BAC Information

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BAC

Clone NameB6Ng01-295D13
Chromosome3 (Build37)2 (Build37)
Map Location 81,305,303 - 81,306,42734,739,679 - 34,739,833
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295D13.bB6Ng01-295D13.g
ACCGA091144GA091145
length1,116457
definitionB6Ng01-295D13.b B6Ng01-295D13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,305,303 - 81,306,427)(34,739,679 - 34,739,833)
sequence
gaattcaatcctatccaactccccaaaaaataatcttgtaggtttaaaag
ttacccttattaagttcacaaaaaagtaaacagaattaataattgaaaag
tagggaactggcactttgaaagcactaatatcaacgcataaataacttag
tagcatacaatggttgtcctaaatggtggaatgcttaactttgatacagt
ggtttctatagcatgggaattttaacaatctcactccatgttgttctaga
acccttctgcaaccaaaatctataataggcagggttctgtagaagaacag
aactgatacattagtatatacattatattaattatgtaaattaattatat
gaaataactatacaatgtgaatatatatatatatatgtatatatatatct
tattagaggagtggtttacaagctgtggcctagctagtccaacaatagct
ctctaccaataaaaaaatacaagaatccattagttgttcagttcatcagg
ctgcatgtggcagatggtcttcaaaatatgttggaatcctgaagaatgag
cctctaatgcccgtgaaggaatgcaattaccaatgagaacaagcagaaaa
agagcaaaatcttgcttcttctatatcctttaaatataggctgccaccag
aaggtatgacctggatgaagagtggattgttccacctcaaatttcctggt
tgaaggtagactttccttcttcaaatgatgatttaataatgaaaatctcc
cacaggtatacccagaggctaggattttagtagaatcaagttatggtcaa
gttgacaagtaagaacagctatcaccaatgtgttccttttctatctagtt
ttgtgagcctccacctgtgatcacttctaagcgtcattccaaagcccatt
tgccctcctctctctcttcagccatcccagagaactaaatcattccattg
aattattttccacaatagttgaatgtctcgagcacagtatagtatctaaa
aactaattttcttttcttactggacacattatgacctgaaatacacaaat
ccagcagttttatgatgtttataaatcctgtcttgcactatgtcctcata
tctgacttggtttttc
tgcactaaactcatctggtcctgagtttttttgttatgtttttttgtttt
gttttgttttgttttctggttgggagacttttaatgactgtttctatttc
tttaggggttataggactgtttatctgatcctgatttaacttagatacat
ggtatctgtctagaaaattgtccattttatccagatttcccagttttgtt
gagtataggcttttgtataggatctgatgtttttttttttttatttcctc
agtttcttttgttatatatcctttttcatttctgattctgttaatttgga
tactgtctctgtgccttctggttagtttgaataagggtttatctatattt
tttattttctcaaaaagaaagaaagaaagagagagagagagagaaagaga
gagagagaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
aaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81305303_81306427
seq2: B6Ng01-295D13.b_46_1161 (reverse)

seq1  GAAAAACAAAGTCAGGATATGAGACAATAGTGCAAAGGACAAGGGAATTT  50
      ||||||| |||||| ||||||||   |||||||||  ||||  |||  ||
seq2  GAAAAACCAAGTCA-GATATGAGGACATAGTGCAA--GACA--GGA--TT  43

seq1  TATAAAACATCATAAAACTTGCTTGGGATTTGTGTATTTCAGGTCATAAT  100
      ||| |||||||||||||| ||||  |||||||||||||||||||||||||
seq2  TAT-AAACATCATAAAAC-TGCT--GGATTTGTGTATTTCAGGTCATAAT  89

seq1  GTGTCCAGTAAG-AAAGAAATTTAGTTTTTAGATACTATACTGTGCTCGA  149
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  GTGTCCAGTAAGAAAAGAAAATTAGTTTTTAGATACTATACTGTGCTCGA  139

seq1  GACATTCAACTATTGTGGAAAATAATTCAATGGAATGATTTAGTTCTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCAACTATTGTGGAAAATAATTCAATGGAATGATTTAGTTCTCTG  189

seq1  GGATGGCTGAAGAGAGAGAGGAGGGCAAAT-GGCTTTGGAATGACGCTTA  248
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGATGGCTGAAGAGAGAGAGGAGGGCAAATGGGCTTTGGAATGACGCTTA  239

seq1  GAAGTGATCACAGGTGGAGGCTCACAAAACTAGATAGAAAAGGAACACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATCACAGGTGGAGGCTCACAAAACTAGATAGAAAAGGAACACAT  289

