BAC Information

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BAC

Clone NameB6Ng01-298I09
Chromosome3 (Build37)
Map Location 94,727,425 - 94,902,453
singlet/doubletdoublet
Overlap geneSelenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a
Upstream geneEG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4
Downstream geneVps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298I09.bB6Ng01-298I09.g
ACCGA093608GA093609
length1,0531,111
definitionB6Ng01-298I09.b B6Ng01-298I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,727,425 - 94,728,477)(94,901,334 - 94,902,453)
sequence
gaattcttgttccttctgtcttgaagtcctaagcactgggattgcaggta
agcacccactacaccaggttttttgtattgctgggagttgacactctact
gattgagcggcactcccaggcaaggattcttatattaacgatccgtaatc
taaaatatttgcacaaggaataatgcttagtgttatttatttatttattt
agctaggcacaggagtacatgtctttaacccaagcacacaagaggctgag
ccgggtgaacctccataagttagagcctaccctgggctacacagcaaggt
ccagggttatgtagtgagatcctgtctcaaataaatggataaataaataa
agctctaaggtggaagttgggtgcaatggtatatacctgtaatccatttg
ggagaggtagaggcaggaagatctgtagttcaaggctagcctaaaccatc
tatggggtttgaggacagcctgggcttcacaatatcctgtttcaaaaaga
aataaattcaggacaagaaagatgactcagcagttaagagcagtggctac
tgcatcatgagggctggaattcagatctcagcatccacacagggttgggg
acactacagggtcactggcccagtctcctgcctttgagtgggtttctggg
attgaactcagatcttgagtggaaaacatatttacttgagatatttagcc
agttttcttactcttcctcctcctcctcttcttcttcttccttatcttcc
ttctcctcctttttgtggggagggtattggtgaagctagagccttgcata
tagcactaagctatatccctgattctctttttcacttttacttcaagaca
tggtttcacccaagttgcccaggctagtcttgaattaaacctgtagccca
gactagtcttgaatttgtatcgtttgcctcagcctgtgccaccagaccca
actctttatgggttttagatgagtcttctatagctcagactgtcttcaac
tcgctgcatacctgaagagtgaccttggagctaacccttcttgctctggt
ctc
gaattcataggattcccaggactcaggtagaagcaggagtattgctacaa
gctttgaggcctctctgatctacatagtttcatgccagttagggctgtag
agcaagagaggctctctgccacaaaaagaaagtccaattttggacataga
attggggaagtgcattgtcaatcatcttaaatgcttctggactatggctg
gctaattcaggatgcccaggtattttaagaaaagatttggctggttatca
tggcacaaaccattaataccagcattccttgtagacagaggtaggctgat
ttctttgagaccaggctagtctggtctacatagtgagctccaggacaata
agaactacatagtgagaccctgtcttggggaaagaaaagaaaggaaggaa
ggaaggaagaacagaaaagaaaaccttagggttttgagcaaaatattggt
gtcaagggatacagtgaaatttgtccttgtggtactggaggtaaaggtac
attagaagaaaatagttttttttggttttttaaaggtttatttacttatt
ttatgtacatgagtacactgtaacggtacagacagttgtgagccttcatc
tggttgttgggaattgaatttaggacctctgcttgttctggtaggccttg
ctcgctcagtccctgcaagctctggcccaaagatttatttatgattataa
ataagtacactgtagctgtcttctagctgtactagaagagggtgtcagat
ctcattactggtggctgtgagccaccatgtgattgctgggatttgaactc
aggatcttcagaagagcagtcattgctcttacctgcttagccatctcacc
agcccccagaaatagttattttaatttgcaccttctcatttcctaatttg
ggcagctgaggtttagacagccttactagcacaagggtgttcctggagag
gctgagtggtataaaggatcttggtaacctgtagctcattcctggtattc
tggcatattgttgactctaggtgacaagactggtcagatcaaacggaaca
tgtttacatttattttgtgtatatgtgtacgtggcatgcctgggtgccca
tttatagaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94727425_94728477
seq2: B6Ng01-298I09.b_49_1101

seq1  GAATTCTTGTTCCTTCTGTCTTGAAGTCCTAAGCACTGGGATTGCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTCCTTCTGTCTTGAAGTCCTAAGCACTGGGATTGCAGGTA  50

seq1  AGCACCCACTACACCAGGTTTTTTGTATTGCTGGGAGTTGACACTCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACTACACCAGGTTTTTTGTATTGCTGGGAGTTGACACTCTACT  100

seq1  GATTGAGCGGCACTCCCAGGCAAGGATTCTTATATTAACGATCCGTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGCGGCACTCCCAGGCAAGGATTCTTATATTAACGATCCGTAATC  150

seq1  TAAAATATTTGCACAAGGAATAATGCTTAGTGTTATTTATTTATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTTGCACAAGGAATAATGCTTAGTGTTATTTATTTATTTATTT  200

