BAC Information

Click to search

BAC

Clone NameB6Ng01-298O01
Chromosome3 (Build37)
Map Location 88,941,780 - 88,942,251
singlet/doubletsinglet
Overlap genePklr
Upstream geneMef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070
Downstream geneHcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298O01.bB6Ng01-298O01.g
ACCGA093874GA093875
length1,0671,172
definitionB6Ng01-298O01.b B6Ng01-298O01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaccagaccttcaaagaagggctaataccaacattcctcaaact
attccataaaatactaacagaaggaacactgcctaattcattctataaag
ccacaattaagctgatacataaaccacacaaagactgaacaaagaaagag
aacttcagaccaattttgctcatgaatatcaacacaaaatactcaataaa
attctcacaaatcgaatccaagaatacatcaaaaccatcattcaccatga
tcaagtagggttcattccaggaatgcaggaatgggtcactatggaaatcc
atcaatgtaattcactatattaacaacctcaaagaaaaaaaccacatgat
catctcatttgatactgaaaaatactttgacacattccacaaccctttca
tgttaaaagtcttgaaaagatcaggaatctaaggcacatatcaaaacaaa
ttgaaaagaaagaaatcaagatatcattattagcggatgatatgataagt
atatacaagtgaccccaaaaattccaccagagaactcccacagctgataa
acaacttcagcaaaatgtctagatgtaaaattaactcaaacaaatcagta
gccttcttctacactaaggataaatggactgagaaattaattagggaaag
aacacccttcacaatcatcacatataacacaaaaatctttgtgtgactct
aaccaagcaagtgaaagatttgtacgacaagaacttcaagtctctgaaaa
aacaatagaagacctcagaaaatggaaagatctcccatgctcagattcaa
tgcaaaccctatcaaaattccaactcaattcttcagagaggtagaaagag
aaattctcaaactcatctggaataaacaaaatcgtagattagcccgggcc
atggtggcgcacacctttaatcccagcatttgggaggcagaggcaggtgg
atttctgagtttgaggcagctcatctacagtgtgagttccaggacagcca
gagctatatagaagaaacccttattcctcaaacaaacaaacaaacaacaa
caaacaaacgaaaaaac
gaattctcacctgagaaataccgaatggctgagaagcacctgaaaaaaat
gttcagcatccttaatcaccagagaaatgcaaatcaaaacaaccctgaga
ttccatctcacaacaatcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcaaggatgtggagaaagaggaacattcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggttgttcctc
agaaaattggacatagtactaccagaggatccagcaatacctctcctggg
catatatccagaagatgtcccaattggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacaaaaaaatgtggtacatttacacaa
tggagtattactcagctattaaaaaggaatgaatttatgaaattcctagg
caaatggttggacctggagggcatcatcctgagtgaggtaacacaatcac
aaaagaactcaaatgatatgtactcactgataagtggatattagcccaga
aacttaatataccaagatataagatacaatttgcaaaacacatgaaactg
aagaagaatgaagaccaaagtgtgaacactttgccccttcctagaattgg
aaacaatcacccatggaaggagttacagagacaaagtttggagctgagac
aaaaggatggaccatctagagactgccatatccagggatccatcccataa
ttagcctccaaacgatgacaccattgcatacactagcaagcgtttgctga
aaggaccgtgatatagctgtctcttgtgagactaggcaggggcctagcaa
acacagaagtggatgctcacagtacgctattggatggatcacagggcccc
taatgggagagctagagaaagtatccaaagagctaaagagatctgcaacc
tgtaggtgcacacattatgaactaacagtacccggagcctcttgactcta
gctgcatattgtatcaaagaatggccagtccgccatcacttgaaaggaga
aggcctattgaaccttcaacttatatggcccagatacaggggaatgctca
aggacctaaaagtatgtggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88941780_88942251
seq2: B6Ng01-298O01.b_950_1113

seq1  GTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAAGATT  50
      ||||||||| ||||||||||||||| ||||||||||||||||||  ||||
seq2  GTGGCGCACACCTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGTGGATT  50

seq1  TCTGAGTTCGAGGCCAGCATGGTCTACAGAGTGAGTTCCAGGATAGCCAG  100
      |||||||| |||| |||| |  ||||||| ||||||||||||| ||||||
seq2  TCTGAGTTTGAGG-CAGC-TCATCTACAGTGTGAGTTCCAGGACAGCCAG  98

seq1  GGCTATACAG-AGAAACCC---TGTCTCAAAAAACCAAAACCAACCAACC  146
       |||||| || ||||||||   |  |||||| || ||||  ||| |||| 
seq2  AGCTATATAGAAGAAACCCTTATTCCTCAAACAAACAAA--CAAACAAC-  145

seq1  AAACAAACAAACAAAGCAAAAAAAAACCACAAATGCTTGCTTAGTACCTG  196
       ||||||||||| ||  ||||                             
seq2  -AACAAACAAACGAA--AAAAC----------------------------  164

seq1  GAAGACAAGGTTTGGAATTGGGGGTAGCCCAGTAAATAAGGGAAGTCTAG  246
                                                        
seq2  --------------------------------------------------  164

seq1  TGGATGGGACAATAAATACTAAGCAATAATTTATTAAAATGTTCTAATTC  296
                                                        
seq2  --------------------------------------------------  164

seq1  AGAGTCAAGTGTGGTGGCCCAAGCTTTTAATCCCAGCATTTTGAAAGCAG  346
                                                        
seq2  --------------------------------------------------  164

seq1  AGGCAAATGGATCTCTGTGAGTTTGAGGCTAGCCTGGTCTACATAGTGAG  396
                                                        
seq2  --------------------------------------------------  164

seq1  TTCTAGGGCAGCCAGAGCTACATTAAAAACAACAACAACAACAAAAACAA  446
                                                        
seq2  --------------------------------------------------  164

seq1  CCAGCCAACCAAACAAACGAAAAAAC  472
                                
seq2  --------------------------  164