seq1  TGGTGATAGCTGTTCTTACTTGTCAACTTGACCATAACTTGATTCTACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATAGCTGTTCTTACTTGTCAACTTGACCATAACTTGATTCTACTA  339

seq1  AAATCCTAGCCTCTGGGTATACCTGTGGGAGATTTTCATTATTAAATCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAGCCTCTGGGTATACCTGTGGGAGATTTTCATTATTAAATCAT  389

seq1  CATTTGAAGAAGGAAAGTCTACCTTCAACCAGGAAATTTGAGGTGGAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAGAAGGAAAGTCTACCTTCAACCAGGAAATTTGAGGTGGAACA  439

seq1  ATCCACTCTTCATCCAGGTCATACCTTCTGGTGGCAGCCTATATTTAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCTTCATCCAGGTCATACCTTCTGGTGGCAGCCTATATTTAAAG  489

seq1  GATATAGAAGAAGCAAGATTTTGCTCTTTTTCTGCTTGTTCTCATTGGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGAAGAAGCAAGATTTTGCTCTTTTTCTGCTTGTTCTCATTGGTA  539

seq1  ATTGCATTCCTTCACGGGCATTAGAGGCTCATTCTTCAGGATTCCAACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTCCTTCACGGGCATTAGAGGCTCATTCTTCAGGATTCCAACAT  589

seq1  ATTTTGAAGACCATCTGCCACATGCAGCCTGATGAACTGAACAACTAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAGACCATCTGCCACATGCAGCCTGATGAACTGAACAACTAATG  639

seq1  GATTCTTGTATTTTTTTATTGGTAGAGAGCTATTGTTGGACTAGCTAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTGTATTTTTTTATTGGTAGAGAGCTATTGTTGGACTAGCTAGGC  689

seq1  CACAGCTTGTAAACCACTCCTCTAATAAGATATATATATACATATATATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTGTAAACCACTCCTCTAATAAGATATATATATACATATATATA  739

seq1  TATATATTCACATTGTATAGTTATTTCATATAATTAATTTACATAATTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCACATTGTATAGTTATTTCATATAATTAATTTACATAATTAA  789

seq1  TATAATGTATATACTAATGTATCAGTTCTGTTCTTCTACAGAACCCTGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTATATACTAATGTATCAGTTCTGTTCTTCTACAGAACCCTGCC  839

seq1  TATTATAGATTTTGGTTGCAGAAGGGTTCTAGAACAACATGGAGTGAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGATTTTGGTTGCAGAAGGGTTCTAGAACAACATGGAGTGAGAT  889

seq1  TGTTAAAATTCCCATGCTATAGAAACCACTGTATCAAAGTTAAGCATTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAATTCCCATGCTATAGAAACCACTGTATCAAAGTTAAGCATTCC  939

seq1  ACCATTTAGGACAACCATTGTATGCTACTAAGTTATTTATGCGTTGATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAGGACAACCATTGTATGCTACTAAGTTATTTATGCGTTGATAT  989

seq1  TAGTGCTTTCAAAGTGCCAGTTCCCTACTTTTCAATTATTAATTCTGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTTCAAAGTGCCAGTTCCCTACTTTTCAATTATTAATTCTGTTT  1039

seq1  ACTTTTTTGTGAACTTAATAAGGGTAACTTTTAAACCTACAAGATTATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTGTGAACTTAATAAGGGTAACTTTTAAACCTACAAGATTATTT  1089

seq1  TTTGGGGAGTTGGATAGGATTGAATTC  1125
      |||||||||||||||||||||||||||
seq2  TTTGGGGAGTTGGATAGGATTGAATTC  1116

seq1: chr2_34739679_34739833
seq2: B6Ng01-295D13.g_439_532 (reverse)

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCT  50
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  50

seq1  CTCTCTCCCTCTTCCTCTCTCTCTCTTCCCCCTCTCCCTGCAGCTGCAGT  100
      ||||||| ||||| ||||||||||||     ||||  ||          |
seq2  CTCTCTCTCTCTTTCTCTCTCTCTCT-----CTCTTTCT----------T  85

seq1  TTTTTCTTTCTTCCTTCTTTCCGTTCTCTCTCTCTCTCTCTCTTTCTTTT  150
      | |||||||                                         
seq2  TCTTTCTTT-----------------------------------------  94

seq1  TCTTT  155
           
seq2  -----  94