCACTCTCTTCCCATCTTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTGGAAGACGAGACAGAACAGGCACTCTCTTCCCATCTTTACA  650

seq1  CAGGTTCCAAGGTTCTAAGTCAGGTGACCAGGCTTGCACCAAGAGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCAAGGTTCTAAGTCAGGTGACCAGGCTTGCACCAAGAGTTTGT  700

seq1  AACACCCATGAGTCCCACCACTGCCCCATCTGGATTTTTTTGAGACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCATGAGTCCCACCACTGCCCCATCTGGATTTTTTTGAGACAGTG  750

seq1  TCTCTGGTTGGCACCCGGGGCTTGACAATTCAGCTAGGCTGGCTGGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTTGGCACCCGGGGCTTGACAATTCAGCTAGGCTGGCTGGGCAT  800

seq1  CAGGCTCTAGGGATCCTGTCTCCATTTCTGGAATATTGGAATCACAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTAGGGATCCTGTCTCCATTTCTGGAATATTGGAATCACAAGGA  850

seq1  TCCCTCCATGTAGGGCTTTTTTAGGTGGGTGCTGAGAGATGAGCTCAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCCTCCATGTAGGGCTTTTTTAGGTGGGTGCTGAGAGATGAGCTCA-GT  899

seq1  CCACGTTGATCGTGACCACACCCACATGAGTGCCTGAACCACTTTTCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTGATCGTGACCACACCCACATGAGTGCCTGAACCACTTTTCCAA  949

seq1  TTCACAACTTACCTTTGAGCTCATGTCATAACAATATAGAATAGCACTGT  1000
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  TTCACAACTTACC-TTGAGCTCATGTCAT-ACAATATAGAATAGCACTGT  997

seq1  GAACTTTTCCCTTCTACCGCTACCAAG-ATCAAAGAACCTAGGACCCACC  1049
      | |||||| |||||||||||||||||| |||||||| |   |||||||||
seq2  G-ACTTTTTCCTTCTACCGCTACCAAGAATCAAAGATCTAGGGACCCACC  1046

seq1  -TTCTTCAATAATCTGCTACCATCAAACCCCGGGTCAG-CAGGGAAATGC  1097
       |||||||  ||||||||||||   |||| | |||||| || |  |||| 
seq2  TTTCTTCATAAATCTGCTACCAATCAACCTC-GGTCAGTCAAG--AATGG  1093

seq1  CCTGGAGAACATACCGAACCTGGGTTCTGTTCCCTGGCTTTCTTGGGTTT  1147
      |||||||||| ||||| |||| | |    |||| |||||||||   | ||
seq2  CCTGGAGAAC-TACCGGACCTTGATCGGTTTCCTTGGCTTTCT--AGATT  1140

seq1  CTGGGATCGGGTTTCATCAGGCAAAAGGTGAAGGTGCGGAGGAGGTAGAA  1197
      || |||||||  ||||||||    ||||| ||| |   || |||||| | 
seq2  CT-GGATCGG--TTCATCAG---TAAGGT-AAGTT--CGAAGAGGTA-AC  1180

seq1  CTCTTTTGGGCG  1209
      ||||||||||||
seq2  CTCTTTTGGGCG  1192

seq1: chr3_22005689_22006721
seq2: B6Ng01-293O19.g_66_1101 (reverse)

seq1  TTCCTGAGAACTCTCCAATGCTG-ATTGCTGATTTTATTTCACTGTTCTC  49
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  TTCCTGAGAACTCTCCAATGCTGAATTGCTGATTTAATTTCACTGTTCTC  50

seq1  ACATCTGTTAGG-CCAGTTTGTTTGATAATATTC-AAATC-TTTTATTTA  96
      ||||||| |||| ||||||||||||||||||||| ||||| |||||||||
seq2  ACATCTGGTAGGCCCAGTTTGTTTGATAATATTCAAAATCTTTTTATTTA  100

seq1  GCATTTCCTGATTTTTCTGTTCCCTCTTTAGTCAGTAACAGAGAATAAGA  146
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-TTCCTGATTTTTCTGTTCCCTCTTTAGTCAGTAACAGAGAATAAGA  149

