BAC Information

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BAC

Clone NameB6Ng01-294J12
Chromosome3 (Build37)
Map Location 105,260,956 - 105,381,122
singlet/doubletdoublet
Overlap geneKcnd3
Upstream geneLrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik
Downstream geneDdx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J12.bB6Ng01-294J12.g
ACCGA090682GA090683
length1,1331,140
definitionB6Ng01-294J12.b B6Ng01-294J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,379,986 - 105,381,122)(105,260,956 - 105,262,094)
sequence
gaattcacaaggcttactgtcttaacctggctagcttaaaggacttttaa
atgagtttcctccttcctccccttctctctcctagtaatatgtaaatgct
aatgaggatcgagggaggcagagggtgggaagaaaggcaggggagagaaa
gacaccagaaatggaaagcagtgtgtggtgctggtgaccctggagtgggc
acgcacatgcacttgcagaaattcaaacaagcaaacaagcctcttggtca
gaaaatgtccttagccatggtgctgaacactgcatatccacgcacaggtg
gcagcgggagacttaagtctgtatattctccaaattccctatcagtgtca
cagagaattcccaaagggtgggtttctgtgattgcctttcaggaatctta
tcgcgaatcgcacaagaacttccctattcaacccttcaaagagctcccac
aggctttgccttcagttattcagaccacaccacagaaggtggcaggtgct
tctactttgtgggaaccttaaaaacaggaagagaggggacagcctgtctc
tgattgtagtcagatggtgaccaaagaggtgagggatgttcagtgagcta
gtgggattcagtttttgttttaaatattgctattcttttattatatgtat
attaattatacaaatggatggatttcatgaagacattttaatgcatatat
accttctcatattcttcacccatcctacttttctattgttaatctctctt
tctccaattctctctccttttaaataaaagtcacactatatgtcccaggc
tagcctcaaactcatgatccttgtacaacgtcagcctcttgaacatagaa
attacaggcatgtgctaccacactccaagagatcatgtatgaaatgtgtt
tcataatgctgtaggtatatactgatataggtgatggggttgttagaatt
ttaggtgcaattatatagtctagtgtttagtaaaagaacagaaaatgatg
tatacaaagaagaactcttcacagttgagattccagcaattgcaactcaa
ccccaattatgtgctgtgttaactaactttaggctcattgcattgtttct
tccaaatactgagctgtacctattcgctgtgaa
gaattccttcattttgcttctgaaggctgcaagtagatattgggttgcta
gggcagggaccaggccaagcatcctgaagagtaagaagcaatttgccaga
taaagccttctctatgggagttaggggtagaacttcgctctgagcttctt
taggtcacctgtcttgacagaattttccagaactttccaaatccagcctg
ctcgagtcttcttcccatcagggaggaatagaaaggatgtatttacttga
tatccttcattggcaccccactcctgattaccctggtggatgaagagtga
aataaaaattagcatgtttatcccacttttaaattcgtttaatgagaact
catttaccctctcccaatttaaattcgtaataacgccataacctttcaga
gctcattattacccatcttcccagatcttcctgttagaggagcttgcctt
cccaagtcctcctgggacccccctggagcttgtcactttgtcagtctgca
acatctgaggacccagctctttgctcagccccttgggaggtgctgtcctt
gtatcactattgtggtttcttttggtgattttagtttttaatctggccat
ggggacttactttctcacttagcaatgatcctttccttgttcctttccgt
caaaactcaaagtggactcagcccctttctctgctctctcctaccctcca
gggaatcactgaactaaccaactccaagctggtgtgtacagtgtcagagc
agctaccagcccaaaagctggagtcaccatggcggcaggagttgcagcct
ggctgccttttgcccgggctgcggccattggatggatgccagtggccaac
tgccccatgcccctagctccagcggacaagaacaagcggcaagacgagct
gatcgtcctcaacgtaagtggacgacggttccagacctggaggaccactc
tggagcgctatcccgacaccttgctgggtagcacagagacgagttcttct
tcatgagacacgaaggagtacttctttgaccggtgacccgggagtgttcg
gttgtggtgcttaaccttctaccgcaccggagctgccacctacccacgct
atggatgcattctctgcttacgacgatggaactgccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105379986_105381122
seq2: B6Ng01-294J12.b_50_1182 (reverse)

seq1  TTCACAAGCGAATATGTACAACTAAAGGTATTT-GAGGAAACAATGCAAA  49
      ||||| |||||||| ||||| || |  |||||| || |||||||||| ||
seq2  TTCAC-AGCGAATAGGTACAGCTCA--GTATTTGGAAGAAACAATGC-AA  46

seq1  GGAGCCT-AAGTTAGTTTAACAACAGCAACATAATT-GGGTTGAGTTGCA  97
       |||||| ||||||| ||||| ||||| |||||||| |||||||||||||
seq2  TGAGCCTAAAGTTAG-TTAAC-ACAGC-ACATAATTGGGGTTGAGTTGCA  93

