BAC Information

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BAC

Clone NameB6Ng01-297D01
Chromosome3 (Build37)
Map Location 116,208,017 - 116,296,674
singlet/doubletdoublet
Overlap geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a
Downstream geneSass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297D01.bB6Ng01-297D01.g
ACCGA092609GA092610
length6811,183
definitionB6Ng01-297D01.b B6Ng01-297D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,208,017 - 116,208,693)(116,295,494 - 116,296,674)
sequence
gaattcatgtgactagaaacagaatgtttaacaaggagttttctccttat
tgtcgacatgaagaatcacaaaacttaggcacagaatgtgaagtgttttt
aaaaatgaagtatctagtcagatttttaaaatgaattgctgttcttgaaa
ataaaaccaatcacaataaacagagttagtcacataggttttcccctgac
cttcacacacactccaaagcatgaatgtttatacatgtgtacatgtgtgt
atacacaggagcatgcacatgcatgtgcgtgtatgtgtgtgtgcacgcac
aaacaaatacaataaataatatttctaaaagttaggaggcatagtcaggt
ggtggtggcacacgccattaatcccagcactcgggagacgagaaggggga
tgtctgtgggttcaaggccagcctggtcttcagagtgagttccagggtta
cactttaaaaccctgtttggggaaggggggggattaggaggcaaaagact
taaattctaatgtcacttcttaccctgactccaagacggaggctaagtca
cttaacaccaatggggtttgacttcctaatttacaatatggaagttttta
gaacaaatgcttttctctttcagctttcaaattttgcgactgtcttaaat
tattactatgacttttttctttttgtataaa
gaattctcctgccttagcctcccaactagctggtctccatcaaagaatca
cactggaatttaatttaaaagtctatacatgaaataatgttgtttttttt
aatactgaaaattccttaactttctctaaaattcagtgtgcgtatcttca
tgaacattctgaaataaattgaaataaacaattgagaaaaattaagagta
aatacttggtcagctttggctgtagggctagtactaaacgttattttgct
tttaaaaattcaattttcacaaaccttaggaagcaagtcatactattatt
ctacttaataatatagtaagtctatacttaatatagaaagtctatactat
tatttacatgaagcagtcaggattatagagttagcagctaatagaaagag
ctgagaatcacacctaaccactggcctctggatttaataattgggccatc
ctgttgcatccaggttgataggatctgtggggcagacctgccaacattgt
ttcccttgcttttctcccagtgcctataattaaatgcataaaacataaaa
gactgtaactagcatttagaaaagttgcaaagctagtgaatatgacccat
tctaaattgttaaagccatgccttgttgttcctggcgtattttctcctgt
actctattctgagagagggtctgagggtcaccctggctggcctttggctc
tgtctgcccttcctctggagagctgatattcaaagcatgctccaccacgc
ccatcatttccccatatttgaacacctttagacaaatacgcattttaaaa
tcaatttaaatgggcaacacttttcaaaaagagcaaggatgcaagtaatg
agtattttagtcagctcaatttagccacttatacccagtatatatttatt
tcaaaagatcattttgtacatgatgaatattgttgttagttaatccaaag
tacatgggttaacatcttttcttaatggtgcatacattactgtacccatt
tttaggaggtgttatcttctgatgcaaaattaacattagcaagccaaaac
agtacttattcattcatacagaagcgaggctacaatgaagacttcttatt
tatgcggcatgaccttatctgcttaattttttcattgtatccttttaagt
ttctacttaattaggaatagaacacagtgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116208017_116208693
seq2: B6Ng01-297D01.b_44_724

seq1  GAATTCATGTGACTAGAAACAGAATGTTTAACAAGGAGTTTTCTCCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGACTAGAAACAGAATGTTTAACAAGGAGTTTTCTCCTTAT  50

seq1  TGTCGACATGAAGAATCACAAAACTTAGGCACAGAATGTGAAGTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGACATGAAGAATCACAAAACTTAGGCACAGAATGTGAAGTGTTTTT  100

seq1  AAAAATGAAGTATCTAGTCAGATTTTTAAAATGAATTGCTGTTCTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAGTATCTAGTCAGATTTTTAAAATGAATTGCTGTTCTTGAAA  150

