BAC Information

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BAC

Clone NameB6Ng01-296C05
Chromosome3 (Build37)
Map Location 76,286,968 - 76,379,109
singlet/doubletdoublet
Overlap geneFstl5
Upstream genePdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296C05.bB6Ng01-296C05.g
ACCGA091824GA091825
length1,1871,199
definitionB6Ng01-296C05.b B6Ng01-296C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,286,968 - 76,288,159)(76,377,901 - 76,379,109)
sequence
gaattcattcccagcctgtaatgacactaaggacaagtgtgatggagggt
atatatatatttctgtacctttggtatttctaacatattaattatttttt
ccctttcccaatatattaattcttaagaaagaaaggctttaaatgatagt
gtgtcgtgcacttgtcaatacatctcagatacttagggtatgcattctac
aaagaaagtgtgtttgtatgtttctgatgaaatgaacttgcaatagggga
tgattgtatggaaatgagatgcagccttatttcaaattattgatctttat
cctttttgaatgtttattttattttatttatttttgcttttgataatttc
atacgtattaaggcatcttaatcttatgcacccctcaattcttctctaca
aacactagcaacccccacaactgctattcagcttcatgtccttgtttatt
gttctacacacacacacacacacacacacacacacacacacacacatcct
gaagaatttagtgctgcctataggcacatgagtcttcagctaaccatcag
aaaacagcagtctattaggtgccatatccctaacaccccacagactcttt
ttcccttcagccattattgaaagcctgtagcttctcaatgatctctggat
tattctgagtccttgccctgtccatatgtttgggtcattttcaggtcttg
atcaggtagccacagccattgaaagtccataggtataccattttgtcatt
tgtagatgtgattatttccaagcagttttccatgtccctggcttttgtgg
acatcctcttctaaaattattacttaaaccgtagggtgaatgagtgcaat
atatattcccaactctctagtcagcttattttctgcagtttgacctgtca
ttggtctacatttcttaaaccagtgttgcaaaaaaaggagcttcaataac
caaaattgagaggaaaactctgctatgggtatgaggatatgtaattagaa
gtagctggatattattgttttattttttcaatagagtaggattcttccta
ggttcttgtgacctctcgaactaacttctctttttcaccatgtgtgaact
aaagcacagcaaagaactacatgctcatttaaggtgggcctatggagcgt
gtgtgttattacatgtctaatcccaacttgggaggta

gaattcttgatgaacattcctgctatcagcttaaagctacacattaatgt
acaaaaaattcatgaacactgagatctacctatatacatgtgaatacaca
tgtgtaatacatatacacacatacatagaaaagtactgaaaatcatagag
aacgatataaagttgtgtacatatacaaacttatttactagattacgttg
ttaaagttgttcacaaaacataactgaatttttataaaatgtaagagccc
acaaatgatatgaatgcatgaattttagtcatgcaaaatttttaaccaca
tataggatttgcacctttttaaaagatttttcaaagaaaaataaataaat
tgagcaaacttacattactagccatcttctatttctctcttttctatatt
aacatgttgtcatatttagagttttactgctataaacagacaccatgacc
actcttataaagacaacatttaattgtgactggcttataggttaagatgt
tcaatctattatcattacagtagaatcatggcagcaccagggtgggcatg
gtgcaggaagagttgagagttctacattttcatctgaagactactagaag
actggcttccaagcagctatgatgagggtcttaaagcccacacccacaat
gacacacttcctctaaaaaggccatacttcctaacagtgccactacctaa
gccaagcaagatcaaaccactacacacattgaagtattctgagcttgcaa
tggccaaacacaacaaaaaaaatatagtgtttctaaatgaaatgtttatc
atctagtgctgattataaaatatggctctttctatggttctactgagcct
caattagtctatattaaaactctaagataaacttttagttgtactacatt
tggcagactaacaatattaaaaacatattaaattttttcttttaaagtat
cattgtctgctaattgaatacatctatagaattttgcaatgaactgcagt
ggaatttatcaggaattgatattattccactatttagttaaataaatatt
atataataaatggagaaaggtaatcaaatgagtacagttcgcataataca
aaatgtatgaaaaaatactgcatcgggaataaccgaattgtctagagtta
gggtgagaacattttatggattctttacacataaacctttaaggtatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76286968_76288159
seq2: B6Ng01-296C05.b_47_1233

