BAC Information

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BAC

Clone NameB6Ng01-296J13
Chromosome3 (Build37)
Map Location 18,317,601 - 18,318,706
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296J13.bB6Ng01-296J13.g
ACCGA092169GA092170
length1,2041,116
definitionB6Ng01-296J13.b B6Ng01-296J13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaatagaggaatatcaaatggccaagaagcacttaaagaaatg
tgcaaagtccttagtcatcagggaaatgtaaatcaaaacaactttgtgat
tccaccttatattaatcagaacggctgagatcaaaactcaagtgatagca
tctgctgtcacagatttggataaagagaaacattcctccattgctggtag
gattgcacactggtacaactaatctagaaattaacctaccaggtctgcaa
aatattggaaataggtatagctaaaaacccagctatactactcctgggca
tattatcaaaagttgctccaccataccacaaggatatgtgttccactatg
ctcatagcagccttatatgtaatagccagaatctggaaacaattcagata
tccctcaaagaatggttacaaaaaatgtgattcacttacacaatggaata
ttattcagatattaaaaccaaggacatcttgaatttgcagacagattgat
ggaactagaaaatatcatcctaagtgaggtaaccaagacgccaaatgaca
ttcatggtatgtactcactgataagtggatgttaaccaaaaaggacagaa
tacctaggacacagtggggtaacaaaataatcatgtgaggcagagggagg
gagggagggacctgggtctaagaggtgaggagaaagggaaaagggaaaca
gcatcaggtatgggagcaacaggagagaagcccagaaggccatgagaatg
aatgaagattagtagcctcttggggtaggagatggggggaccctctagaa
agtcacagagacccttgagttgagagaatctcacgactcaatgggggtag
ccttagccaaaatgcccaacactggaaagattgaacctgaagagtccacc
tccagtagaggtagaggaaatgcaaggccagtgacagacctcaattgcaa
tccatctcatgggggtggaggaaccacaccaaggcctgacactattactg
aagcctaggatgtgcctataggtaggagcctagcatcgctgtcctctgaa
agccctattagcagctgactgagaccgatgcagatacctatctcacattt
actgaggtcaggactcctatggctgattagataggactgaaaaagcctga
gataggtaccctttgcagacctgccagtctcacctaatctggaccatggt
ggca

gaattccttcacactagagccctccctggagtgctggagagatagcatgt
tagagacctccaacatcttcatgaatctgaaacaaatcacctggtttgct
cgtagaaagagagaagtcagtggaaagccaaaggacagtagtggtcaaca
gcagagtcagaccagatgaaatcctgagataccaaactttcgatttgtaa
agaatgaacaaaaccataaagtgctcagcaatgtaaaacaaaaaggaggc
ggctcctcatttggagtttcctggaaaaaagaaaaacatgagaaggattc
ccaagcctgctggtagacacttagcaaaaccaaagatttgaccagagact
tcgtccagtgtagcaaggagacaccagagaagagacccattatgctgcta
caatcaagtaatgggttcagcaaacaaaacacctagggaaaaaaatacaa
ctgagattctcaggttggaaggccagagactgtactttttatctctaaat
ccaaagttctcatgcctctgtggaataagccattaggaacaggcaagggt
gcagtttcatgtcagcaaatattttaggaacaagtataactggacacagc
agaataaattagtagaactacctttttcacagcttccagaccctatcaaa
gtccctgatttcaaattatactgcaaagctacagtaatgaaacagtatag
tattggcacacacacacacacacacacacacacacacacacacacgcaag
ggatagtatacacaaccaaaataaattgtatcaccatgtgacatttaaca
aaactatgataaaatccatatgttagagaaacagcaacatttttaacaaa
tggtgcttagaaaactggacatcaacatatagaataaaatagattgctct
ttctcacgtcacacaaattaacttgaaatggattaaatactttcaataag
attaaaaactctaacatttcctaggaaaacaaaataaaaaatatttttag
atataacccatggtgcaagtagttgctagaatatgactcaggtgtctagg
ggaaaaatatccagaaacctgatgccaaggattgtattattttggaaagt
tctacacagcagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18317601_18318706
seq2: B6Ng01-296J13.g_66_1181

seq1  GAATTCCTTCACACTAGAGCCCTCCCTGGAGTGCTGGAGAGATAGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCACACTAGAGCCCTCCCTGGAGTGCTGGAGAGATAGCATGT  50

seq1  TAGAGACCTCCAACATCTTCATGAATCTGAAACAAATCACCTGGTTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCTCCAACATCTTCATGAATCTGAAACAAATCACCTGGTTTGCT  100

