BAC Information

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BAC

Clone NameB6Ng01-296H22
Chromosome3 (Build37)
Map Location 88,733,297 - 88,838,139
singlet/doubletdoublet
Overlap geneDap3, Ash1l
Upstream geneBC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1
Downstream geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296H22.bB6Ng01-296H22.g
ACCGA092094GA092095
length1,110777
definitionB6Ng01-296H22.b B6Ng01-296H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,733,297 - 88,734,405)(88,837,363 - 88,838,139)
sequence
gaattccccggagccagtcacctgactcaggaagcgctcattggtagttt
tgaaattcttcagccaggtagaggcctctaagggttgatcaaagcgctgt
ttgttgtgagtggactgtagaagctcccggcagttttttacccaaagatg
agctaaaaaatggataagaaaacaaattaggaacagaagaaacttgagat
actgtttttctattttgtaaaaaaggaattgattgctttcattttgggtt
atggatgttctgacagaagaggtgctcgtccctttatactcgaggtgcag
atgtgagtggctgtgttgctgctttgaactgcacctgggttctttgcaag
agcagccagtgctcttatctgctgaatcatctgtttgccttacaaatgac
tgtttaaattatgagaaacattaaaaaacaacaataacaaatgaacatat
tttcttttgtgtggtggtactggggactgaccctctatgtccttgacctt
agactggacattacattataatcagtacataagacatcaagtgaactgcc
gtttctgcttactgctaatttttaaaggcaaattagaaaatgtggatatt
ggggcttgagagatggctcagtggttaagagcactgattgctcttccaga
ggtcctgagttcaattctcagcatccacatggtggctcagaaccatctat
aatgaggtcccatgcactcttccggtgtgtgtctgaagacagctacagtg
tactcatataaatgaaaataaatcttaaaaaaaaaaagtggatatttaaa
ctctgaacaaaagaggatatatgcaaagcatgaggactcaaatctgtacc
aaacagctctgaagtgtcaagaagcggtgcagatctgtggacactccgaa
cgcaaatagtaactgacacaaacccaaaacaaagtgttatatgtctgtag
ctgactccttgcgaggcaggggcagagtgggtgtgtttcagctcaagaat
tcagaccagcaagggtagtatagtatgggccactgtcctcctaagcagtc
accagtgctgccacagcaaggtgactgcctgaacgaagagaacagtcctt
accatctggg
gaattcagagaccatcagagaagaggaggcagaggagactgaactggctt
tggttttccagcgttaacttttgtttggaggctatgtagctctagttggc
ctggagctcacagaaacctctgcctctgcctcctgactgcatgaggagct
gtcaccactacacccaaggataactttgacagtattttagctaagctgaa
aaatctgctatttatttcattggtatgaatactcctatccccctatggtt
gttgtaaaaatagggccttgaacctttaactaaatttaaggcctgaggat
tcttttttaagtgttgttggcagttcatctacattctcctaagacctgca
tgaaatagaattctttttctttttggtgcacaaacacttttatttattta
tttatttatttatttatttatttatttatttgcttatttattacatgtaa
gtacactgtagctgtcttcagacgcaccagaagagggcatcagatctcat
tacgggtgtatgtgagccaccatgtggttgctgggatttgaacttcagac
ctttggaagagcagtcgggtgctcttacccactgagccatctatctcacc
agccccgaaatagaattcttatagcgcaaactctttgctaccaaagcaat
aaaaacaaaagggttgcccattgaaacaggaacttacggtaattctgaaa
tgtgaataaaggtttgcacattaaatatgtacacaaatttctttttctta
ttctctaaccttttataaggacggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88733297_88734405
seq2: B6Ng01-296H22.b_47_1156

seq1  GAATTCCCCGGAGCCAGTCACCTGACTCAGGAAGCGCTCATTGGTAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGGAGCCAGTCACCTGACTCAGGAAGCGCTCATTGGTAGTTT  50

seq1  TGAAATTCTTCAGCCAGGTAGAGGCCTCTAAGGGTTGATCAAAGCGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCTTCAGCCAGGTAGAGGCCTCTAAGGGTTGATCAAAGCGCTGT  100