seq1  GAATTCATTCCCAGCCTGTAATGACACTAAGGACAAGTGTGATGGAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCAGCCTGTAATGACACTAAGGACAAGTGTGATGGAGGGT  50

seq1  ATATATATATTTCTGTACCTTTGGTATTTCTAACATATTAATTATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATTTCTGTACCTTTGGTATTTCTAACATATTAATTATTTTTT  100

seq1  CCCTTTCCCAATATATTAATTCTTAAGAAAGAAAGGCTTTAAATGATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCAATATATTAATTCTTAAGAAAGAAAGGCTTTAAATGATAGT  150

seq1  GTGTCGTGCACTTGTCAATACATCTCAGATACTTAGGGTATGCATTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGTGCACTTGTCAATACATCTCAGATACTTAGGGTATGCATTCTAC  200

seq1  AAAGAAAGTGTGTTTGTATGTTTCTGATGAAATGAACTTGCAATAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTGTGTTTGTATGTTTCTGATGAAATGAACTTGCAATAGGGGA  250

seq1  TGATTGTATGGAAATGAGATGCAGCCTTATTTCAAATTATTGATCTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTATGGAAATGAGATGCAGCCTTATTTCAAATTATTGATCTTTAT  300

seq1  CCTTTTTGAATGTTTATTTTATTTTATTTATTTTTGCTTTTGATAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGAATGTTTATTTTATTTTATTTATTTTTGCTTTTGATAATTTC  350

seq1  ATACGTATTAAGGCATCTTAATCTTATGCACCCCTCAATTCTTCTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTATTAAGGCATCTTAATCTTATGCACCCCTCAATTCTTCTCTACA  400

seq1  AACACTAGCAACCCCCACAACTGCTATTCAGCTTCATGTCCTTGTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAGCAACCCCCACAACTGCTATTCAGCTTCATGTCCTTGTTTATT  450

seq1  GTTCTACACACACACACACACACACACACACACACACACACACACATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACACACACACACACACACACACACACACACACACACACACATCCT  500

seq1  GAAGAATTTAGTGCTGCCTATAGGCACATGAGTCTTCAGCTAACCATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTTAGTGCTGCCTATAGGCACATGAGTCTTCAGCTAACCATCAG  550

seq1  AAAACAGCAGTCTATTAGGTGCCATATCCCTAACACCCCACAGACTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCAGTCTATTAGGTGCCATATCCCTAACACCCCACAGACTCTTT  600

seq1  TTCCCTTCAGCCATTATTGAAAGCCTGTAGCTTCTCAATGATCTCTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCAGCCATTATTGAAAGCCTGTAGCTTCTCAATGATCTCTGGAT  650

seq1  TATTCTGAGTCCTTGCCCTGTCCATATGTTTGGGTCATTTTCAGGTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAGTCCTTGCCCTGTCCATATGTTTGGGTCATTTTCAGGTCTTG  700

seq1  ATCAGGTAGCCACAGCCATTGAAAGTCCATAGGTATACCATTTTGTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTAGCCACAGCCATTGAAAGTCCATAGGTATACCATTTTGTCATT  750

seq1  TGTAGATGTGATTATTTCCAAGCAGTTTTCCATGTCCCTGGCTTTTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGTGATTATTTCCAAGCAGTTTTCCATGTCCCTGGCTTTTGTGG  800

seq1  ACATCCTCTTCTAAAATTATTACTTAAACCGTAGGGTGAATGAGTGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCTTCTAAAATTATTACTTAAACCGTAGGGTGAATGAGTGCAAT  850

