BAC Information

Click to search

BAC

Clone NameB6Ng01-296N18
Chromosome3 (Build37)
Map Location 55,253,364 - 55,254,481
singlet/doubletsinglet
Overlap geneDclk1
Upstream geneLOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2
Downstream geneMab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296N18.bB6Ng01-296N18.g
ACCGA092363GA092364
length8791,133
definitionB6Ng01-296N18.b B6Ng01-296N18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcacacttttaaagcagacctaatataaatattcttcaaact
attccacaaaatagaaacagaaggaaaactacccagttcattctatgaag
ccacaattacacttatacctaaatcacacaaagaccaaacaaaaaaagag
aacttcagaccaatctcccttatgaacatggatgcaaaaatagtcaataa
aattcttgccgggctggagagatggctcagcagttaaaagcactgactgc
tcttccggaggtcctgagttcaaatcccagcaaccacatggtgactcatg
accatctgtaatgagattggatgccctcttctggtgtgtctgaagacagc
ttacatatacttacatataataaataaataaatctttaaaaaaaattctt
gccaaccgaatccaagaacacataaaaatgatcactctccacaatcaagt
aggcttcatcccagggctgcagggttggttcaatatacaaaaattcatca
atacaatctactacgtaaacaaactcaaaaaacaaaacaaaacaaaactg
caagatcatttcattagatgctgaaaaagcatttgacaaaattcagcttc
ccttcatgttaagagtcttagaaagatcaggaattcaaggcccatacctg
aagatagtaaaagcaatacaggatcaaaccagaagccaacgtcaaacaaa
atggggagaaacttgaagcaatcccactaaaatcagggactagacaaggg
ggcctacatatgttgcagaggatgggcttgtgaggcatcaatgggaggag
aggtccttggtcctatgaaggcttgactgatgtcccagtgtagaggaatt
gagggcagggaggtgggagtggggtgggt
gaattccttatcttccaacccactcattcagcaaatattttgagcactga
caatgtattcttctagttactaaaaattgaatttcaagttccaaggacta
aacacatatgagggaaataaccaggtgactaaatgctcatttatggggat
gctactgagttattaccgtaactaaatgctgaaagcagtttaaagtttaa
atgcttaagtgaactagaattctccgtgtggcaaaatgcttgacagctac
caaatgccagtgtgtaaaggcccatgagttagtttgcttttctgttgctg
tgacagagaccatgcaacctgaggatcaaaggtttatttggagtattcat
cccccaataccacttccatcactgagggaagccaaggggataactcaagt
ggggcaggaacctggaggcacgaactgaagctgagaccgtggaggagtgc
tggtcattgatttgttccttgggttgtgctcagcttgcttttttatacca
cccaaaaccaccttgtccagaggtggcactagctatagtgggctggacta
taccacatcaatcatcagtcaaggagatgtgacacagacatgctctcggg
ccaattcaatgcaggcttttctcaactgaagttccctcttcccaaatggt
tctagcttatgtcaagttgagaaaaaaaatttaactagcactcccaagag
ctacttgaagcgaaagagggttagccacagaacactaggtagatcaactt
ccttgttacttaaaaatacaaatgattagaaaaatattctagaactttaa
aaagaaggcataatttgatcatgggttatcaggaaatcttagtatacata
tttttaatctaattgattatcatttcaaaaaatgttttaaatataaacta
tggattcttggaagcaagatggttgtgcatttacatgtcataatttaatc
cagacctttcacgaagacaaaaatagggctttttaaaaattatttacagt
acttagccctgaatgtaatgaacatggagaacctggagagtttacgtatt
agaagggaggacttgttttttcatcttcacagaaaaggcactccttttat
agaatgccaagtcaggctcatggcagcttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55253364_55254481
seq2: B6Ng01-296N18.g_70_1202

seq1  GAATTCCTTATCTTCCAACCCACTCATTCAGCAAATATTTTGAGCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCTTCCAACCCACTCATTCAGCAAATATTTTGAGCACTGA  50

seq1  CAATGTATTCTTCTAGTTACTAAAAATTGAATTTCAAGTTCCAAGGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATTCTTCTAGTTACTAAAAATTGAATTTCAAGTTCCAAGGACTA  100

seq1  AACACATATGAGGGAAATAACCAGGTGACTAAATGCTCATTTATGGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATATGAGGGAAATAACCAGGTGACTAAATGCTCATTTATGGGGAT  150

seq1  GCTACTGAGTTATTACCGTAACTAAATGCTGAAAGCAGTTTAAAGTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGAGTTATTACCGTAACTAAATGCTGAAAGCAGTTTAAAGTTTAA  200

