BAC Information

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BAC

Clone NameB6Ng01-298E19
Chromosome3 (Build37)
Map Location 118,689,291 - 118,842,236
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298E19.bB6Ng01-298E19.g
ACCGA093444GA093445
length9491,092
definitionB6Ng01-298E19.b B6Ng01-298E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,689,291 - 118,690,021)(118,841,146 - 118,842,236)
sequence
gaattcaataaaaattaaatcatctacaaaagaatataactagaagtcaa
taacaatagataattggagactcttacatggatattgtagtataagctac
tgatcaaagaatataaccaaaatagacatcacaacttcatagagatcgca
gaaagcaaactacaacaggactcattcaaaaaatagtaatagcaagaaga
tttgtaagagtaaaggactatttttaaacaaaaagaaagatatttactaa
gcaacttaaaacatagaataaaataacgattgaaatagaaatacataaaa
tagatatgattaaagcacaaggagccattgaaaatttaaggttgtttcta
caaaggtaaacagaatcaataaattcttaagactaagaaaaatgatagaa
gatttaaaataaaattcccttaaggccctataatcgatgccaaataaaat
ggccattataaacaattatttgcgtaccatttcaccaccattcaaataac
tatataactcctagaaaagcatttatctcttcagattggttgcttattta
aaccaacaaaaagaaggccataacagaccagtaacaaatagtgcccagaa
ccaatttgcttcagggtgaatttagaaaatatttaatgaacagttaatat
ctacagtcttcatggaattttttctttcaaactcatattaggaggccaga
ctgatcctattgcaaaaagctgaatacatttcacacgcacacacacacac
acacacacacacacacacacacacacacacacacttctctgatgagatct
gagagctacattaatctatgggtagaaatatccacatttatgggggcagt
tatactacagctatttgaataattctaataggatcattgctgagctgtga
cttctggaaccatgggtttagggctaggttttctgcagcaggcatgcat

gaattcccttatctgtcgagtactatgaaagcagaatatgcatcaatcaa
aagccatttagaacaccccctagtgatagtgagtgtcaccaacgaggaag
tcatcgagagcatgtcttgtgcatcaaagagtttgtagtgacagagtctg
agctccaacttctctccatagtctagtgctttcctgtccactgattctgt
ttccgtttatatctcagtgtgtgcaaacacagcttgccagtcacggatgt
gaggctatctggcagacacttggcatcacaaacagaaagaagacacttgc
tccccaactgggactgccacactggattaagacaaaataacttttcatca
ttcttgtggcttctaaacagttgttcaaaacaaaattcttcaccatctat
ggattagagtcttaactagggatagggtttgtttttgttttttgtttgtt
tgtttttgtttgtttgttttttgagacagggtttctctgtatagtcctgg
ctgtcctggaactctgtagaccaggctggcttcgaattcagaaattcccc
tgcctttgcctcccaagtgctgggattaaagatgtgcgccaccacaccca
gctagggatagttatttaaatctatcaaatagtacacacctgcatgtact
gatcaccaaaatgatctgtgatgggttttggaatgagtatccaggcctta
aaaattgggacaagactgctctgggtgacacccaggacctgggagacatt
tattttgctttctgaatatgcctgctacagggctcacaggaacttcaggg
gtggctaacttctatttccaagtaaccacaaccactcaaaaaagccttag
ttgcttgaattagtatgaaatgctaaataaactaaaactgaactaacatt
ctggctcttattagtaacaaagattttagttgcttagtccagaggcatct
tacctcaccaaataagagcaatggaaaaaggaaagaaaagtagaagcagc
acaggatgttcattgcccaaaggagttagctaactccagaattaagaaat
ttgttggactgttccctctaagattaaagctctgttccacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118689291_118690021
seq2: B6Ng01-298E19.b_46_776

seq1  GAATTCAATAAAAATTAAATCATCTACAAAAGAATATAACTAGAAGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAAATTAAATCATCTACAAAAGAATATAACTAGAAGTCAA  50

seq1  TAACAATAGATAATTGGAGACTCTTACATGGATATTGTAGTATAAGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAGATAATTGGAGACTCTTACATGGATATTGTAGTATAAGCTAC  100

