BAC Information

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BAC

Clone NameB6Ng01-295F08
Chromosome10 (Build37)3 (Build37)
Map Location 38,147,061 - 38,147,573112,976,502 - 112,977,025
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295F08.bB6Ng01-295F08.g
ACCGA091226GA091227
length541518
definitionB6Ng01-295F08.b B6Ng01-295F08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,147,061 - 38,147,573)(112,976,502 - 112,977,025)
sequence
attgcttttaatagctgagtaacactccattgtataaatgtaccacattt
tctgtatctgttgagggacatcacggttgtttccagcttctagctattat
aaataaggctgctatgaacatagtggagcatgtgtccttgatgcatccta
taaatagtgaccaaatgcagacagtattatggatgccaagaactgcatgc
ctcagaagcctgatataactgtctcctgggcggctctgccagagctttac
caatacaaacatagatgctcacaggcaaccattgaactgatcacagggtc
cccaagggagaatttaagagaaaggactgggagctgaaagggtttgcaac
cccataagaagaacaacaatatcaaccaaccaaagcttccagggtctaaa
ccaccaaccaaggagtacacgtggagggacccatggctccagctgtacat
gtagcagaggatggccttgtcaggcatcagtgggagaataggctcttggt
cctgtgaaggttcaatgccccaatgtaggggaatttaaggg

tttatcttgcatttgttatgataaaaaaggacctaagtgcccctctattt
atgtgactaatgctacattatgtttacatttgcatgtgctctctgtacct
caaagaccacttcatgtgtatgtgtgtgagtattgatgtaatttaagtac
aagttcatatatacattaattagaaattctactctgaacaacatatctat
tcctattttaatttgaaatctcatatttaattaccacaattctatagatt
aaagggaaataatacttatgcagcaatacaggaaagtgtatagtagaacc
tttatattaggaataacttcctcaagtaatattcttctggaaaagctact
ccaggaaaaaacaatagatttattcttctgtagttctgttttattattaa
tgtcaaagaccttggacattaatgtttaggttttccttagaagacaaaaa
agtcttgggaatataaaaactagaattgatgaagctaggagggaaataat
ggggaatagtggaggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_38147061_38147573
seq2: B6Ng01-295F08.b_78_593 (reverse)

seq1  CCCTTAAATTCCCCTATTTGAGTTGTATGCTCATTCAAATCCTTGACTCT  50
      ||||||||||||||||      |||   |  |||| ||  ||||  | | 
seq2  CCCTTAAATTCCCCTA----CATTG---GGGCATTGAA--CCTT--CACA  39

seq1  GTGATAGGTACCTATTTATATTGGGATG--TAACAA--CCATTAGCT--T  94
      |    | |  ||||||        ||||  | ||||  ||||   ||  |
seq2  GGACCAAGAGCCTATTCTCCCACTGATGCCTGACAAGGCCATCCTCTGCT  89

seq1  AAAGGCACCCAGTCAGGAATTGTAAT--CTACTTCAGGAATTAATAATAC  142
      | | | |  ||| | |||   |  ||   | | ||              |
seq2  ACATGTA--CAG-CTGGA---GCCATGGGTCCCTC--------------C  119

seq1  AAGAGCCAATAGTAATTAGCAGAAACAGAAGTGCCAAATGCCCTGCAA--  190
      | | |    || |  || |  |        |||    |  ||||| ||  
seq2  ACGTG----TACTCCTTGGTTG--------GTGGTTTAGACCCTGGAAGC  157

seq1  ------TGGCTGACATCAAAGTAAGTATCTAAGAGGAACCTGGCAATAAG  234
            ||| ||| ||    ||   | | || | ||    | ||||    
seq2  TTTGGTTGGTTGATATTGTTGTTCTTCT-TATGGGG----TTGCAAACCC  202

seq1  AATGGGC-ATCAGTCATTGAT-TTCATTTCT--------GCCCC--TGCC  272
        |  ||   ||||| ||  | || | ||||        | |||  ||  
seq2  TTTCAGCTCCCAGTCCTTTCTCTTAAATTCTCCCTTGGGGACCCTGTGAT  252