seq1  ATGCTTAAGTGAACTAGAATTCTCCGTGTGGCAAAATGCTTGACAGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAAGTGAACTAGAATTCTCCGTGTGGCAAAATGCTTGACAGCTAC  250

seq1  CAAATGCCAGTGTGTAAAGGCCCATGAGTTAGTTTGCTTTTCTGTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCAGTGTGTAAAGGCCCATGAGTTAGTTTGCTTTTCTGTTGCTG  300

seq1  TGACAGAGACCATGCAACCTGAGGATCAAAGGTTTATTTGGAGTATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGACCATGCAACCTGAGGATCAAAGGTTTATTTGGAGTATTCAT  350

seq1  CCCCCAATACCACTTCCATCACTGAGGGAAGCCAAGGGGATAACTCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAATACCACTTCCATCACTGAGGGAAGCCAAGGGGATAACTCAAGT  400

seq1  GGGGCAGGAACCTGGAGGCACGAACTGAAGCTGAGACCGTGGAGGAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGAACCTGGAGGCACGAACTGAAGCTGAGACCGTGGAGGAGTGC  450

seq1  TGGTCATTGATTTGTTCCTTGGGTTGTGCTCAGCTTGCTTTTTTATACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTGATTTGTTCCTTGGGTTGTGCTCAGCTTGCTTTTTTATACCA  500

seq1  CCCAAAACCACCTTGTCCAGAGGTGGCACTAGCTATAGTGGGCTGGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACCACCTTGTCCAGAGGTGGCACTAGCTATAGTGGGCTGGACTA  550

seq1  TACCACATCAATCATCAGTCAAGGAGATGTGACACAGACATGCTCTCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATCAATCATCAGTCAAGGAGATGTGACACAGACATGCTCTCGGG  600

seq1  CCAATTCAATGCAGGCTTTTCTCAACTGAAGTTCCCTCTTCCCAAATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCAATGCAGGCTTTTCTCAACTGAAGTTCCCTCTTCCCAAATGGT  650

seq1  TCTAGCTTATGTCAAGTTGAGAAAAAAAATTTAACTAGCACTCCCAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTATGTCAAGTTGAGAAAAAAAATTTAACTAGCACTCCCAAGAG  700

seq1  CTACTTGAAGCGAAAGAGGGTTAGCCACAGAACACTAGGTAGATCAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGAAGCGAAAGAGGGTTAGCCACAGAACACTAGGTAGATCAACTT  750

seq1  CCTTGTTACTTAAAAATACAAATGATTAGAAAAATATTCTAGAACTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTACTTAAAAATACAAATGATTAGAAAAATATTCTAGAACTTTAA  800

seq1  AAAGAAGGCATAATTTGATCATGGGTTATCAGGGAATCTTAGTATACATA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGAAGGCATAATTTGATCATGGGTTATCAGGAAATCTTAGTATACATA  850

seq1  TTTTTAATCTAATTGATTATCATTTCAAAAAATGTTTTAAATATAAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATCTAATTGATTATCATTTCAAAAAATGTTTTAAATATAAACTA  900

seq1  TGGATTCTTGGAAGCAAGAT-GTTGTGCATTTACATGTCATAA-TTAATC  948
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TGGATTCTTGGAAGCAAGATGGTTGTGCATTTACATGTCATAATTTAATC  950

seq1  CAGACCTTTCACGAAGACAAAAATAGGGCTTTTTAAAAAATTATTTACAG  998
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGACCTTTCACGAAGACAAAAATAGGGCTTTTT-AAAAATTATTTACAG  999

seq1  TACTTAGCACTGAATGTAATGAACAT-GAGAAC--TGAGAGTTTACGTA-  1044
      |||||||| ||||||||||||||||| ||||||   ||||||||||||| 
seq2  TACTTAGCCCTGAATGTAATGAACATGGAGAACCTGGAGAGTTTACGTAT  1049

seq1  TAGA--GGA-GACT--GTTTTTCATCTTCACAG-AAAGGCACTC---TTA  1085
      ||||  ||| ||||   |||||||||||||||| ||||||||||   |||
seq2  TAGAAGGGAGGACTTGTTTTTTCATCTTCACAGAAAAGGCACTCCTTTTA  1099

seq1  TAG-ATGCAAAGCCAGCTTCCTTGCAGCTTCCTG  1118
      ||| |||| ||| |||  || | |||||||||||
seq2  TAGAATGCCAAGTCAGGCTCATGGCAGCTTCCTG  1133