seq1  TGATCAAAGAATATAACCAAAATAGACATCACAACTTCATAGAGATCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAAGAATATAACCAAAATAGACATCACAACTTCATAGAGATCGCA  150

seq1  GAAAGCAAACTACAACAGGACTCATTCAAAAAATAGTAATAGCAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAACTACAACAGGACTCATTCAAAAAATAGTAATAGCAAGAAGA  200

seq1  TTTGTAAGAGTAAAGGACTATTTTTAAACAAAAAGAAAGATATTTACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAGTAAAGGACTATTTTTAAACAAAAAGAAAGATATTTACTAA  250

seq1  GCAACTTAAAACATAGAATAAAATAACGATTGAAATAGAAATACATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTAAAACATAGAATAAAATAACGATTGAAATAGAAATACATAAAA  300

seq1  TAGATATGATTAAAGCACAAGGAGCCATTGAAAATTTAAGGTTGTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGATTAAAGCACAAGGAGCCATTGAAAATTTAAGGTTGTTTCTA  350

seq1  CAAAGGTAAACAGAATCAATAAATTCTTAAGACTAAGAAAAATGATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTAAACAGAATCAATAAATTCTTAAGACTAAGAAAAATGATAGAA  400

seq1  GATTTAAAATAAAATTCCCTTAAGGCCCTATAATCGATGCCAAATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATAAAATTCCCTTAAGGCCCTATAATCGATGCCAAATAAAAT  450

seq1  GGCCATTATAAACAATTATTTGCGTACCATTTCACCACCATTCAAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTATAAACAATTATTTGCGTACCATTTCACCACCATTCAAATAAC  500

seq1  TATATAACTCCTAGAAAAGCATTTATCTCTTCAGATTGGTTGCTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTCCTAGAAAAGCATTTATCTCTTCAGATTGGTTGCTTATTTA  550

seq1  AACCAACAAAAAGAAGGCCATAACAGACCAGTAACAAATAGTGCCCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAAAAAGAAGGCCATAACAGACCAGTAACAAATAGTGCCCAGAA  600

seq1  CCAATTTGCTTCAGGGTGAATTTAGAAAATATTTAATGAACAGTTAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGCTTCAGGGTGAATTTAGAAAATATTTAATGAACAGTTAATAT  650

seq1  CTACAGTCTTCATGGAATTTTTTCTTTCAAACTCATATTAGGAGGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCTTCATGGAATTTTTTCTTTCAAACTCATATTAGGAGGCCAGA  700

seq1  CTGATCCTATTGCAAAAAGCTGAATACATTT  731
      |||||||||||||||||||||||||||||||
seq2  CTGATCCTATTGCAAAAAGCTGAATACATTT  731


seq1: chr3_118841146_118842236
seq2: B6Ng01-298E19.g_65_1156 (reverse)

seq1  CTGTGGAACAGGCCTTAAATCTTAGAGGAAAACAGTTCCAACAAATTTCT  50
      |||||||||||  ||| |||||||||||  ||||| ||||||||||||||
seq2  CTGTGGAACAGAGCTTTAATCTTAGAGG-GAACAG-TCCAACAAATTTCT  48

seq1  --AATCTGGAGTTTAGCT-ACTCC-TTGGGCAATGAACATCCCTGTGCCT  96
        | ||||||| |||||| ||||| ||||||||||||||| |||||| ||
seq2  TAATTCTGGAG-TTAGCTAACTCCTTTGGGCAATGAACAT-CCTGTG-CT  95

seq1  GCTTCTACCTTTTCTTTTCCTTTTTCATTGCTCTTATTTGGTGAGGT-AG  145
      ||||||| ||||||||| | |||| |||||||||||||||||||||| ||
seq2  GCTTCTA-CTTTTCTTTCCTTTTTCCATTGCTCTTATTTGGTGAGGTAAG  144

seq1  ATGCCTTCTGGACTAAGCAACTAAAATCCTTGTTACTAATAAGAGCCAGA  195
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGCC-TCTGGACTAAGCAACTAAAATCTTTGTTACTAATAAGAGCCAGA  193