seq1  TTGTTGTGAGTGGACTGTAGAAGCTCCCGGCAGTTTTTTACCCAAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGAGTGGACTGTAGAAGCTCCCGGCAGTTTTTTACCCAAAGATG  150

seq1  AGCTAAAAAATGGATAAGAAAACAAATTAGGAACAGAAGAAACTTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAAAATGGATAAGAAAACAAATTAGGAACAGAAGAAACTTGAGAT  200

seq1  ACTGTTTTTCTATTTTGTAAAAAAGGAATTGATTGCTTTCATTTTGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTTCTATTTTGTAAAAAAGGAATTGATTGCTTTCATTTTGGGTT  250

seq1  ATGGATGTTCTGACAGAAGAGGTGCTCGTCCCTTTATACTCGAGGTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTTCTGACAGAAGAGGTGCTCGTCCCTTTATACTCGAGGTGCAG  300

seq1  ATGTGAGTGGCTGTGTTGCTGCTTTGAACTGCACCTGGGTTCTTTGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTGGCTGTGTTGCTGCTTTGAACTGCACCTGGGTTCTTTGCAAG  350

seq1  AGCAGCCAGTGCTCTTATCTGCTGAATCATCTGTTTGCCTTACAAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGTGCTCTTATCTGCTGAATCATCTGTTTGCCTTACAAATGAC  400

seq1  TGTTTAAATTATGAGAAACATTAAAAAACAACAATAACAAATGAACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATTATGAGAAACATTAAAAAACAACAATAACAAATGAACATAT  450

seq1  TTTCTTTTGTGTGGTGGTACTGGGGACTGACCCTCTATGTCCTTGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTGTGGTGGTACTGGGGACTGACCCTCTATGTCCTTGACCTT  500

seq1  AGACTGGACATTACATTATAATCAGTACATAAGACATCAAGTGAACTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGACATTACATTATAATCAGTACATAAGACATCAAGTGAACTGCC  550

seq1  GTTTCTGCTTACTGCTAATTTTTAAAGGCAAATTAGAAAATGTGGATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCTTACTGCTAATTTTTAAAGGCAAATTAGAAAATGTGGATATT  600

seq1  GGGGCTTGAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTGAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCTCTTCCAGA  650

seq1  GGTCCTGAGTTCAATTCTCAGCATCCACATGGTGGCTCAGAACCATCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAATTCTCAGCATCCACATGGTGGCTCAGAACCATCTAT  700

seq1  AATGAGGTCCCATGCACTCTTCCGGTGTGTGTCTGAAGACAGCTACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTCCCATGCACTCTTCCGGTGTGTGTCTGAAGACAGCTACAGTG  750

seq1  TACTCATATAAATGAAAATAAATCTTAAAAAAAAAAAGTGGATATTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATATAAATGAAAATAAATCTTAAAAAAAAAAAGTGGATATTTAAA  800

seq1  CTCTGAACAAAAGAGGATATATGCAAAGCATGAGGACTCAAATCTGTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACAAAAGAGGATATATGCAAAGCATGAGGACTCAAATCTGTACC  850

seq1  AAACAGCTCTGAAGTGTCAAGAAGCGGTGCAGATCTGTGGACACTCCGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTCTGAAGTGTCAAGAAGCGGTGCAGATCTGTGGACACTCCGAA  900

seq1  CGCAAAATAGTAACTGACACAAACCCAAAACCAAAGTGTTATATGTCTGT  950
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGC-AAATAGTAACTGACACAAACCCAAAA-CAAAGTGTTATATGTCTGT  948

seq1  AGCTGAC-CCTTGCGAGGCAGGGGCAGGAGTGGGTGTGTTTCAGCTCAAG  999
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  AGCTGACTCCTTGCGAGGCAGGGGCA-GAGTGGGTGTGTTTCAGCTCAAG  997

seq1  AATTCAGACCAGCAAGGGTAGTATAGTAT-GGCCACTGT-CTCCTAAGCA  1047
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  AATTCAGACCAGCAAGGGTAGTATAGTATGGGCCACTGTCCTCCTAAGCA  1047

