BAC Information

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BAC

Clone NameB6Ng01-297G15
Chromosome3 (Build37)
Map Location 105,629,749 - 105,756,776
singlet/doubletdoublet
Overlap geneAdora3, I830077J02Rik, Atp5f1
Upstream geneCapza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637
Downstream geneWdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297G15.bB6Ng01-297G15.g
ACCGA092776GA092777
length1,0801,135
definitionB6Ng01-297G15.b B6Ng01-297G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,755,686 - 105,756,776)(105,629,749 - 105,630,881)
sequence
gaattcaaatgtaccaaacacttccttagtctttttttttcttatttcta
aaaccaaaatatatttcattgtagctactttgaaggtaaaaaaaaaatgc
atgtataaaattgtcaaagaataaaatcttttagaacatgcttcacatca
ggtatcaattgggataaattgaaacacaactgtttatttggaataaaaga
aaaaaacctatgcttccatttgtgtttgtttgcttgattggttggtgata
ttggggccctgattagggcatataaaatcaaggctggccttgaattcctg
aatcccttaatgtccatctcctaaatgatagaatttatttattaaatgta
agtacactctagctgtcttcagacacaccagtagagggcacccaatctca
ttaaagatggttgtgagccaccatgtggttgttgagatttgaactcagga
ccttcggaagagcaatccatgctcttacccactgagccatctctccagcc
caagtgatagaattttattttgacttttgagacaggatctctgtatcctt
gctggcctggtgctcagtttgtgtacccagctgactttgaacttgtggac
attctgcttctgacaatttctttttccttttttttttttttttagattta
ttttaagtatttatatgagtatactgtggctgtcttcagacacacaccac
aagagtacatcagatcccataatagatggttgtgagccccatgtggttgc
tgggaattgaactcaggacctctgaaagaacattcggtgctcttaaccgc
tgagccatctctccagcctcttctgataatttcatacatgtactttggtc
agattcattcttcattaccctctttctccccaacaagtccttttcctact
ttcatgtttctgtttttgttgactgtcggggtttgtttatagaagcatgg
gcagtttaccagtggctataccactgaaaaaatgactccttcagcaccat
taactgctcaagtgaaggtgagacctcatgacttctgcacatcatgatga
tgtggaagctcatcttttacatgtggaata
gaattcagctgaactcttgaattcggagagaaaggagctattaaggacaa
ctcatgttgaattttgaggttattgactttgggctcttgcttccttctca
tgaggctgggatgttcatgatgtagagagtgcatatagctgctaagagca
actacttttctggaaactgaaacacaaagcagtatgcaaatgaagccaag
tatttgatgggctagaagaaagatccaggtttttgatggctcatgccatc
acagtccaaggcaacaagactttagtaccatggagattacatccttttaa
ttaataaaaataataataccatgcatttacaaattaaaaaacatcacttt
caaatagccttgggagtaaatcatgggctagagatacagtgcagtggtag
ggggcgtgcttagcatcacaaagctctaggttcaaaactcagggggaaca
aagaacttcaacacaaaacccaaatacctgacttattttattttacttaa
tttttgagacagggcctcattctgtagccctggccaacctggaatgcctt
ctatagacgaactcagagatcttccagtctctatcaataaagcacaattc
taagtagctttaggtataatcatacaaatgaagaaacaaatcataactaa
aattagaaaatgtgtacagtggcaaataacaaataaaaatatgttcccag
gttctcctgaaagaagcttcattagaaattttaagaaatcagaaattaag
gagctgtaagtgttgagctcaagataaagggatagcagcacagaggaaag
gcagagggaggcaaatgctaaataatagaagtcaaaattaaaataagtta
taatagaaactgtcaagaaaacagaatttggcaagcagtaaagactaata
aaattgagatagattaaaagggaaaatcatttatatatgcatatacatat
ataacagaatttattaaaataagaagaatgtcataaacctcatacaagta
aattggaacaattacatgacatacccagttccttagaaaaatgaacttac
aaagttggactcaagaagaaataagaaaaatctaatttaggactacagct
atttctaggccagttgtactggtacttaacatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105755686_105756776
seq2: B6Ng01-297G15.b_46_1125 (reverse)

seq1  TATTTCACATGTATAAGATTGAGCTGTCCACATTCAATCATTGATGTTGC  50
      |||| |||||||| |||| |||||| |||||||   |||| ||||| |||
seq2  TATTCCACATGTAAAAGA-TGAGCT-TCCACAT--CATCA-TGATG-TGC  44

seq1  AGGAAGTCATGAGGTCTCACCCTTCACTTTGAGCAGTTAATGGTTGCTGA  100
      | ||||||||||||||||| ||||||| ||||||||||||||| ||||||
seq2  A-GAAGTCATGAGGTCTCA-CCTTCAC-TTGAGCAGTTAATGG-TGCTGA  90

