BAC Information

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BAC

Clone NameB6Ng01-294O09
Chromosome3 (Build37)
Map Location 30,710,207 - 30,912,074
singlet/doubletdoublet
Overlap geneTloc1, Gpr160, Phc3, LOC100040809, Prkci
Upstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7
Downstream geneSkil, Cldn11, Slc7a14, LOC625125, Kcnmb2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294O09.bB6Ng01-294O09.g
ACCGA090905GA090906
length1,145638
definitionB6Ng01-294O09.b B6Ng01-294O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,910,906 - 30,912,074)(30,710,207 - 30,710,845)
sequence
gaattcttgatccttctgctgagcctccccaatgaaaggattaccgatag
ggataatcgcactaccacatactgtatgtgtcatatttagaaagcctact
tacgaacttccttaagagactaaatgaaggtggtggtttctcaaccgtcg
ttccggaagtcccaggaactaaagcatttaaggaacgtctgtgtaaacac
ttctctgcttaagaaagcgccatgtctaccatactcctcagctcccagat
cgctattaccatgaccgactcaggcacagggtgcggatgaagacactgca
ctcagaaggtagaaaacagattggactcgggattcttctgtcttcactct
gtcattagcataaattattttattgatggccacagatcaaaagtgtttta
ctgcaaagattccctaaatggtaaatttaggcatactttaacttaattct
taaaggaaaaaaggtgggacatccttaactatgttactgggcttcagact
aactggtcaggcgctcaacaaactattctgtaaaatataaagctaaagct
ttcctgggggctgattttaaaagtaaatgcaagaagcaacgtgctggaaa
gatggctcaacagttaagagcactgactgctcttccacatgtcctgattt
cagtttccagcaaccacatggtggctcacaaccatctgtaatggacatcc
gatgccctcctctctgtatctgaagacagtgacagtgtactcacatacgt
tgagatagatgaaaaaaaaaaaagtccctttgcttaaagcacattgagtt
ctgctatttcaatgtggacttttcttctgacatataattatccagcaaat
gtgtctctgactgcatcagtaataatgtcctcacaggactacccaatatg
gtaaatcattggatcgagcatcatagcagaagagagtcacatatctcaac
tactatcatgtaaatgacatcgatgactccaagtctgcacagacgagggc
tgagagatgactcgatagatgtgccatctcagacttcactaatgcaggtc
atgctacctatttaaactgacagggaaatggacgacacctcggaccaccg
catgaatcgaggttaccagtagtgatccggagagctcgtgtctct

gaattccattacacacttgtgccaagtgttgtacctataagaggcattgt
ctcctagggctgggtgtttgagactctgcagtaggaaggctcagatatct
taagtgttaaatgtatccctgagtactaaatacttcacaggtgctatagg
aaaatacagtgcaattctctgcaaggaagctttttttaaaaaaagattta
ttatatgtaagtacactgtagtctggagaccatgggcatttgacttgagc
cttcagaactgactggcagattgcccattgtaccaggaaagagagataga
tctattagggaagaaagcaagctgaacaagcttgccatcttgaaaaggcc
aggctgtgcatgtgcacgtgcgcgcacacacacacacacacacacacaca
cacacacacaagaaacactgtatctccagacttaaaattggaaatttccc
ttttattaaacataggtttttaagctgaatatggtggtgtacacctttaa
tcctagcacttgagagacagatctctgtgagtttgaggccagcccctggt
ctgtatagtcagtcagttcaaggctagccagggctgttatataaagaaac
tccatctaaaaagggtggggggatgttagagggttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_30910906_30912074
seq2: B6Ng01-294O09.b_42_1186 (reverse)

seq1  AGAGACA-GAG-TCTCCGGATCACTCCTGTGTACCCTGGA-TCCTGCCAG  47
      ||||||| ||| ||||||||||||| ||| ||| ||| || || |||   
seq2  AGAGACACGAGCTCTCCGGATCACTACTG-GTAACCTCGATTCATGCGGT  49

seq1  CGTCCGAAGTTTCTCCCATCTCCCCTCCAGTCTCAATATAGGTTACCACG  97
       |||||| || ||  |||| ||||   |||| | ||||   | || || |
seq2  GGTCCGAGGTGTCGTCCATTTCCCTGTCAGTTTAAATA---GGTAGCATG  96

seq1  ACCTGCTTTAGGTGAAATCTGGAGATTGGAACTTCTATCTGAGCCATCTC  147
      |||||| ||| ||||| ||| |||| ||| || |||||| ||| ||||||
seq2  ACCTGCATTA-GTGAAGTCT-GAGA-TGGCACATCTATC-GAGTCATCTC  142