seq1  AGCTAGGCACAGGAGTACATGTCTTTAACCCAAGCACACAAGAGGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCACAGGAGTACATGTCTTTAACCCAAGCACACAAGAGGCTGAG  250

seq1  CCGGGTGAACCTCCATAAGTTAGAGCCTACCCTGGGCTACACAGCAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGAACCTCCATAAGTTAGAGCCTACCCTGGGCTACACAGCAAGGT  300

seq1  CCAGGGTTATGTAGTGAGATCCTGTCTCAAATAAATGGATAAATAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTATGTAGTGAGATCCTGTCTCAAATAAATGGATAAATAAATAA  350

seq1  AGCTCTAAGGTGGAAGTTGGGTGCAATGGTATATACCTGTAATCCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAAGGTGGAAGTTGGGTGCAATGGTATATACCTGTAATCCATTTG  400

seq1  GGAGAGGTAGAGGCAGGAAGATCTGTAGTTCAAGGCTAGCCTAAACCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTAGAGGCAGGAAGATCTGTAGTTCAAGGCTAGCCTAAACCATC  450

seq1  TATGGGGTTTGAGGACAGCCTGGGCTTCACAATATCCTGTTTCAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGTTTGAGGACAGCCTGGGCTTCACAATATCCTGTTTCAAAAAGA  500

seq1  AATAAATTCAGGACAAGAAAGATGACTCAGCAGTTAAGAGCAGTGGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTCAGGACAAGAAAGATGACTCAGCAGTTAAGAGCAGTGGCTAC  550

seq1  TGCATCATGAGGGCTGGAATTCAGATCTCAGCATCCACACAGGGTTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATGAGGGCTGGAATTCAGATCTCAGCATCCACACAGGGTTGGGG  600

seq1  ACACTACAGGGTCACTGGCCCAGTCTCCTGCCTTTGAGTGGGTTTCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACAGGGTCACTGGCCCAGTCTCCTGCCTTTGAGTGGGTTTCTGGG  650

seq1  ATTGAACTCAGATCTTGAGTGGAAAACATATTTACTTGAGATATTTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTCAGATCTTGAGTGGAAAACATATTTACTTGAGATATTTAGCC  700

seq1  AGTTTTCTTACTCTTCCTCCTCCTCCTCTTCTTCTTCTTCCTTATCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTACTCTTCCTCCTCCTCCTCTTCTTCTTCTTCCTTATCTTCC  750

seq1  TTCTCCTCCTTTTTGTGGGGAGGGTATTGGTGAAGCTAGAGCCTTGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCTTTTTGTGGGGAGGGTATTGGTGAAGCTAGAGCCTTGCATA  800

seq1  TAGCACTAAGCTATATCCCTGATTCTCTTTTTCACTTTTACTTCAAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTAAGCTATATCCCTGATTCTCTTTTTCACTTTTACTTCAAGACA  850

seq1  TGGTTTCACCCAAGTTGCCCAGGCTAGTCTTGAATTAAACCTGTAGCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCACCCAAGTTGCCCAGGCTAGTCTTGAATTAAACCTGTAGCCCA  900

seq1  GACTAGTCTTGAATTTGTAATCGTTTGCCTCAGCCTGTGCCACCAGACCC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GACTAGTCTTGAATTTGT-ATCGTTTGCCTCAGCCTGTGCCACCAGACCC  949

seq1  AACTCTTTATGGGTTTTAGATGAGGTCTTCTATAGCTCAGACTGTCCTCA  1000
      ||||||||||||||||||||||| |||||||||||||||||||||| || 
seq2  AACTCTTTATGGGTTTTAGATGA-GTCTTCTATAGCTCAGACTGTCTTC-  997

seq1  AACTCGCTGCATACCTG-AGAGTGA-CTTTGAGCTAACCC-TCTTGCCTC  1047
      ||||||||||||||||| ||||||| ||| |||||||||| ||||| |||
seq2  AACTCGCTGCATACCTGAAGAGTGACCTTGGAGCTAACCCTTCTTG-CTC  1046

seq1  T-GTCTC  1053
      | |||||
seq2  TGGTCTC  1053

seq1: chr3_94901334_94902453
seq2: B6Ng01-298I09.g_68_1178 (reverse)

seq1  ACCTCTATACATGCGCACCCAGGCATGCCCCACTACCACATATACACAAA  50
      ||||||||| ||| |||||||||||||  ||||   ||||||||||||||
seq2  ACCTCTATAAATGGGCACCCAGGCATG--CCACGTACACATATACACAAA  48

seq1  ATAAATGTAAAAACATTTGTTTCCGTTTGATCT-ACCAGTCTTGTCACCT  99
      ||||||||  ||||||    ||||||||||||| ||||||||||||||||
seq2  ATAAATGT--AAACAT---GTTCCGTTTGATCTGACCAGTCTTGTCACCT  93