seq1  AGGAGTCATTTTTTTCAGTGGTATAGCCACTGGTAAACTGCCCATGCTTC  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCA-TTTTTTCAGTGGTATAGCCACTGGTAAACTGCCCATGCTTC  139

seq1  TATAAACAAACCCCGACAGTCAACAAAAACAGAAACATGAAAGTAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAACCCCGACAGTCAACAAAAACAGAAACATGAAAGTAGGAAA  189

seq1  AGGACTTGTTGGGGAGAAAGAGGGTAATGAAGAATGAATCTGACCAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGTTGGGGAGAAAGAGGGTAATGAAGAATGAATCTGACCAAAGT  239

seq1  ACATGTATGAAATTATCAGAAGAGGCTGGAGAGATGGCTCAGCGGTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGAAATTATCAGAAGAGGCTGGAGAGATGGCTCAGCGGTTAAG  289

seq1  AGCACCGAATGTTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGAATGTTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACA  339

seq1  TGGGGCTCACAACCATCTATTATGGGATCTGATGTACTCTTGTGGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCACAACCATCTATTATGGGATCTGATGTACTCTTGTGGTGTGT  389

seq1  GTCTGAAGACAGCCACAGTATACTCATATAAATACTTAAAATAAATCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGACAGCCACAGTATACTCATATAAATACTTAAAATAAATCTAA  439

seq1  AAAAAAAAAAAAAAGGAAAAAGAAATTGTCAGAAGCAGAATGTCCACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGGAAAAAGAAATTGTCAGAAGCAGAATGTCCACAAG  489

seq1  TTCAAAGTCAGCTGGGTACACAAACTGAGCACCAGGCCAGCAAGGATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCAGCTGGGTACACAAACTGAGCACCAGGCCAGCAAGGATACA  539

seq1  GAGATCCTGTCTCAAAAGTCAAAATAAAATTCTATCACTTGGGCTGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTGTCTCAAAAGTCAAAATAAAATTCTATCACTTGGGCTGGAGA  589

seq1  GATGGCTCAGTGGGTAAGAGCATGGATTGCTCTTCCGAAGGTCCTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGTGGGTAAGAGCATGGATTGCTCTTCCGAAGGTCCTGAGTT  639

seq1  CAAATCTCAACAACCACATGGTGGCTCACAACCATCTTTAATGAGATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCAACAACCACATGGTGGCTCACAACCATCTTTAATGAGATTGG  689

seq1  GTGCCCTCTACTGGTGTGTCTGAAGACAGCTAGAGTGTACTTACATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCTACTGGTGTGTCTGAAGACAGCTAGAGTGTACTTACATTTAA  739

seq1  TAAATAAATTCTATCATTTAGGAGATGGACATTAAGGGATTCAGGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATTCTATCATTTAGGAGATGGACATTAAGGGATTCAGGAATTC  789

seq1  AAGGCCAGCCTTGATTTTATATGCCCTAATCAGGGCCCCAATATCACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCCTTGATTTTATATGCCCTAATCAGGGCCCCAATATCACCAA  839

seq1  CCAATCAAGCAAACAAACACAAATGGAAGCATAGGTTTTTTTCTTTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAGCAAACAAACACAAATGGAAGCATAGGTTTTTTTCTTTTATT  889

seq1  CCAAATAAACAGTTGTGTTTCAATTTATCCCAATTGATACCTGATGTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAACAGTTGTGTTTCAATTTATCCCAATTGATACCTGATGTGAA  939

seq1  GCATGTTCTAAAAGATTTTATTCTTTGACAATTTTATACATGCATTTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTCTAAAAGATTTTATTCTTTGACAATTTTATACATGCATTTTTT  989

seq1  TTTTACCTTCAAAGTAGCTACAATGAAATATATTTTGGTTTTAGAAATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTTCAAAGTAGCTACAATGAAATATATTTTGGTTTTAGAAATAA  1039

seq1  GAAAAAAAAAGACTAAGGAAGTGTTTGGTACATTTGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAGACTAAGGAAGTGTTTGGTACATTTGAATTC  1080

seq1: chr3_105629749_105630881
seq2: B6Ng01-297G15.g_68_1202

seq1  GAATTCAGCTGAACTCTTGAATTCGGAGAGAAAGGAGCTATTAAGGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGAACTCTTGAATTCGGAGAGAAAGGAGCTATTAAGGACAA  50

seq1  CTCATGTTGAATTTTGAGGTTATTGACTTTGGGCTCTTGCTTCCTTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTGAATTTTGAGGTTATTGACTTTGGGCTCTTGCTTCCTTCTCA  100