seq1  CATTGCAATGTTT--CTTTGAGTACATCCA-GATTATCTT--TAA---TC  314
      || | ||||| ||  || ||||  |||| | | || | ||  |||   ||
seq2  CAGTTCAATGGTTGCCTGTGAG--CATCTATGTTTGTATTGGTAAAGCTC  300

seq1  T--CAGTGGTGTGTATAGAAACAAATTTCTC-----TTTGAGGAATGCAA  357
      |  ||| |  |   |  || |||  | | ||     | ||||| ||||| 
seq2  TGGCAGAGCCGCCCA-GGAGACAGTTATATCAGGCTTCTGAGGCATGCAG  349

seq1  TAACCTCTAGG-ATCTAGGAGGCAAGGTATGTAT---GCTGCCAAAGATG  403
      |    ||| || ||| |  |   |  || || ||   |   | |   || 
seq2  T----TCTTGGCATCCATAA--TACTGTCTGCATTTGGTCACTATTTATA  393

seq1  GGAT-CAGAAAGG--------TAAACCAAG-TCCCAGAAG----AATCCA  439
      |||| ||  ||||        |  || | | ||  || ||    | |   
seq2  GGATGCATCAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT  443

seq1  AATA--TTGCCACTG-----AACCCATATGCCCCTCAACAGAGGAATGGA  482
      ||||  | |   |||     ||||   ||| |||||||||        ||
seq2  AATAGCTAGAAGCTGGAAACAACCGTGATGTCCCTCAACA--------GA  485

seq1  TACGGAAAATGTGGTACATTTACACAATGGA  513
      ||| |||||||||||||||||| ||||||||
seq2  TACAGAAAATGTGGTACATTTATACAATGGA  516


seq1: chr3_112976502_112977025
seq2: B6Ng01-295F08.g_67_590 (reverse)

seq1  AATCCTCCACTATTCCCCATTATTTCCCTCCTAGCTTCATCAATTCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCACTATTCCCCATTATTTCCCTCCTAGCTTCATCAATTCTAGT  50

seq1  TTTTATATTCCCAAGACTTTTTTGTCTTCTAAGGAAAACCTAAACATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTCCCAAGACTTTTTTGTCTTCTAAGGAAAACCTAAACATTAA  100

seq1  TGTCCAAGGTCTTTGACATTAATAATAAAACAGAACTACAGAAGAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGGTCTTTGACATTAATAATAAAACAGAACTACAGAAGAATAAA  150

seq1  TCTATTGTTTTTTCCTGGAGTAGCTTTTCCAGAAGAATATTACTTGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTTTTTCCTGGAGTAGCTTTTCCAGAAGAATATTACTTGAGGA  200

seq1  AGTTATTCCTAATATAAAGGTTCTACTATACACTTTCCTGTATTGCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCCTAATATAAAGGTTCTACTATACACTTTCCTGTATTGCTGCA  250

seq1  TAAGTATTATTTCCCTTTAATCTATAGAATTGTGGTAATTAAATATGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTATTTCCCTTTAATCTATAGAATTGTGGTAATTAAATATGAGA  300

seq1  TTTCAAATTAAAATAGGAATAGATATGTTGTTCAGAGTAGAATTTCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTAAAATAGGAATAGATATGTTGTTCAGAGTAGAATTTCTAAT  350

seq1  TAATGTATATATGAACTTGTACTTAAATTACATCAATACTCACACACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATATATGAACTTGTACTTAAATTACATCAATACTCACACACATA  400

seq1  CACATGAAGTGGTCTTTGAGGTACAGAGAGCACATGCAAATGTAAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGTGGTCTTTGAGGTACAGAGAGCACATGCAAATGTAAACATA  450

seq1  ATGTAGCATTAGTCACATAAATAGAGGGGCACTTAGGTCCTTTTTTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCATTAGTCACATAAATAGAGGGGCACTTAGGTCCTTTTTTATCA  500

seq1  TAACAAATGCAAGATAAAGAATTC  524
      ||||||||||||||||||||||||
seq2  TAACAAATGCAAGATAAAGAATTC  524


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