BAC Information

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BAC

Clone NameB6Ng01-298L09
Chromosome3 (Build37)
Map Location 116,884,156 - 117,093,491
singlet/doubletdoublet
Overlap geneD3Bwg0562e
Upstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298L09.bB6Ng01-298L09.g
ACCGA093747GA093748
length1,101847
definitionB6Ng01-298L09.b B6Ng01-298L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,884,156 - 116,885,023)(117,092,648 - 117,093,491)
sequence
gaattccctactaattagccatataagatgctcaaggagaatcttgtgta
tttcctgttagtttttccaacctgattttcttattttgttagaatggcat
caagcaggcaagtgtgcttgctgctgttggctgctgttgcttctgggcct
tgtcagcagataaaatcatgatttatttgtttatgataatttctatattt
atgcatgtgcataaatatttctccatgtcatctagtctatgttttgctaa
cgtgaatagtgctgtcttccactctaatccacccttgcaaaaatcacctg
gtgtcgtcctactgtttcctaactacttgttccagcagtgaggaaaatgg
gtgtcagcataaacttgctgaattgttcattttcatcatgcatgcatagc
tgtatcagacatgatgactaataccctcacatgaaacaaatttaacacct
agggcacattgcttaaatatgttttctttagtcataagtcttacagactc
atttctaaagatgcagtgaccagcaacctgccaacttcccacttctttca
ttggggttgttccatcctttggagttcagtttgattgcttggttatattt
tgtatttcatcctgtgattccatcctttgaaacaattcctgacatttaca
ttcactctttgttcagtgaaatcgtgtgtgtctttaagagtgttatcacg
tgtccatggtggcagtgtcaggaatagtttcatgcctcacctttgtaatt
cctccctggtcctcaccctttcttccacagcgaccaactacttttcttct
tatgctttctgtcgatttaaaagaaggaattcagttactatgtatagaaa
tatccacaagattttgtgtagatgtgaattttcaaataagttgcttaaat
acccggaagagtgattgtcagtgttataggtggtcatgtttagtaagaaa
ctgatctttactccacaggagctgtgctgtgaaaatgcactggcacggtg
tacccacagtaaacccacacccttattttaacaaacaagtcatttttcat
aggtgatgagccatgcaggctcagactacaggatgtagtttttaattcct
c
gaattcaaggcaacactacattgtaagtctctccctgtgacattttggga
actgtatactctgaataaaatataggtagaaacaccaggattttataaaa
aaaaaaaaaaaaaaagcccctccatttcctgttgatacaagactatagct
tgagtcaggaaccaatctgaggagcaggaatttataatttttcagctttt
tacaagtagaatgataaagtattggtaaagatattggctgcttctcaaat
taataaaaagtcgcctcgatgtttataaaaatcagttgtagtttttggtt
tcgaatatttgcattatattagcacatatctttttttcattttcacaggt
atgctttgtggaaaatatgatcagctatatatcatcgattatccagacct
ttttaatctggaagtctgaaaaaaacatatgcagacgctcttacaatctg
cccacaagcttaaaggaacaaaaaatgcatcttagtcctagatagatttt
ctatcaatttttaaatagtattcagagtaatgatcctgaaaacctatcaa
agaaaatatagttaatgggcagaactagaaaagattatcctgagtgaggt
aacccaaacccattaagtcaaatatgatatgtactcataagtggatgttt
agtcataaagtacaggataaccatgctaatgaaccacaggcctaaaagaa
gctaaaggaacaagggcgacccaagggagggcacttgagtctcatttaga
aggggaactagattagacatcagaatgaatggaagaagcagactgggggg
gatggggcaaggatgagaacaggagagatgaggtgaggggaagattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116884156_116885023
seq2: B6Ng01-298L09.b_287_1147

seq1  GTTTTGCTAACGTGAATAGTGCTGTCTTCCACTCTAATCCACCCTTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTAACGTGAATAGTGCTGTCTTCCACTCTAATCCACCCTTGCAA  50