seq1  TGAGGCTGGGATGTTCATGATGTAGAGAGTGCATATAGCTGCTAAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGGATGTTCATGATGTAGAGAGTGCATATAGCTGCTAAGAGCA  150

seq1  ACTACTTTTCTGGAAACTGAAACACAAAGCAGTATGCAAATGAAGCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTTCTGGAAACTGAAACACAAAGCAGTATGCAAATGAAGCCAAG  200

seq1  TATTTGATGGGCTAGAAGAAAGATCCAGGTTTTTGATGGCTCATGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATGGGCTAGAAGAAAGATCCAGGTTTTTGATGGCTCATGCCATC  250

seq1  ACAGTCCAAGGCAACAAGACTTTAGTACCATGGAGATTACATCCTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCAAGGCAACAAGACTTTAGTACCATGGAGATTACATCCTTTTAA  300

seq1  TTAATAAAAATAATAATACCATGCATTTACAAATTAAAAAACATCACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAATAATAATACCATGCATTTACAAATTAAAAAACATCACTTT  350

seq1  CAAATAGCCTTGGGAGTAAATCATGGGCTAGAGATACAGTGCAGTGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCCTTGGGAGTAAATCATGGGCTAGAGATACAGTGCAGTGGTAG  400

seq1  GGGGCGTGCTTAGCATCACAAAGCTCTAGGTTCAAAACTCAGGGGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGCTTAGCATCACAAAGCTCTAGGTTCAAAACTCAGGGGGAACA  450

seq1  AAGAACTTCAACACAAAACCCAAATACCTGACTTATTTTATTTTACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCAACACAAAACCCAAATACCTGACTTATTTTATTTTACTTAA  500

seq1  TTTTTGAGACAGGGCCTCATTCTGTAGCCCTGGCCAACCTGGAATGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGCCTCATTCTGTAGCCCTGGCCAACCTGGAATGCCTT  550

seq1  CTATAGACGAACTCAGAGATCTTCCAGTCTCTATCAATAAAGCACAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACGAACTCAGAGATCTTCCAGTCTCTATCAATAAAGCACAATTC  600

seq1  TAAGTAGCTTTAGGTATAATCATACAAATGAAGAAACAAATCATAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCTTTAGGTATAATCATACAAATGAAGAAACAAATCATAACTAA  650

seq1  AATTAGAAAATGTGTACAGTGGCAAATAACAAATAAAAATATGTTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAATGTGTACAGTGGCAAATAACAAATAAAAATATGTTCCCAG  700

seq1  GTTCTCCTGAAAGAAGCTTCATTAGAAATTTTAAGAAATCAGAAATTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTGAAAGAAGCTTCATTAGAAATTTTAAGAAATCAGAAATTAAG  750

seq1  GAGCTGTAAGTGTTGAGCTCAAGATAAAGGGATAGCAGCACAGAGG-AAG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGCTGTAAGTGTTGAGCTCAAGATAAAGGGATAGCAGCACAGAGGAAAG  800

seq1  GCAGAGGGAGGCAAATGCTAAATAATAGAAGTCAAAATTAAAATAAGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGAGGCAAATGCTAAATAATAGAAGTCAAAATTAAAATAAGTTA  850

seq1  TAATAGAAACTGTCAAGAAAACAGAATTTGGCAAGCAGTAAAGACTAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAACTGTCAAGAAAACAGAATTTGGCAAGCAGTAAAGACTAATA  900

seq1  AAATTGAGATAGATTAAAAGGGAAAATCATTTATATATGCATATACATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGATAGATTAAAAGGGAAAATCATTTATATATGCATATACATAT  950

seq1  ATAACAGAATTTA-TAAAATAAGAAGAATGTCATAAACCTCATACAAGTA  998
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAATTTATTAAAATAAGAAGAATGTCATAAACCTCATACAAGTA  1000

seq1  AATTTGAACAATTACATGACATACCCAGTTCCTTAGAAAAATGAAACTTA  1048
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTGGAACAATTACATGACATACCCAGTTCCTTAGAAAAATG-AACTTA  1049

seq1  CCAAAGTGGACTCAAGAAGAAATA--GAAAATCTAATTTAAGAACTACAG  1096
      | ||  ||||||||||||||||||   |||||||||||| || |||||||
seq2  CAAAGTTGGACTCAAGAAGAAATAAGAAAAATCTAATTT-AGGACTACAG  1098

seq1  CTATTTCTAAG-CAGTTGTACTTGTAACTTAACATCCA  1133
      ||||||||| | |||||||||| || ||||||||||||
seq2  CTATTTCTAGGCCAGTTGTACTGGT-ACTTAACATCCA  1135