seq1  CCGAGCCCTCGTCTGTTGCATTACTTCGAAGACATCAATGACATTTTACA  197
       | |||||||||||| ||||  |||| | || |||| ||| || ||||||
seq2  TC-AGCCCTCGTCTG-TGCA-GACTT-GGAGTCATCGATGTCA-TTTACA  187

seq1  TAATTACTAATTTGAGATTATGTGACTCTTTTCTACTTTGAATACTTTGA  247
      | | || | | |||||| ||||||||||| |||| || || || | | ||
seq2  TGA-TAGT-AGTTGAGA-TATGTGACTCTCTTCTGCTATG-ATGC-TCGA  232

seq1  TCCAATGATTTTACCATATTTGGGTAATCCTGTGAGGCCAATTATTACTG  297
      |||||||| ||||||||| ||||||| |||||||||| | ||||||||||
seq2  TCCAATGA-TTTACCATA-TTGGGTAGTCCTGTGAGGAC-ATTATTACTG  279

seq1  ATGAATTCAAATAAAACATTTTCTAAATAATTTATATTTCAGAAGAAAAG  347
      ||| | ||| |  | |||||| ||  |||| |||||| ||||||||||||
seq2  ATGCAGTCAGA-GACACATTTGCTGGATAA-TTATATGTCAGAAGAAAAG  327

seq1  TTTATATTTAAATAGCAGAACTCAATGTTGCTTTTAAGCAAAGGGACTTT  397
      |  | ||| |||||||||||||||||| ||| |||||||||||||||  |
seq2  TCCACATTGAAATAGCAGAACTCAATG-TGC-TTTAAGCAAAGGGAC--T  373

seq1  TTTTTTTTTTTAATTTATTTC-ACGTATGTGAGTACACTTGTCACTGTCT  446
      ||||||||||| || ||| || |||||||||||||||| |||||||||||
seq2  TTTTTTTTTTTCATCTATCTCAACGTATGTGAGTACAC-TGTCACTGTCT  422

seq1  TCAGATACAGAGAGGAGGGCATCGGATGTCCATTACAGATGGTTGTGAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATACAGAGAGGAGGGCATCGGATGTCCATTACAGATGGTTGTGAGC  472

seq1  CACCATGTGGTTGCTGGAAACTGAACTCAGGACCTCTGGAAGAGCAGTCA  546
      ||||||||||||||||||||||||| ||||||| | ||||||||||||||
seq2  CACCATGTGGTTGCTGGAAACTGAAATCAGGACATGTGGAAGAGCAGTCA  522

seq1  GTGCTCTTAACTGTTGAGCCATCTTTCCAGCATGTTGCTTCTTGCATTTA  596
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGCTCTTAACTGTTGAGCCATCTTTCCAGCACGTTGCTTCTTGCATTTA  572

seq1  CTTTTAAAATCAGCCCCCAGGAAAGCTTTAGCTTTATATTTTACAGAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAATCAGCCCCCAGGAAAGCTTTAGCTTTATATTTTACAGAATA  622

seq1  GTTTGTTGAGCGCCTGACCAGTTAGTCTGAAGCCCACTAACATAGTTAAT  696
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  GTTTGTTGAGCGCCTGACCAGTTAGTCTGAAGCCCAGTAACATAGTTAAG  672

seq1  GATGTCCCACCTTTTTTCCTTTAAGAATTAAGTTAAACTATGCCTAAATT  746
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGTCCCACCTTTTTTCCTTTAAGAATTAAGTTAAAGTATGCCTAAATT  722

seq1  TACCATTTAGGGAATCTTTGCAGTAAAACACTTTTGATCTGTGGCCATCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTAGGGAATCTTTGCAGTAAAACACTTTTGATCTGTGGCCATCA  772

seq1  ATAAAATAATTTATGCTAATGACAGAGTGAAGACAGAAGAATCCCGAGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATTTATGCTAATGACAGAGTGAAGACAGAAGAATCCCGAGTC  822

seq1  CAATCTGTTTTCTACCTTCTGAGTGCAGTGTCTTCATCCGCAGCCTGTGC  896
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATCTGTTTTCTACCTTCTGAGTGCAGTGTCTTCATCCGCACCCTGTGC  872

seq1  CTGACTTGGTTATTGTAATAGCGATCTGGGAGCTGAGGAGTATTGTAGAC  946
      |||| | ||| || ||||||||||||||||||||||||||||| ||||||
seq2  CTGAGTCGGTCATGGTAATAGCGATCTGGGAGCTGAGGAGTATGGTAGAC  922