seq1  ATAAAACCAATCACAATAAACAGAGTTAGTCACATAGGTTTTCCCCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCAATCACAATAAACAGAGTTAGTCACATAGGTTTTCCCCTGAC  200

seq1  CTTCACACACACTCCAAAGCATGAATGTTTATACATGTGTACATGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACACACTCCAAAGCATGAATGTTTATACATGTGTACATGTGTGT  250

seq1  ATACACAGGAGCATGCACATGCATGTGCGTGTATGTGTGTGTGCACGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGGAGCATGCACATGCATGTGCGTGTATGTGTGTGTGCACGCAC  300

seq1  AAACAAATACAATAAATAATATTTCTAAAAGTTAGGAGGCATAGTCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATACAATAAATAATATTTCTAAAAGTTAGGAGGCATAGTCAGGT  350

seq1  GGTGGTGGCACACGCCATTAATCCCAGCACTCGGGAGACGAGAAGGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCACACGCCATTAATCCCAGCACTCGGGAGACGAGAAGGGGGA  400

seq1  TGTCTGTGGGTTCAAGGCCAGCCTGGTCTTCAGAGTGAGTTCCAGGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGGGTTCAAGGCCAGCCTGGTCTTCAGAGTGAGTTCCAGGGTTA  450

seq1  CACTTTAAAACCCTGTTTGGGGAAGGGGGGGGATTAGGAGGCAAAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAAACCCTGTTTGGGGAAGGGGGGGGATTAGGAGGCAAAAGACT  500

seq1  TAAATTCTAATGTCACTTCTTACCCTGACTCCAAGACGGAGGCTAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAATGTCACTTCTTACCCTGACTCCAAGACGGAGGCTAAGTCA  550

seq1  CTTAACACCAATGGGGTTTGACTTCCTAATTTACAATATGGAAG-TTTTA  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTAACACCAATGGGGTTTGACTTCCTAATTTACAATATGGAAGTTTTTA  600

seq1  GAACAAATGC-TTTCTCTTTCAGC-TTCAAATTTTGCGACTGTCTT-AAT  646
      |||||||||| ||||||||||||| ||||||||||||||||||||| |||
seq2  GAACAAATGCTTTTCTCTTTCAGCTTTCAAATTTTGCGACTGTCTTAAAT  650

seq1  TATAACTATGACTTTTTCTTTTTTGTATAAA  677
      ||| |||||||||||||  ||||||||||||
seq2  TATTACTATGACTTTTTTCTTTTTGTATAAA  681

seq1: chr3_116295494_116296674
seq2: B6Ng01-297D01.g_67_1249 (reverse)

seq1  CCCACAGTGTGTTTCTATTCCTAAAATAAGGTAAGAAAACTTAAAGGATA  50
      |||||| |||| |||||||||| || ||||   |||||  | ||||||||
seq2  CCCACACTGTG-TTCTATTCCT-AATTAAG--TAGAAACTTAAAAGGATA  46

seq1  CAATGAAAAA--TAAGCAAGATTAGGTCATGCCGCAT-AATAAG-AGTCT  96
      ||||||||||  ||||| |||| |||||||||||||| |||||| |||||
seq2  CAATGAAAAAATTAAGC-AGATAAGGTCATGCCGCATAAATAAGAAGTCT  95

seq1  TCATTGTAG-CTCGCTTCTGTATGAATGAATAAGTACTGTTTTGGCTTGC  145
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTAGCCTCGCTTCTGTATGAATGAATAAGTACTGTTTTGGCTTGC  145

seq1  TAATG-TAATTTTGCATCAG-AGATAACACCTCCTAAAAATGGGTACAGT  193
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  TAATGTTAATTTTGCATCAGAAGATAACACCTCCTAAAAATGGGTACAGT  195

seq1  AATTGTATGCACCATTAAGAAAAGATGTTAA-CCATGTACTTTGGATTAA  242
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AA-TGTATGCACCATTAAGAAAAGATGTTAACCCATGTACTTTGGATTAA  244

