BAC Information

Click to search

BAC

Clone NameB6Ng01-296B16
Chromosome3 (Build37)
Map Location 155,068,594 - 155,069,763
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
Downstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296B16.bB6Ng01-296B16.g
ACCGA091798GA091799
length1,1591,169
definitionB6Ng01-296B16.b B6Ng01-296B16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaactgaggaatactgaatggctgagaagcacctgaaaaaaat
gttcagcatccttattcatcagggaaatgcaaatcaaaacaaccctgaga
ttctacctcacaccagtcagaatggctaagatcaaacactcatacctttt
taaatgtggagtaagcttgaaagttggctaaatattattattgagttttg
cacatcttttctcacacgccccccccccctttttcccgataccacttgct
cccagatcctgtgtcattcagatggtgcatgctggatgtgctcactctcg
tgtagccttgcttctaacaacgttcttttcttttgttacctttttcatct
tcattttcaaaacttttaagatcataccttgttttatccaaactcccttt
ttcttatagacatctgagattttaaacatcccttatagcaatatattatc
tctgattttagtgttttaatactagactttaagtatccatcattatttct
tatatgtataaaattatgaatattcattttataaatgtctcaattttttt
gtaatactcttatattgtattatatcaccttcctttcatccctgcggcca
ttcccattcatcctccattgaacctctactgtgctcccctaaagactata
tcctctttttctttgattatatgctgttaaacacacacacacatgctcat
atatgaacaaatatatatgaatagaacattctgagtccgtatttgttgtt
tgagtgtgtgtagttccaagtctgaccactcggcatctgaggaaacattt
cttttagttttacttcataccatttctgaaaactaattatacaagttgac
tggtgacacagatatccaatcatggctatgagccaggccgctcaggaggt
tgaggcagcaggatcatctaggtctgaaagatgagggccaaacactcaga
aactgcctaaaagtttgctttctttgaagccatagcatgttaacactttt
tttatttatcagacggggagtttcaaaattaaagacataaaaatgaatat
gcatatttgtgaataagtgaaactgaaaataggattttttttttttcctg
acagatgaaataaattgaatagtttgaaggcggatacagctggtgagtta
ctgagtggg

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagagaaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgccccaatgggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaatccagat
gcccctcaacagaggaatggatacagaaaatgtggcacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggtatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacattttcctaaacacatgaaactcaag
aaaaatgaacactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatcgaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaagtacccaaggagctaagggatctgcaaccctata
ggtggaacacatatgaactaccagtacccgagctctgactctagctgcat
atgttatcaaaagattgactagtcgcatcactggaagagagccatagact
gcaactttaatgccagtacaggcacgccagtcaaaatgggggaatgggcg
tggcttaagcggagacaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155068594_155069763
seq2: B6Ng01-296B16.b_46_1204

seq1  GAATTCTCAACTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAAAT  50

seq1  GTTCAGCATCCTTATTCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCATCCTTATTCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  100

seq1  TTCTACCTCACACCAGTCAGAATGGCTAAGATCAAACACTCATACCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCACACCAGTCAGAATGGCTAAGATCAAACACTCATACCTTTT  150

seq1  TAAATGTGGAGTAAGCTTGAAAGTTGGCTAAATATTATTATTGAGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGGAGTAAGCTTGAAAGTTGGCTAAATATTATTATTGAGTTTTG  200

seq1  CACATCTTTTCTCACACGCCCCCCCCCCCTTTTTCCCGATACCACTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTTTCTCACACGCCCCCCCCCCCTTTTTCCCGATACCACTTGCT  250

seq1  CCCAGATCCTGTGTCATTCAGATGGTGCATGCTGGATGTGCTCACTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCCTGTGTCATTCAGATGGTGCATGCTGGATGTGCTCACTCTCG  300

seq1  TGTAGCCTTGCTTCTAACAACGTTCTTTTCTTTTGTTACCTTTTTCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTGCTTCTAACAACGTTCTTTTCTTTTGTTACCTTTTTCATCT  350