seq1  ATTGCTGGAATCTCAACTGTGAAGAGTTC-TCTTTGTATACATCATTTTC  146
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGCTGGAATCTCAACTGTGAAGAGTTCTTCTTTGTATACATCATTTTC  143

seq1  TGTTCTTTTACTAAACACTAGACTATATAATTGCACCTAAAATTTCTAAC  196
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTCTTTTACTAAACACTAGACTATATAATTGCACCTAAAA-TTCTAAC  192

seq1  -ACCCCATCACCTATTATCAGTATATACCTACAGCATTATGAAACACATT  245
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCCCATCACCTA-TATCAGTATATACCTACAGCATTATGAAACACATT  241

seq1  TCATACATGATCTCTTGGAGTGTGGTAGCACATGCCTGTAATTTCTATGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGATCTCTTGGAGTGTGGTAGCACATGCCTGTAATTTCTATGT  291

seq1  TCAAGAGGCTGACGTTGTACAAGGATCATGAGTTTGAGGCTAGCCTGGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGCTGACGTTGTACAAGGATCATGAGTTTGAGGCTAGCCTGGGA  341

seq1  CATATAGTGTGACTTTTATTTAAAAGGAGAGAGAATTGGAGAAAGAGAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGTGTGACTTTTATTTAAAAGGAGAGAGAATTGGAGAAAGAGAGA  391

seq1  TTAACAATAGAAAAGTAGGATGGGTGAAGAATATGAGAAGGTATATATGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATAGAAAAGTAGGATGGGTGAAGAATATGAGAAGGTATATATGC  441

seq1  ATTAAAATGTCTTCATGAAATCCATCCATTTGTATAATTAATATACATAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGTCTTCATGAAATCCATCCATTTGTATAATTAATATACATAT  491

seq1  AATAAAAGAATAGCAATATTTAAAACAAAAACTGAATCCCACTAGCTCAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGAATAGCAATATTTAAAACAAAAACTGAATCCCACTAGCTCAC  541

seq1  TGAACATCCCTCACCTCTTTGGTCACCATCTGACTACAATCAGAGACAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCCCTCACCTCTTTGGTCACCATCTGACTACAATCAGAGACAGG  591

seq1  CTGTCCCCTCTCTTCCTGTTTTTAAGGTTCCCACAAAGTAGAAGCACCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCTCTCTTCCTGTTTTTAAGGTTCCCACAAAGTAGAAGCACCTG  641

seq1  CCACCTTCTGTGGTGTGGTCTGAATAACTGAAGGCAAAGCCTGTGGGAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCTGTGGTGTGGTCTGAATAACTGAAGGCAAAGCCTGTGGGAGC  691

seq1  TCTTTGAAGGGTTGAATAGGGAAGTTCTTGTGCGATTCGCGATAAGATTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGGGTTGAATAGGGAAGTTCTTGTGCGATTCGCGATAAGATTC  741

seq1  CTGAAAGGCAATCACAGAAACCCACCCTTTGGGAATTCTCTGTGACACTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGCAATCACAGAAACCCACCCTTTGGGAATTCTCTGTGACACTG  791

seq1  ATAGGGAATTTGGAGAATATACAGACTTAAGTCTCCCGCTGCCACCTGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAATTTGGAGAATATACAGACTTAAGTCTCCCGCTGCCACCTGTG  841

seq1  CGTGGATATGCAGTGTTCAGCACCATGGCTAAGGACATTTTCTGACCAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGATATGCAGTGTTCAGCACCATGGCTAAGGACATTTTCTGACCAAG  891

seq1  AGGCTTGTTTGCTTGTTTGAATTTCTGCAAGTGCATGTGCGTGCCCACTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTTTGCTTGTTTGAATTTCTGCAAGTGCATGTGCGTGCCCACTC  941

seq1  CAGGGTCACCAGCACCACACACTGCTTTCCATTTCTGGTGTCTTTCTCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCACCAGCACCACACACTGCTTTCCATTTCTGGTGTCTTTCTCTC  991

seq1  CCCTGCCTTTCTTCCCACCCTCTGCCTCCCTCGATCCTCATTAGCATTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTTTCTTCCCACCCTCTGCCTCCCTCGATCCTCATTAGCATTTA  1041

seq1  CATATTACTAGGAGAGAGAAGGGGAGGAAGGAGGAAACTCATTTAAAAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTACTAGGAGAGAGAAGGGGAGGAAGGAGGAAACTCATTTAAAAGT  1091

seq1  CCTTTAAGCTAGCCAGGTTAAGACAGTAAGCCTTGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGCTAGCCAGGTTAAGACAGTAAGCCTTGTGAATTC  1133

seq1: chr3_105260956_105262094
seq2: B6Ng01-294J12.g_64_1203

seq1  GAATTCCTTCATTTTGCTTCTGAAGGCTGCAAGTAGATATTGGGTTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATTTTGCTTCTGAAGGCTGCAAGTAGATATTGGGTTGCTA  50

seq1  GGGCAGGGACCAGGCCAAGCATCCTGAAGAGTAAGAAGCAATTTGCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGACCAGGCCAAGCATCCTGAAGAGTAAGAAGCAATTTGCCAGA  100