seq1  TACTTAACTTGCTCGGCCCTAAGTTCTGTTTCTTTGTGGAACTTTGTTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAACTTGCTCGGCCCTAAGTTCTGTTTCTTTGTGGAACTTTGTTTT  199

seq1  TGCTTTATTGATTTTGAAGTAATAGGATGAGGTTTATGAACGCTTAGTGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTGATTTTGAAGTAATAGGATGAGGTTTATGAACGCTTAGTGT  249

seq1  TTTGTTTTTCCTCTGTGTTGTGGTGGCCCTTTATTATTACTTTTTTACCG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCCTCTGTGTTGTGGTGGCCCTTTATTATTACTTTTTTACCG  299

seq1  TGCTCATATTCTGTGCTCTGACAGTCTGTGTACCTGATGTTTCTGCTGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATTCTGTGCTCTGACAGTCTGTGTACCTGATGTTTCTGCTGTC  349

seq1  ATTTCATCTCTCTCTGTAGTGGAGCTGGCATGGTCTGTGTGTTTCCCTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCTCTCTCTGTAGTGGAGCTGGCATGGTCTGTGTGTTTCCCTCT  399

seq1  TGATTTGTTTTCAGTCTGATTATATGTGAGGTCTGCTTATGTATGATGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTTTCAGTCTGATTATATGTGAGGTCTGCTTATGTATGATGTG  449

seq1  GAGTGGTCTTGCTTGTTGAGCTAGTTTCCCTCTCTGCTTTGGATTAATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTCTTGCTTGTTGAGCTAGTTTCCCTCTCTGCTTTGGATTAATAG  499

seq1  AAACACTTCATTGTACCGGCTTACTGCTTTAGGCTGTTAGGTCAAGCTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTCATTGTACCGGCTTACTGCTTTAGGCTGTTAGGTCAAGCTCT  549

seq1  ATGGTGTAGGCGTTTAAACTCACCACCCACCTTGAAGTGCTACTTAAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTAGGCGTTTAAACTCACCACCCACCTTGAAGTGCTACTTAAGGG  599

seq1  CTTACCATTCTCCTCACCCCATTATCCACTGTATGGTAAATGGATCCATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATTCTCCTCACCCCATTATCCACTGTATGGTAAATGGATCCATC  649

seq1  TGGTATTGCGTTCTGCCTTAGTAGAACGTTTCTTATGCAGCAGAACTGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGCGTTCTGCCTTAGTAGAACGTTTCTTATGCAGCAGAACTGCT  699

seq1  GGTTATTAGTCTACTTTTGTAGATCTGAAAGAGTCATTCCATCTTCTCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTAGTCTACTTTTGTAGATCTGAAAGAGTCATTCCATCTTCTCTG  749

seq1  CTGACTAGTTTTATATCAACCTGAAACAAACTAGAGTGAGCATAGAAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGTTTTATATCAACCTGAAACAAACTAGAGTGAGCATAGAAGTG  799

seq1  AGAACGTCAACTGAGAAGATGTCTCCTAAGGTTGGGCCGCAGTGAGGCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTCAACTGAGAAGATGTCTCCTAAGGTTGGGCCGCAGTGAGGCCT  849

seq1  GCTAAGTCCTGTTCTTAGTGATTGAGGGGGAGGCCCAGTCCATAGTGGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCCTGTTCTTAGTGATTGAGGGGGAGGCCCAGTCCATAGTGGGT  899

seq1  AGGCCTCCCCTGAGGTGGTCGTCCTGGGTCCTATCACATTGCAGGCTGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCCCTGAGGTGGTCGTCCTGGGTCCTATCACATTGCAGGCTGAA  949

seq1  GGAATTCTAAGGAGCAAGCTAATAAGCAGCACCCTTCATGGGCTCTGCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTAAGGAGCAAGCTAATAAGCAGCACCCTTCATGGGCTCTGCCT  999

seq1  CAGCTCCTGCTTCCAGGTTCTTGGCCTGTTTGAATTC  1033
      |||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGCTTCCAGGTTCTTGGCCTGTTTGAATTC  1036