seq1  TCATTTTCAAAACTTTTAAGATCATACCTTGTTTTATCCAAACTCCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAAAACTTTTAAGATCATACCTTGTTTTATCCAAACTCCCTTT  400

seq1  TTCTTATAGACATCTGAGATTTTAAACATCCCTTATAGCAATATATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAGACATCTGAGATTTTAAACATCCCTTATAGCAATATATTATC  450

seq1  TCTGATTTTAGTGTTTTAATACTAGACTTTAAGTATCCATCATTATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTTAGTGTTTTAATACTAGACTTTAAGTATCCATCATTATTTCT  500

seq1  TATATGTATAAAATTATGAATATTCATTTTATAAATGTCTCAATTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATAAAATTATGAATATTCATTTTATAAATGTCTCAATTTTTTT  550

seq1  GTAATACTCTTATATTGTATTATATCACCTTCCTTTCATCCCTGCGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACTCTTATATTGTATTATATCACCTTCCTTTCATCCCTGCGGCCA  600

seq1  TTCCCATTCATCCTCCATTGAACCTCTACTGTGCTCCCCTAAAGACTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTCATCCTCCATTGAACCTCTACTGTGCTCCCCTAAAGACTATA  650

seq1  TCCTCTTTTTCTTTGATTATATGCTGTTAAACACACACACACATGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTTCTTTGATTATATGCTGTTAAACACACACACACATGCTCAT  700

seq1  ATATGAACAAATATATATGAATAGAACATTCTGAGTCCGTATTTGTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACAAATATATATGAATAGAACATTCTGAGTCCGTATTTGTTGTT  750

seq1  TGAGTGTGTGTAGTTCCAAGTCTGACCACTCGGCATCTGAGGAAACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTGTAGTTCCAAGTCTGACCACTCGGCATCTGAGGAAACATTT  800

seq1  CTTTTAGTTTTACTTCATACCATTTCTGAAAACTAATTATACAAGTTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTTTTACTTCATACCATTTCTGAAAACTAATTATACAAGTTGAC  850

seq1  TGGTGACACAGATATCCAATCATGGCTATGAGCCAGGCCGCTCAGGAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACACAGATATCCAATCATGGCTATGAGCCAGGCCGCTCAGGAGGT  900

seq1  TGAGGCAGCAGGATCATCTAGGTCTGAAAGATGAGGGCCAAACACTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGCAGGATCATCTAGGTCTGAAAGATGAGGGCCAAACACTCAGA  950

seq1  AACTGCCTAAAAGTTTGCTTTCTTTGAAGCCATAGCATGTTTAACACTTT  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACTGCCTAAAAGTTTGCTTTCTTTGAAGCCATAGCATG-TTAACACTTT  999

seq1  TTTTAATTTATCAGAAGGTGAGTTTCAAAATTAAAAGACAATTAAAAATG  1050
      |||| |||||||||| || ||||||||||||| |||||||  ||||||||
seq2  TTTT-ATTTATCAGACGGGGAGTTTCAAAATT-AAAGACA--TAAAAATG  1045

seq1  AAATATGCATATTTGTG-ATAAGTTGAAACTGAAAATTAGGGATTTTTTT  1099
       |||||||||||||||| ||||| |||||||||||||  |   |||||||
seq2  -AATATGCATATTTGTGAATAAG-TGAAACTGAAAATAGGATTTTTTTTT  1093

seq1  TTTCTTGAACAGGATGAAATAAATTTGATAAGTTTTGAAAGCAGAATACA  1149
      |||| || ||| |||||||||||||  |||   |||||| || | |||||
seq2  TTTCCTG-ACA-GATGAAATAAATTGAATA--GTTTGAAGGC-GGATACA  1138

seq1  GTCTGTGAGTAACTGAGTGGG  1170
      |   |||||| ||||||||||
seq2  GCTGGTGAGTTACTGAGTGGG  1159


| Home | SequenceCutter | Blast | Download |