seq1  GTCA-CAGTGCTGCCCACAGCAAGGTGACTGCCTGACAGAGGAG-ACAGT  1095
      |||| |||||||| ||||||||||||||||||||||  || ||| |||||
seq2  GTCACCAGTGCTG-CCACAGCAAGGTGACTGCCTGAACGAAGAGAACAGT  1096

seq1  CCTTACCATCTGGG  1109
      ||||||||||||||
seq2  CCTTACCATCTGGG  1110

seq1: chr3_88837363_88838139
seq2: B6Ng01-296H22.g_66_842 (reverse)

seq1  GAACCGTCCTTATAAAAGGTTAGAGACTAAGAAAAATGAATTTGTGTACA  50
      |||||||||||||||||||||||||| |||||||||  ||||||||||||
seq2  GAACCGTCCTTATAAAAGGTTAGAGAATAAGAAAAAGAAATTTGTGTACA  50

seq1  TATTTAATGTGCAAAGCCTTTATTCACACTTCAGAATTACCGTAAGTTCC  100
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TATTTAATGTGCAAA-CCTTTATTCACATTTCAGAATTACCGTAAGTTCC  99

seq1  TGTTTCAATGGGCAA-CCTTTTGTTCTTATTGCTTTGGTAGCAAAGAGTT  149
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  TGTTTCAATGGGCAACCCTTTTGTTTTTATTGCTTTGGTAGCAAAGAGTT  149

seq1  TGCGCTATAAGAATTCTATTTCGGGGCTGGTGAGATAGATGGCTCAGTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTATAAGAATTCTATTTCGGGGCTGGTGAGATAGATGGCTCAGTGG  199

seq1  GTAAGAGCACCCGACTGCTCTTCCAAAGGTCTGAAGTTCAAATCCCAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGCACCCGACTGCTCTTCCAAAGGTCTGAAGTTCAAATCCCAGCA  249

seq1  ACCACATGGTGGCTCACATACACCCGTAATGAGATCTGATGCCCTCTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTGGCTCACATACACCCGTAATGAGATCTGATGCCCTCTTCT  299

seq1  GGTGCGTCTGAAGACAGCTACAGTGTACTTACATGTAATAAATAAGCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGTCTGAAGACAGCTACAGTGTACTTACATGTAATAAATAAGCAAA  349

seq1  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAGTGTTTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAGTGTTTGTG  399

seq1  CACCAAAAAGAAAAAGAATTCTATTTCATGCAGGTCTTAGGAGAATGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAAAGAAAAAGAATTCTATTTCATGCAGGTCTTAGGAGAATGTAG  449

seq1  ATGAACTGCCAACAACACTTAAAAAAGAATCCTCAGGCCTTAAATTTAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGCCAACAACACTTAAAAAAGAATCCTCAGGCCTTAAATTTAGT  499

seq1  TAAAGGTTCAAGGCCCTATTTTTACAACAACCATAGGGGGATAGGAGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTCAAGGCCCTATTTTTACAACAACCATAGGGGGATAGGAGTAT  549

seq1  TCATACCAATGAAATAAATAGCAGATTTTTCAGCTTAGCTAAAATACTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCAATGAAATAAATAGCAGATTTTTCAGCTTAGCTAAAATACTGT  599

seq1  CAAAGTTATCCTTGGGTGTAGTGGTGACAGCTCCTCATGCAGTCAGGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTATCCTTGGGTGTAGTGGTGACAGCTCCTCATGCAGTCAGGAGG  649

seq1  CAGAGGCAGAGGTTTCTGTGAGCTCCAGGCCAACTAGAGCTACATAGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGAGGTTTCTGTGAGCTCCAGGCCAACTAGAGCTACATAGCCT  699

seq1  CCAAACAAAAGTTAACGCTGGAAAACCAAAGCCAGTTCAGTCTCCTCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAAGTTAACGCTGGAAAACCAAAGCCAGTTCAGTCTCCTCTGC  749

seq1  CTCCTCTTCTCTGATGGTCTCTGAATTC  777
      ||||||||||||||||||||||||||||
seq2  CTCCTCTTCTCTGATGGTCTCTGAATTC  777