seq1  ATATATTCCCAACTCTCTAGTCAGCTTATTTTCTGCAGTTTGACCTGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCCCAACTCTCTAGTCAGCTTATTTTCTGCAGTTTGACCTGTCA  900

seq1  TTGGTCTACATTTCTTAAACCAGTGTTGCAAAAAAAGGAGCTTCAATAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTACATTTCTTAAACCAGTGTTGCAAAAAAAGGAGCTTCAATAAC  950

seq1  CAAAATTGAGAGGAAAACTCTGCTATGGGTATGAGGATATGTAATTAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGAGAGGAAAACTCTGCTATGGGTATGAGGATATGTAATTAGAA  1000

seq1  GTTAGCTGGATATTA-TGTTT--ATTTATCAATAGAGTAGGGGATTCTTC  1047
      | ||||||||||||| |||||   ||| |||||||||||  |||||||||
seq2  G-TAGCTGGATATTATTGTTTTATTTTTTCAATAGAGTA--GGATTCTTC  1047

seq1  CTAGGTTC-TGTGACCTCTCGAAATTAACTCTCCTTTTTCACCATGTG--  1094
      |||||||| |||||||||||| || |||||   |||||||||||||||  
seq2  CTAGGTTCTTGTGACCTCTCG-AACTAACTTCTCTTTTTCACCATGTGTG  1096

seq1  -ACTAAAAGCACAGCACAGAACTACAGGGCTCATTATAAAGGTGGG-CTA  1142
       ||| ||||||||||| |||||||||  ||||||  | |||||||| |||
seq2  AACT-AAAGCACAGCAAAGAACTACA-TGCTCAT--TTAAGGTGGGCCTA  1142

seq1  TGGAGCTGTGTGTATTATCACATGTTTTAATCCCAACACTTTGGGAGGTA  1192
      |||||| |||||| |||| ||||| | ||||||||||   ||||||||||
seq2  TGGAGC-GTGTGTGTTATTACATG-TCTAATCCCAAC---TTGGGAGGTA  1187


seq1: chr3_76377901_76379109
seq2: B6Ng01-296C05.g_67_1265 (reverse)

seq1  TTATACATTAAA-GTTTA--TGTAAAGATTCATTAAAATG-TCTCACCCT  46
      | |||| ||||| |||||  |||||||| ||  ||||||| |||||||| 
seq2  TAATACCTTAAAGGTTTATGTGTAAAGAATCCATAAAATGTTCTCACCC-  49

seq1  TTACTCCTAGACAA-TCGGTTTATCCCGATGCAGTATTTTTTCATTTACA  95
      | ||| |||||||| ||||||  |||||||||||||||||||||  ||||
seq2  TAACT-CTAGACAATTCGGTTATTCCCGATGCAGTATTTTTTCA--TACA  96

seq1  TTTTGTA-TATGCGAACTGTTACTCAATTTTTGATTACCTTTCTCCAATT  144
      ||||||| ||||||||||| ||||||   ||||||||||||||||| |||
seq2  TTTTGTATTATGCGAACTG-TACTCA---TTTGATTACCTTTCTCC-ATT  141

seq1  TATTTATAATTAATATTTATTTTAACTAAATAGTGGAATAATATTCAATT  194
      || |||||  ||||||||| ||||||||||||||||||||||| ||||||
seq2  TA-TTATA--TAATATTTA-TTTAACTAAATAGTGGAATAATA-TCAATT  186

seq1  TCCTTGATAAATTCCACTGCAGTTCATTGCAAAATTCTATAGATGTATTC  244
        | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  --CCTGATAAATTCCACTGCAGTTCATTGCAAAATTCTATAGATGTATTC  234

seq1  AATTAGCAGACAATGATACTTTAAAAGAAAAAATTTAATATGTTTTTAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCAGACAATGATACTTTAAAAGAAAAAATTTAATATGTTTTTAAT  284

seq1  ATTGTTAGTCTGCCAAATGTAGTACAACTAAAAGTTTATCTTAGAGTTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGTCTGCCAAATGTAGTACAACTAAAAGTTTATCTTAGAGTTTT  334

