BAC Information

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BAC

Clone NameB6Ng01-295M13
Chromosome3 (Build37)
Map Location 65,746,378 - 65,907,944
singlet/doubletdoublet
Overlap geneCcnl1, LOC625048, Veph1
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneTpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295M13.bB6Ng01-295M13.g
ACCGA091564GA091565
length1,079136
definitionB6Ng01-295M13.b B6Ng01-295M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,906,867 - 65,907,944)(65,746,378 - 65,746,513)
sequence
gaattcattattttcagtatatttttatgtttatattcaatataacttag
tgtttctattgaacatcaatcaaaaaagtaggggacctgtcttaaaaaga
gagataaaaacaaaacaaaaacaaaaacaaaaacaaaaacaaaaacaaaa
acaaacaaacaaaaataaaacttacatgctaaacggccgtccatggaaac
acttgatgcctcatatggacagaatctgctgactcctgtcaagacagtgg
cccttgtagtgaaccccagtgtctcacatagccttcttctccctagaact
gagaacagcattaggtcagcacacaaactagatttgatattcctgagtac
ttcccatgcctccggtgctacttcagatgccgggttgaagaggtcctgtt
gcaatccccagcactacataaaccagcaagcatggtattacttacctgaa
accccatcactctggagatagcaacaggaggatcttaaattcaaggtcat
ccttggctatataaggaggtcaagaccagctcaagatacaggaaacaaaa
caaaacaaaacaaacaaaaatcagctaaagagcaataccagctcctggag
cttctgcagatcctgaaaacggtgcatacactggggtgaacgtgtgccat
ggtatctctgcatctcttccaggtatggtggtttgaatgagcatggcccc
atagggttatgtgtttgaatacttggtccctggtcggtggaactgtttga
gaaggactagagggtgtggccttgttggaggagatttgtcactggggggt
ggacgtggtggtttcaaaagcccaggctatttccagttagctctttgcct
cctactgagatctcagctgctgttccagctccctgcctagcgactgccat
actccctatcatgatggttatggactgtaagcctctgcaaccacgagccc
caaatttaaatgttttctttataagttgccttggtttgggtatcttatca
cagtgatagaaagcaaccaagagactagtttgatctgatacttttgggcc
accagatcttccaaaacacaaacatggag
cacggtggctgtacaggaagtctacaaagctagttccaagacagtcatgg
ctacacaagaaaaccatgtcttaagaaagaaagagaaaagaaaaggaaag
aaagaaaagggaagggggaagggggaagggggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65906867_65907944
seq2: B6Ng01-295M13.b_47_1125 (reverse)

seq1  CTCCATGTTGGTGTTTTGGAAGATCTTGTGGCCAAAAAGTATCAGATC-A  49
      ||||||||| |||||||||||||||| |||||| |||||||||||||| |
seq2  CTCCATGTTTGTGTTTTGGAAGATCTGGTGGCCCAAAAGTATCAGATCAA  50

seq1  ACTAGTCTCTTGGTTGCTTTCTATCACTGTGATAAGATACCCAAACCAAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCTCTTGGTTGCTTTCTATCACTGTGATAAGATACCCAAACCAAG  100

seq1  GCAACTTATAAAAGAAAACATTT-AATTTGGGGCTCGTGGTTGCAGAGGC  148
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  GCAACTTAT-AAAGAAAACATTTAAATTTGGGGCTCGTGGTTGCAGAGGC  149

seq1  TTACAGTCCATAACCATCATGATAGGGAGTATGGCAGTCGCTAGGCAGGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCCATAACCATCATGATAGGGAGTATGGCAGTCGCTAGGCAGGG  199

seq1  AGCTGGAACAGCAGCTGAGATCTCAGTAGGAGGCAAAGAGCTAACTGGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAACAGCAGCTGAGATCTCAGTAGGAGGCAAAGAGCTAACTGGAA  249

seq1  ATAGCCTGGGCTTTTGAAACCACCACGTCCACCCCCCAGTGACAAATCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGGGCTTTTGAAACCACCACGTCCACCCCCCAGTGACAAATCTC  299