seq1  ATGTTAGTTCAG-TTTAGTTTATTTAGCATTTCATACTAATTC-AGCAAC  243
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  ATGTTAGTTCAGTTTTAGTTTATTTAGCATTTCATACTAATTCAAGCAAC  243

seq1  TAAGGCTTTTTTGAGTGGTTGTGGTTACTTGGAAATAGAAGTTAGCCACC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTTTTTTGAGTGGTTGTGGTTACTTGGAAATAGAAGTTAGCCACC  293

seq1  CCTGAAGTTCCTGTGAGCCCTGTAGCAGGCATATTCAG-AAGCAAAATAA  342
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTGAAGTTCCTGTGAGCCCTGTAGCAGGCATATTCAGAAAGCAAAATAA  343

seq1  ATGTCTCCCAGGTCCTGGGTGTCACCCAGAGCAGTCTTGTCCCAATTTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCCAGGTCCTGGGTGTCACCCAGAGCAGTCTTGTCCCAATTTTT  393

seq1  AAGGCCTGGATACTCATTCCAAAACCCATCACAGATCATTTTGGTGATCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGGATACTCATTCCAAAACCCATCACAGATCATTTTGGTGATCA  443

seq1  GTACATGCAGGTGTGTACTATTTGATAGATTTAAATAACTATCCCTAGCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGCAGGTGTGTACTATTTGATAGATTTAAATAACTATCCCTAGCT  493

seq1  GGGTGTGGTGGCGCACATCTTTAATCCCAGCACTTGGGAGGCAAAGGCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGTGGCGCACATCTTTAATCCCAGCACTTGGGAGGCAAAGGCAG  543

seq1  GGGAATTTCTGAATTCGAAGCCAGCCTGGTCTACAGAGTTCCAGGACAGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTCTGAATTCGAAGCCAGCCTGGTCTACAGAGTTCCAGGACAGC  593

seq1  CAGGACTATACAGAGAAACCCTGTCTCAAAAAACAAACAAACAAAAACAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTATACAGAGAAACCCTGTCTCAAAAAACAAACAAACAAAAACAA  643

seq1  ACAAACAAAAAACAAAAACAAACCCTATCCCTAGTTAAGACTCTAATCCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAACAAAAACAAACCCTATCCCTAGTTAAGACTCTAATCCA  693

seq1  TAGATGGTGAAGAATTTTGTTTTGAACAACTGTTTAGAAGCCACAAGAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGTGAAGAATTTTGTTTTGAACAACTGTTTAGAAGCCACAAGAAT  743

seq1  GATGAAAAGTTATTTTGTCTTAATCCAGTGTGGCAGTCCCAGTTGGGGAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAAGTTATTTTGTCTTAATCCAGTGTGGCAGTCCCAGTTGGGGAG  793

seq1  CAAGTGTCTTCTTTCTGTTTGTGATGCCAAGTGTCTGCCAGATAGCCTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTCTTCTTTCTGTTTGTGATGCCAAGTGTCTGCCAGATAGCCTCA  843

seq1  CATCCGTGACTGGCAAGCTGTGTTTGCACACACTGAGATATAAACGGAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTGACTGGCAAGCTGTGTTTGCACACACTGAGATATAAACGGAAA  893

seq1  CAGAATCAGTGGACAGGAAAGCACTAGACTATGGAGAGAAGTTGGAGCTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGTGGACAGGAAAGCACTAGACTATGGAGAGAAGTTGGAGCTC  943

seq1  AGACTCTGTCACTACAAACTCTTTGATGCACAAGACATGCTCTCGATGAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGTCACTACAAACTCTTTGATGCACAAGACATGCTCTCGATGAC  993

seq1  TTCCTCGTTGGTGACACTCACTATCACTAGGGGGTGTTCTAAATGGCTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGTTGGTGACACTCACTATCACTAGGGGGTGTTCTAAATGGCTTT  1043

seq1  TGATTGATGCATATTCTGCTTTCATAGTACTCGACAGATAAGGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATGCATATTCTGCTTTCATAGTACTCGACAGATAAGGGAATTC  1092


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