seq1  AATATAGACTAATTGAGGCTCAGTAGAACCATAGAAAGAGCCATATTTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGACTAATTGAGGCTCAGTAGAACCATAGAAAGAGCCATATTTTA  384

seq1  TAATCAGCACTAGATGATAAACATTTCATTTAGAAACACTATATTTTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGCACTAGATGATAAACATTTCATTTAGAAACACTATATTTTTTT  434

seq1  TGTTGTGTTTGGCCATTGCAAGCTCAGAATACTTCAATGTGTGTAGTGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTTGGCCATTGCAAGCTCAGAATACTTCAATGTGTGTAGTGGT  484

seq1  TTGATCTTGCTTGGCTTAGGTAGTGGCACTGTTAGGAAGTATGGCCTTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTGCTTGGCTTAGGTAGTGGCACTGTTAGGAAGTATGGCCTTTT  534

seq1  TAGAGGAAGTGTGTCATTGTGGGTGTGGGCTTTAAGACCCTCATCATAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGTGTGTCATTGTGGGTGTGGGCTTTAAGACCCTCATCATAGC  584

seq1  TGCTTGGAAGCCAGTCTTCTAGTAGTCTTCAGATGAAAATGTAGAACTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGAAGCCAGTCTTCTAGTAGTCTTCAGATGAAAATGTAGAACTCT  634

seq1  CAACTCTTCCTGCACCATGCCCACCCTGGTGCTGCCATGATTCTACTGTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTCCTGCACCATGCCCACCCTGGTGCTGCCATGATTCTACTGTA  684

seq1  ATGATAATAGATTGAACATCTTAACCTATAAGCCAGTCACAATTAAATGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATAGATTGAACATCTTAACCTATAAGCCAGTCACAATTAAATGT  734

seq1  TGTCTTTATAAGAGTGGTCATGGTGTCTGTTTATAGCAGTAAAACTCTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATAAGAGTGGTCATGGTGTCTGTTTATAGCAGTAAAACTCTAA  784

seq1  ATATGACAACATGTTAATATAGAAAAGAGAGAAATAGAAGATGGCTAGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAACATGTTAATATAGAAAAGAGAGAAATAGAAGATGGCTAGTA  834

seq1  ATGTAAGTTTGCTCAATTTATTTATTTTTCTTTGAAAAATCTTTTAAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTTTGCTCAATTTATTTATTTTTCTTTGAAAAATCTTTTAAAAA  884

seq1  GGTGCAAATCCTATATGTGGTTAAAAATTTTGCATGACTAAAATTCATGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAATCCTATATGTGGTTAAAAATTTTGCATGACTAAAATTCATGC  934

seq1  ATTCATATCATTTGTGGGCTCTTACATTTTATAAAAATTCAGTTATGTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATCATTTGTGGGCTCTTACATTTTATAAAAATTCAGTTATGTTT  984

seq1  TGTGAACAACTTTAACAACGTAATCTAGTAAATAAGTTTGTATATGTACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAACTTTAACAACGTAATCTAGTAAATAAGTTTGTATATGTACA  1034

seq1  CAACTTTATATCGTTCTCTATGATTTTCAGTACTTTTCTATGTATGTGTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTATATCGTTCTCTATGATTTTCAGTACTTTTCTATGTATGTGTG  1084

seq1  TATATGTATTACACATGTGTATTCACATGTATATAGGTAGATCTCAGTGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATTACACATGTGTATTCACATGTATATAGGTAGATCTCAGTGT  1134

seq1  TCATGAATTTTTTGTACATTAATGTGTAGCTTTAAGCTGATAGCAGGAAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATTTTTTGTACATTAATGTGTAGCTTTAAGCTGATAGCAGGAAT  1184

seq1  GTTCATCAAGAATTC  1209
      |||||||||||||||
seq2  GTTCATCAAGAATTC  1199


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