seq1  TAAAGCCTTCTCTATGGGAGTTAGGGGTAGAACTTCGCTCTGAGCTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTTCTCTATGGGAGTTAGGGGTAGAACTTCGCTCTGAGCTTCTT  150

seq1  TAGGTCACCTGTCTTGACAGAATTTTCCAGAACTTTCCAAATCCAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCACCTGTCTTGACAGAATTTTCCAGAACTTTCCAAATCCAGCCTG  200

seq1  CTCGAGTCTTCTTCCCATCAGGGAGGAATAGAAAGGATGTATTTACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTCTTCTTCCCATCAGGGAGGAATAGAAAGGATGTATTTACTTGA  250

seq1  TATCCTTCATTGGCACCCCACTCCTGATTACCCTGGTGGATGAAGAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCATTGGCACCCCACTCCTGATTACCCTGGTGGATGAAGAGTGA  300

seq1  AATAAAAATTAGCATGTTTATCCCACTTTTAAATTCGTTTAATGAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATTAGCATGTTTATCCCACTTTTAAATTCGTTTAATGAGAACT  350

seq1  CATTTACCCTCTCCCAATTTAAATTCGTAATAACGCCATAACCTTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCCTCTCCCAATTTAAATTCGTAATAACGCCATAACCTTTCAGA  400

seq1  GCTCATTATTACCCATCTTCCCAGATCTTCCTGTTAGAGGAGCTTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTATTACCCATCTTCCCAGATCTTCCTGTTAGAGGAGCTTGCCTT  450

seq1  CCCAAGTCCTCCTGGGACCCCCCTGGAGCTTGTCACTTTGTCAGTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCCTCCTGGGACCCCCCTGGAGCTTGTCACTTTGTCAGTCTGCA  500

seq1  ACATCTGAGGACCCAGCTCTTTGCTCAGCCCCTTGGGAGGTGCTGTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAGGACCCAGCTCTTTGCTCAGCCCCTTGGGAGGTGCTGTCCTT  550

seq1  GTATCACTATTGTGGTTTCTTTTGGTGATTTTAGTTTTTAATCTGGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTATTGTGGTTTCTTTTGGTGATTTTAGTTTTTAATCTGGCCAT  600

seq1  GGGGACTTACTTTCTCACTTAGCAATGATCCTTTCCTTGTTCCTTTCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTACTTTCTCACTTAGCAATGATCCTTTCCTTGTTCCTTTCCGT  650

seq1  CAAAACTCAAAGTGGACTCAGCCCCTTTCTCTGCTCTCTCCTACCCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCAAAGTGGACTCAGCCCCTTTCTCTGCTCTCTCCTACCCTCCA  700

seq1  GGGAATCACTGAACTAACCAACTCCAAGCTGGTGTGTACAGTGTCAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCACTGAACTAACCAACTCCAAGCTGGTGTGTACAGTGTCAGAGC  750

seq1  AGCTACCAGCCCAAAAGCTGGAGTCACCATGGCGGCAGGAGTTGCAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCAGCCCAAAAGCTGGAGTCACCATGGCGGCAGGAGTTGCAGCCT  800

seq1  GGCTGCCTTTTGCCCGGGCTGCGGCCATTGGATGGATGCCAGTGGCCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTTTTGCCCGGGCTGCGGCCATTGGATGGATGCCAGTGGCCAAC  850

seq1  TGCCCCATGCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGACGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCATGCCCCTAGCTCCAGCGGACAAGAACAAGCGGCAAGACGAGCT  900

seq1  GATCGTCCTCAACGTAAGTGGACGACGGTTCCAGACCTGGAGGACCACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTCCTCAACGTAAGTGGACGACGGTTCCAGACCTGGAGGACCACTC  950

seq1  TGGAGCGCTATCCCGACACCTTGCTGGGTAGCACAGAGAAGGAGTTCTTC  1000
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  TGGAGCGCTATCCCGACACCTTGCTGGGTAGCACAGAG-ACGAGTTCTTC  999

seq1  TTCAATGAGGACACGAAGGAGTACTTCTTTGACC-GTGACCCGGAAGTGT  1049
      ||| |||| ||||||||||||||||||||||||| ||||||||| |||||
seq2  TTC-ATGA-GACACGAAGGAGTACTTCTTTGACCGGTGACCCGGGAGTGT  1047

seq1  TCCGTTGT-GTGCTTAA-CTTCTACCGCACCGGGAAGCTGC--ACTACCC  1095
      || ||||| |||||||| |||||||||||||||  ||||||   ||||||
seq2  TCGGTTGTGGTGCTTAACCTTCTACCGCACCGG--AGCTGCCACCTACCC  1095

seq1  ACGCTATGAATGCA-TCTCTGCCTACGACGAT-GAACTGGCCTTCT  1139
      |||||||| ||||| ||||||| ||||||||| ||||| |||||||
seq2  ACGCTATGGATGCATTCTCTGCTTACGACGATGGAACT-GCCTTCT  1140