seq1  CTAACAACAATATTCATCATGTACAAAATGATCTTTTGAAATAAATATAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACAATATTCATCATGTACAAAATGATCTTTTGAAATAAATATAT  294

seq1  ACTGGGTATAAGTGGCTAAATTGAGCTGACTAAAATACTCATTACTTGCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTATAAGTGGCTAAATTGAGCTGACTAAAATACTCATTACTTGCA  344

seq1  TCCTTGCTCTTTTTGAAAAGTGTTGCCCATTTAAATTGATTTTAAAATGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTCTTTTTGAAAAGTGTTGCCCATTTAAATTGATTTTAAAATGC  394

seq1  GTATTTGTCTAAAGGTGTTCAAATATGGGGAAATGATGGGCGTGGTGGAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTCTAAAGGTGTTCAAATATGGGGAAATGATGGGCGTGGTGGAG  444

seq1  CATGCTTTGAATATCAGCTCTCCAGAGGAAGGGCAGACAGAGCCAAAGGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTGAATATCAGCTCTCCAGAGGAAGGGCAGACAGAGCCAAAGGC  494

seq1  CAGCCAGGGTGACCCTCAGACCCTCTCTCAGAATAGAGTACAGGAGAAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGTGACCCTCAGACCCTCTCTCAGAATAGAGTACAGGAGAAAA  544

seq1  TACGCCAGGAACAACAAGGCATGGCTTTAACAATTTAGAATGGGTCATAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCAGGAACAACAAGGCATGGCTTTAACAATTTAGAATGGGTCATAT  594

seq1  TCACTAGCTTTGCAACTTTTCTAAATGCTAGTTACAGTCTTTTATGTTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGCTTTGCAACTTTTCTAAATGCTAGTTACAGTCTTTTATGTTTT  644

seq1  ATGCATTTAATTATAGGCACTGGGAGAAAAGCAAGGGAAACAATGTTGGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAATTATAGGCACTGGGAGAAAAGCAAGGGAAACAATGTTGGC  694

seq1  AGGTCTGCCCCACAGATCCTATCAACCTGGATGCAACAGGATGGCCCAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCCCCACAGATCCTATCAACCTGGATGCAACAGGATGGCCCAAT  744

seq1  TATTAAATCCAGAGGCCAGTGGTTAGGTGTGATTCTCAGCTCTTTCTATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATCCAGAGGCCAGTGGTTAGGTGTGATTCTCAGCTCTTTCTATT  794

seq1  AGCTGCTAACTCTATAATCCTGACTGCTTCATGTAAATAATAGTATAGAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTAACTCTATAATCCTGACTGCTTCATGTAAATAATAGTATAGAC  844

seq1  TTTCTATATTAAGTATAGACTTACTATATTATTAAGTAGAATAATAGTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATTAAGTATAGACTTACTATATTATTAAGTAGAATAATAGTAT  894

seq1  GACTTGCTTCCTAAGGTTTGTGAAAATTGAATTTTTAAAAGCAAAATAAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTTCCTAAGGTTTGTGAAAATTGAATTTTTAAAAGCAAAATAAC  944

seq1  GTTTAGTACTAGCCCTACAGCCAAAGCTGACCAAGTATTTACTCTTAATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTACTAGCCCTACAGCCAAAGCTGACCAAGTATTTACTCTTAATT  994

seq1  TTTCTCAATTGTTTATTTCAATTTATTTCAGAATGTTCATGAAGATACGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAATTGTTTATTTCAATTTATTTCAGAATGTTCATGAAGATACGC  1044

seq1  ACACTGAATTTTAGAGAAAGTTAAGGAATTTTCAGTATTAAAAAAAACAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATTTTAGAGAAAGTTAAGGAATTTTCAGTATTAAAAAAAACAA  1094

seq1  CATTATTTCATGTATAGACTTTTAAATTAAATTCCAGTGTGATTCTTTGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTCATGTATAGACTTTTAAATTAAATTCCAGTGTGATTCTTTGA  1144

seq1  TGGAGACCAGCTAGTTGGGAGGCTAAGGCAGGAGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACCAGCTAGTTGGGAGGCTAAGGCAGGAGAATTC  1183