seq1  AAGAGTCAACATATTGCCAGGAATACCAAGGAATGAGCTACAGGTTTACC  149
       ||||||||||   ||||| ||||||| |||||||||||||||| |||||
seq2  -AGAGTCAACAATATGCCA-GAATACC-AGGAATGAGCTACAGG-TTACC  139

seq1  AAGATCCTTTAATACCACTCAGCCTCTCCA-GAACACCCTTGTGCTAGTA  198
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AAGATCCTTT-ATACCACTCAGCCTCTCCAGGAACACCCTTGTGCTAGTA  188

seq1  AGGCTGTCTAAACCTCAGCTGCCCAATTTAGGAAATGAGAAGGTGC-AAT  247
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  AGGCTGTCTAAACCTCAGCTGCCCAAATTAGGAAATGAGAAGGTGCAAAT  238

seq1  TAAAATAACTATTTCTGGGGGCTGGTGAGATGGCTAAGCAGGTAAGAGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACTATTTCTGGGGGCTGGTGAGATGGCTAAGCAGGTAAGAGCA  288

seq1  ATGACTGCTCTTCTGAAGATCCTGAGTTCAAATCCCAGCAATCACATGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCTCTTCTGAAGATCCTGAGTTCAAATCCCAGCAATCACATGGT  338

seq1  GGCTCACAGCCACCAGTAATGAGATCTGACACCCTCTTCTAGTACAGCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAGCCACCAGTAATGAGATCTGACACCCTCTTCTAGTACAGCTA  388

seq1  GAAGACAGCTACAGTGTACTTATTTATAATCATAAATAAATCTTTGGGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCTACAGTGTACTTATTTATAATCATAAATAAATCTTTGGGCC  438

seq1  AGAGCTTGCAGGGACTGAGCGAGCAAGGCCTACCAGAACAAGCAGAGGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGCAGGGACTGAGCGAGCAAGGCCTACCAGAACAAGCAGAGGTC  488

seq1  CTAAATTCAATTCCCAACAACCAGATGAAGGCTCACAACTGTCTGTACCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCAATTCCCAACAACCAGATGAAGGCTCACAACTGTCTGTACCG  538

seq1  TTACAGTGTACTCATGTACATAAAATAAGTAAATAAACCTTTAAAAAACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGTACTCATGTACATAAAATAAGTAAATAAACCTTTAAAAAACC  588

seq1  AAAAAAAACTATTTTCTTCTAATGTACCTTTACCTCCAGTACCACAAGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACTATTTTCTTCTAATGTACCTTTACCTCCAGTACCACAAGGA  638

seq1  CAAATTTCACTGTATCCCTTGACACCAATATTTTGCTCAAAACCCTAAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCACTGTATCCCTTGACACCAATATTTTGCTCAAAACCCTAAGG  688

seq1  TTTTCTTTTCTGTTCTTCCTTCCTTCCTTCCTTTCTTTTCTTTCCCCAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTGTTCTTCCTTCCTTCCTTCCTTTCTTTTCTTTCCCCAAG  738

seq1  ACAGGGTCTCACTATGTAGTTCTTATTGTCCTGGAGCTCACTATGTAGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTCACTATGTAGTTCTTATTGTCCTGGAGCTCACTATGTAGAC  788

seq1  CAGACTAGCCTGGTCTCAAAGAAATCAGCCTACCTCTGTCTACAAGGAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGCCTGGTCTCAAAGAAATCAGCCTACCTCTGTCTACAAGGAAT  838

seq1  GCTGGTATTAATGGTTTGTGCCATGATAACCAGCCAAATCTTTTCTTAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTATTAATGGTTTGTGCCATGATAACCAGCCAAATCTTTTCTTAAA  888

seq1  ATACCTGGGCATCCTGAATTAGCCAGCCATAGTCCAGAAGCATTTAAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGGGCATCCTGAATTAGCCAGCCATAGTCCAGAAGCATTTAAGAT  938

seq1  GATTGACAATGCACTTCCCCAATTCTATGTCCAAAATTGGACTTTCTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACAATGCACTTCCCCAATTCTATGTCCAAAATTGGACTTTCTTTT  988

seq1  TGTGGCAGAGAGCCTCTCTTGCTCTACAGCCCTAACTGGCATGAAACTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGAGAGCCTCTCTTGCTCTACAGCCCTAACTGGCATGAAACTAT  1038

seq1  GTAGATCAGAGAGGCCTCAAAGCTTGTAGCAATACTCCTGCTTCTACCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCAGAGAGGCCTCAAAGCTTGTAGCAATACTCCTGCTTCTACCTG  1088

seq1  AGTCCTGGGAATCCTATGAATTC  1120
      |||||||||||||||||||||||
seq2  AGTCCTGGGAATCCTATGAATTC  1111