seq1  CTCCAACAAGGCCACACCCTCTAGTCCTTCTCAAACAGTTCCACCGACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAAGGCCACACCCTCTAGTCCTTCTCAAACAGTTCCACCGACCA  349

seq1  GGGACCAAGTATTCAAACACATAACCCTATGGGGCCATGCTCATTCAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAAGTATTCAAACACATAACCCTATGGGGCCATGCTCATTCAAAC  399

seq1  CACCATACCTGGAAGAGATGCAGAGATACCATGGCACACGTTCACCCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATACCTGGAAGAGATGCAGAGATACCATGGCACACGTTCACCCCAG  449

seq1  TGTATGCACCGTTTTCAGGATCTGCAGAAGCTCCAGGAGCTGGTATTGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACCGTTTTCAGGATCTGCAGAAGCTCCAGGAGCTGGTATTGCT  499

seq1  CTTTAGCTGATTTTTGTTTGTTTTGTTTTGTTTTGTTTCCTGTATCTTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTGATTTTTGTTTGTTTTGTTTTGTTTTGTTTCCTGTATCTTGA  549

seq1  GCTGGTCTTGACCTCCTTATATAGCCAAGGATGACCTTGAATTTAAGATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTTGACCTCCTTATATAGCCAAGGATGACCTTGAATTTAAGATC  599

seq1  CTCCTGTTGCTATCTCCAGAGTGATGGGGTTTCAGGTAAGTAATACCATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTGCTATCTCCAGAGTGATGGGGTTTCAGGTAAGTAATACCATG  649

seq1  CTTGCTGGTTTATGTAGTGCTGGGGATTGCAACAGGACCTCTTCAACCCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGTTTATGTAGTGCTGGGGATTGCAACAGGACCTCTTCAACCCG  699

seq1  GCATCTGAAGTAGCACCGGAGGCATGGGAAGTACTCAGGAATATCAAATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAAGTAGCACCGGAGGCATGGGAAGTACTCAGGAATATCAAATC  749

seq1  TAGTTTGTGTGCTGACCTAATGCTGTTCTCAGTTCTAGGGAGAAGAAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTGTGCTGACCTAATGCTGTTCTCAGTTCTAGGGAGAAGAAGGC  799

seq1  TATGTGAGACACTGGGGTTCACTACAAGGGCCACTGTCTTGACAGGAGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGACACTGGGGTTCACTACAAGGGCCACTGTCTTGACAGGAGTC  849

seq1  AGCAGATTCTGTCCATATGAGGCATCAAGTGTTTCCATGGACGGCCGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTCTGTCCATATGAGGCATCAAGTGTTTCCATGGACGGCCGTTT  899

seq1  AGCATGTAAGTTTTATTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTAAGTTTTATTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGTTT  949

seq1  TTGTTTTTGTTTTTGTTTTGTTTTTATCTCTCTTTTTAAGACAGGTCCCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTGTTTTGTTTTTATCTCTCTTTTTAAGACAGGTCCCC  999

seq1  TACTTTTTTGATTGATGTTCAATAGAAACACTAAGTTATATTGAATATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTGATTGATGTTCAATAGAAACACTAAGTTATATTGAATATAA  1049

seq1  ACATAAAAATATACTGAAAATAATGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  ACATAAAAATATACTGAAAATAATGAATTC  1079

seq1: chr3_65746378_65746513
seq2: B6Ng01-295M13.g_70_205

seq1  CACGGTGGCTGTACAGGAAGTCTACAAAGCTAGTTCCAAGACAGTCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGGCTGTACAGGAAGTCTACAAAGCTAGTTCCAAGACAGTCATGG  50

seq1  CTACACAAGAAAACCATGTCTTAAGAAAGAAAGAGAAAAGAAAAGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAAGAAAACCATGTCTTAAGAAAGAAAGAGAAAAGAAAAGGAAAG  100

seq1  AAAGAAAAGGGAAGGGGGAAGGGGGAAGGGGGAAGG  136
      ||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGGGAAGGGGGAAGGGGGAAGGGGGAAGG  136