seq1  AAATCACCTGGTGTCGTCCTACTGTTTCCTAACTACTTGTTCCAGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCTGGTGTCGTCCTACTGTTTCCTAACTACTTGTTCCAGCAGTG  100

seq1  AGGAAAATGGGTGTCAGCATAAACTTGCTGAATTGTTCATTTTCATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGGGTGTCAGCATAAACTTGCTGAATTGTTCATTTTCATCATG  150

seq1  CATGCATAGCTGTATCAGACATGATGACTAATACCCTCACATGAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATAGCTGTATCAGACATGATGACTAATACCCTCACATGAAACAAA  200

seq1  TTTAACACCTAGGGCACATTGCTTAAATATGTTTTCTTTAGTCATAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACACCTAGGGCACATTGCTTAAATATGTTTTCTTTAGTCATAAGTC  250

seq1  TTACAGACTCATTTCTAAAGATGCAGTGACCAGCAACCTGCCAACTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACTCATTTCTAAAGATGCAGTGACCAGCAACCTGCCAACTTCCC  300

seq1  ACTTCTTTCATTGGGGTTGTTCCATCCTTTGGAGTTCAGTTTGATTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTCATTGGGGTTGTTCCATCCTTTGGAGTTCAGTTTGATTGCTT  350

seq1  GGTTATATTTTGTATTTCATCCTGTGATTCCATCCTTTGAAACAATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATTTTGTATTTCATCCTGTGATTCCATCCTTTGAAACAATTCCT  400

seq1  GACATTTACATTCACTCTTTGTTCAGTGAAATCGTGTGTGTCTTTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTACATTCACTCTTTGTTCAGTGAAATCGTGTGTGTCTTTAAGAG  450

seq1  TGTTATCACGTGTCCATGGTGGCAGTGTCAGGAATAGTTTCATGCCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCACGTGTCCATGGTGGCAGTGTCAGGAATAGTTTCATGCCTCAC  500

seq1  CTTTGTAATTCCTCCCTGGTCCTCACCCTTTCTTCCACAGCGACCAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAATTCCTCCCTGGTCCTCACCCTTTCTTCCACAGCGACCAACTA  550

seq1  CTTTTCTTCTTATGCTTTCTGTCGATTTAAAAGAAGGAATTCAGTTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCTTATGCTTTCTGTCGATTTAAAAGAAGGAATTCAGTTACTA  600

seq1  TGTATAGAAATATCCACAAGATTTTGTGTAGATGTGAATTTTCAAATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGAAATATCCACAAGATTTTGTGTAGATGTGAATTTTCAAATAAG  650

seq1  TTGCTTAAATACCCGGAAGAGTGATTGTCAGGTGTTATAGGTGGTCATGT  700
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGCTTAAATACCCGGAAGAGTGATTGTCA-GTGTTATAGGTGGTCATGT  699

seq1  TTAGTAAGAAACTGATCTTTACTCCACAGGAGCTGTGCTGTGAAAATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGAAACTGATCTTTACTCCACAGGAGCTGTGCTGTGAAAATGCA  749

seq1  CTGGCACGGTGTACCCACAGT-AACCCACACCCTTATTTTAACAAAACAG  799
      ||||||||||||||||||||| ||||||||||||||||||||||||  ||
seq2  CTGGCACGGTGTACCCACAGTAAACCCACACCCTTATTTTAACAAACAAG  799

seq1  TCA-TTTTCATAGGGTGGTGGAGGCATGCAGGGCTTCAGACTACA-GATG  847
      ||| |||||||| |||| | ||| ||||||||   |||||||||| ||||
seq2  TCATTTTTCATA-GGTGAT-GAGCCATGCAGG--CTCAGACTACAGGATG  845