seq1  CGTAGAAAGAGAGAAGTCAGTGGAAAGCCAAAGGACAGTAGTGGTCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAAAGAGAGAAGTCAGTGGAAAGCCAAAGGACAGTAGTGGTCAACA  150

seq1  GCAGAGTCAGACCAGATGAAATCCTGAGATACCAAACTTTCGATTTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCAGACCAGATGAAATCCTGAGATACCAAACTTTCGATTTGTAA  200

seq1  AGAATGAACAAAACCATAAAGTGCTCAGCAATGTAAAACAAAAAGGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAACAAAACCATAAAGTGCTCAGCAATGTAAAACAAAAAGGAGGC  250

seq1  GGCTCCTCATTTGGAGTTTCCTGGAAAAAAGAAAAACATGAGAAGGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCATTTGGAGTTTCCTGGAAAAAAGAAAAACATGAGAAGGATTC  300

seq1  CCAAGCCTGCTGGTAGACACTTAGCAAAACCAAAGATTTGACCAGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGCTGGTAGACACTTAGCAAAACCAAAGATTTGACCAGAGACT  350

seq1  TCGTCCAGTGTAGCAAGGAGACACCAGAGAAGAGACCCATTATGCTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCAGTGTAGCAAGGAGACACCAGAGAAGAGACCCATTATGCTGCTA  400

seq1  CAATCAAGTAATGGGTTCAGCAAACAAAACACCTAGGGAAAAAAATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGTAATGGGTTCAGCAAACAAAACACCTAGGGAAAAAAATACAA  450

seq1  CTGAGATTCTCAGGTTGGAAGGCCAGAGACTGTACTTTTTATCTCTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTCTCAGGTTGGAAGGCCAGAGACTGTACTTTTTATCTCTAAAT  500

seq1  CCAAAGTTCTCATGCCTCTGTGGAATAAGCCATTAGGAACAGGCAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTCTCATGCCTCTGTGGAATAAGCCATTAGGAACAGGCAAGGGT  550

seq1  GCAGTTTCATGTCAGCAAATATTTTAGGAACAAGTATAACTGGACACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCATGTCAGCAAATATTTTAGGAACAAGTATAACTGGACACAGC  600

seq1  AGAATAAATTAGTAGAACTACCTTTTTCACAGCTTCCAGACCCTATCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATTAGTAGAACTACCTTTTTCACAGCTTCCAGACCCTATCAAA  650

seq1  GTCCCTGATTTCAAATTATACTGCAAAGCTACAGTAATGAAACAGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGATTTCAAATTATACTGCAAAGCTACAGTAATGAAACAGTATAG  700

seq1  TATTGGCACACACACACACACACACACACACACACACACACACACGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCACACACACACACACACACACACACACACACACACACACGCAAG  750

seq1  GGATAGTATACACAACCAAAATAAATTGTATCACCATGTGACATTTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTATACACAACCAAAATAAATTGTATCACCATGTGACATTTAACA  800

seq1  AAACTATGATAAAATCCATATGTTAGAGAAACAGCAACATTTTTAACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGATAAAATCCATATGTTAGAGAAACAGCAACATTTTTAACAAA  850

seq1  TGGTGCTTAGAAAACTGGACATCAACATATAGAATAAAATAGATTGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTAGAAAACTGGACATCAACATATAGAATAAAATAGATTGCTCT  900

seq1  TTCTCACGTCACACAAATTAACTTGAAATGGATTAAATAC-TTCAATAAG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTCACGTCACACAAATTAACTTGAAATGGATTAAATACTTTCAATAAG  950

seq1  ATTAAAAACTCTAACATTT-CTAGGAAAACAAA--TAAAAATATTTTTAG  996
      ||||||||||||||||||| |||||||||||||   ||||||||||||||
seq2  ATTAAAAACTCTAACATTTCCTAGGAAAACAAAATAAAAAATATTTTTAG  1000

seq1  ATATAA-CCAT-GTGCAAGTAGTTGCTAG-ATATGACTTCAGTGTCTAGG  1043
      |||||| |||| ||||||||||||||||| ||||||||   |||||||||
seq2  ATATAACCCATGGTGCAAGTAGTTGCTAGAATATGACTCAGGTGTCTAGG  1050

seq1  GGAAAAATAT-CAGAAA-CTGATGCAAAGAATTGTA-TATTT--GAAAGT  1088
      |||||||||| |||||| ||||||| ||| |||||| |||||  ||||||
seq2  GGAAAAATATCCAGAAACCTGATGCCAAGGATTGTATTATTTTGGAAAGT  1100

seq1  TCTACACAGCAAAGAAAA  1106
      ||||||||||  ||||||
seq2  TCTACACAGC--AGAAAA  1116


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