seq1  ATGGTGCTTTCTTAAGCAGAGAAGTGTTTACACAGACGTTCCTTAAATGC  996
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGCTTTCTTAAGCAGAGAAGTGTTTACACAGACGTTCCTTAAATGC  972

seq1  TTTAGTTCCTGGGACTTACGGAACGACGGTTGATAAACCACCACCTTCAT  1046
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  TTTAGTTCCTGGGACTTCCGGAACGACGGTTGAGAAACCACCACCTTCAT  1022

seq1  TTAGTCTCTTAAGGAAGTTCGTACTTAGGCTTTCTAAATATTACACATAC  1096
      |||||||||||||||||||||||  |||||||||||||||| ||||||||
seq2  TTAGTCTCTTAAGGAAGTTCGTAAGTAGGCTTTCTAAATATGACACATAC  1072

seq1  AGTATGTGGTATTGTGATTATCCCTATCTGTAAACCTTTCATTTGGGAGG  1146
      ||||||||||| || ||||||||||||| |||| ||||||||| ||||||
seq2  AGTATGTGGTAGTGCGATTATCCCTATCGGTAATCCTTTCATTGGGGAGG  1122

seq1  CTCAGCAGAAGGATCAAGAATTC  1169
      |||||||||||||||||||||||
seq2  CTCAGCAGAAGGATCAAGAATTC  1145


seq1: chr3_30710207_30710845
seq2: B6Ng01-294O09.g_69_706

seq1  GAATTCCAAGACACACTTATGCCAACTGTTGTACCTATAAGAAGCAGTGT  50
      ||||||||  |||||||| |||||| |||||||||||||||| ||| |||
seq2  GAATTCCATTACACACTTGTGCCAAGTGTTGTACCTATAAGAGGCATTGT  50

seq1  CTCCTAGGGCTGGGTGTTTGAGACTCTGCAGTAGGAAGCACTCAGATATC  100
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  CTCCTAGGGCTGGGTGTTTGAGACTCTGCAGTAGGAAG-GCTCAGATATC  99

seq1  TTAAGTGTTAAGTGTATCCCTGAGTACTAGATACTTCACAGGTGCTATAG  150
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTAAGTGTTAAATGTATCCCTGAGTACTAAATACTTCACAGGTGCTATAG  149

seq1  GAAAATACAGTGCAATTCTCTGCAAGGAAGCTTTTTTTAAAAAAAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACAGTGCAATTCTCTGCAAGGAAGCTTTTTTTAAAAAAAGATTT  199

seq1  ATTATATGTAAGTACACTGTAGTCTGGAGACCATGGGCATTTGACTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGTAAGTACACTGTAGTCTGGAGACCATGGGCATTTGACTTGAG  249

seq1  CCTTCAGAACTGACTGGCAGATTGCCCATTGTACCAGGAAAGAGAGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAACTGACTGGCAGATTGCCCATTGTACCAGGAAAGAGAGATAG  299

seq1  ATCTATTAGGGAAGAAAGCAAGCTGAACAAGCTTGCCATCTTGAAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAGGGAAGAAAGCAAGCTGAACAAGCTTGCCATCTTGAAAAGGC  349

seq1  CAGGCTGTGCATGTGCACGTGCGCGCACACACACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTGCATGTGCACGTGCGCGCACACACACACACACACACACACAC  399

seq1  ACACACACACAAGAAACACTGTATCTCCAGACTTAAAATTGGAAATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAGAAACACTGTATCTCCAGACTTAAAATTGGAAATTTCC  449

seq1  CTTTTATTAAACATAGGTTTTTAAGCTGAATATGGTGGTGTACACCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTAAACATAGGTTTTTAAGCTGAATATGGTGGTGTACACCTTTA  499

seq1  ATCCTAGCACTTGAGAGACAGATCTCTGTGAGTTTGAGGCCAGCCCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGCACTTGAGAGACAGATCTCTGTGAGTTTGAGGCCAGCCCCTGG  549

seq1  TCTGTATAGTCAGTCAGTTCAAGGCTAGCCAGGGCTGTTATATAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGTCAGTCAGTTCAAGGCTAGCCAGGGCTGTTATATAAAGAAA  599

seq1  CTCCATCTAAAAAGGGTGGGGGGATGTTAGAGGGTTGGG  639
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTAAAAAGGGTGGGGGGATGTTAGAGGGTTGGG  638


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