seq1  TAGTTTTTATTCTCATTCCTC  868
      |||||||||     |||||||
seq2  TAGTTTTTA-----ATTCCTC  861

seq1: chr3_117092648_117093491
seq2: B6Ng01-298L09.g_72_918 (reverse)

seq1  CAATCTTCCCCTCACCTCATCTCTCCTGTTCTCATCCTTGCCCCATCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCCCCTCACCTCATCTCTCCTGTTCTCATCCTTGCCCCATCCCC  50

seq1  CCCAGTCTGCTTCTTCCATTCATTCCTGATGTCTAATCTAGTTCCCCTTC  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCAGTCTGCTTCTTCCATTCATT-CTGATGTCTAATCTAGTTCCCCTTC  99

seq1  TTAATGAGACTCAAGTGCCCTCCCTTGGGTCGCCCTTGTTCC-TTAGCTT  149
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAATGAGACTCAAGTGCCCTCCCTTGGGTCGCCCTTGTTCCTTTAGCTT  149

seq1  C-TTTAGGCCTGTGGTTCA-TAGCATGGTTATCCTGTACTTTATGACT-A  196
      | ||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  CTTTTAGGCCTGTGGTTCATTAGCATGGTTATCCTGTACTTTATGACTAA  199

seq1  ACATCCACTTATGAGTACATATCATATTTGACTTAATGGGTTTGGGTTAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACTTATGAGTACATATCATATTTGACTTAATGGGTTTGGGTTAC  249

seq1  CTCACTCAGGATAATCTTTTCTAGTTCTGCCCATTAACTATATTTTCTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGGATAATCTTTTCTAGTTCTGCCCATTAACTATATTTTCTTT  299

seq1  GATAGGTTTTCAGGATCATTACTCTGAATACTATTTAAAAATTGATAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTTTTCAGGATCATTACTCTGAATACTATTTAAAAATTGATAGAA  349

seq1  AATCTATCTAGGACTAAGATGCATTTTTTGTTCCTTTAAGCTTGTGGGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCTAGGACTAAGATGCATTTTTTGTTCCTTTAAGCTTGTGGGCA  399

seq1  GATTGTAAGAGCGTCTGCATATGTTTTTTTCAGACTTCCAGATTAAAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAAGAGCGTCTGCATATGTTTTTTTCAGACTTCCAGATTAAAAAG  449

seq1  GTCTGGATAATCGATGATATATAGCTGATCATATTTTCCACAAAGCATAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATAATCGATGATATATAGCTGATCATATTTTCCACAAAGCATAC  499

seq1  CTGTGAAAATGAAAAAAAGATATGTGCTAATATAATGCAAATATTCGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAATGAAAAAAAGATATGTGCTAATATAATGCAAATATTCGAAA  549

seq1  CCAAAAACTACAACTGATTTTTATAAACATCGAGGCGACTTTTTATTAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACTACAACTGATTTTTATAAACATCGAGGCGACTTTTTATTAAT  599

seq1  TTGAGAAGCAGCCAATATCTTTACCAATACTTTATCATTCTACTTGTAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGCAGCCAATATCTTTACCAATACTTTATCATTCTACTTGTAAA  649

seq1  AAGCTGAAAAATTATAAATTCCTGCTCCTCAGATTGGTTCCTGACTCAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAAAATTATAAATTCCTGCTCCTCAGATTGGTTCCTGACTCAAG  699

seq1  CTATAGTCTTGTATCAACAGGAAATGGAGGGGCTTTTTTTTTTTTTTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCTTGTATCAACAGGAAATGGAGGGGCTTTTTTTTTTTTTTTTT  749

seq1  TTATAAAATCCTGGTGTTTCTACCTATATTTTATTCAGAGTATACAGTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATCCTGGTGTTTCTACCTATATTTTATTCAGAGTATACAGTTC  799

seq1  CCAAAATGTCACAGGGAGAGACTTACAATGTAGTGTTGCCTTGAATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTCACAGGGAGAGACTTACAATGTAGTGTTGCCTTGAATTC  847