BAC Information

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BAC

Clone NameB6Ng01-298O20
Chromosome3 (Build37)
Map Location 150,658,655 - 150,787,277
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298O20.bB6Ng01-298O20.g
ACCGA093908GA093909
length1,1431,074
definitionB6Ng01-298O20.b B6Ng01-298O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,658,655 - 150,659,809)(150,786,188 - 150,787,277)
sequence
gaattctcctagtgacagccctggtatttctgggatgaagtatcttgttt
tataattaaatctcaacaatgtctgctgatgcctgtcttgatgcttgaaa
gagtctttggcacagtcacattcttagttactttgcaaaacctctaatga
agaaagtgagagagagtgttaatatttaataagcccgctgatggattgct
gtgtctcctaaagtgtccatctctctgactgtttggaaatggacttcatt
aagagttcactgataccttatggttcttgttaacattgctttttgggggg
caccgaagaaaatgcatcgagcttctgcctatgaaactctgaaaccatgt
tcctctacactgttttctgtattcactctttcagaacagtagatatgaat
ctcattttggaaggaaaatattaccagttcattgtgatataaagtagaat
tcatgaaatggtggttttatgactctgagaaataaccagcagattgattt
aatatatggaagctagaactatctttagtttcaagctatgaatatcaaag
ccattaagcatagttttcacatattagttccatttaatatgctttacttg
aaaaggaaaagaagaaaacgtatagttttaaaaaggaaaaaaactgctaa
gaaaaattctgttcatgtaaaagttattataaaatataatttattcaagg
acctctaatatatctatataagacaagagagaaactctcatgcagtgttg
gcagggaaagaaagtgaatgctaaaaaattatctatgttaggttttggga
tttgtatactttgtagtcatttcaggcaataaaatatatccatgcataat
aaaaatgtgcaaatgactaatgattaaaagaagtcaaggaaatatattga
aaacttaacacctgctggaaaccttttaaatattccatgtgcattatctc
aattagtaaccacagcagatgaaacagctgtactaaaactagtattattt
tgaattttatctattcaaatactaaagaaagatgtgtaacaaaccaaagt
gccacaatcaaagaaaaaaaacaaacatacatactacttcagggtattca
ctaaagaatatttctactgcagctctgcaaaacagttctctct

gaattccaaggaaacagcaagtgtaagcgtaggtcattaaggctccagct
aactaggagcagactttccctgttgtcctaggttccaaagaagtttttag
tccagcgaaggtattttatactaggaagtatttcactcctgtacagaatt
tctgcatggaacgggttatagaatgggttcttgccttaagctttttttgt
ttgtttgttttatttgagcaagctgaaatatcacggggttgctcattatt
ttatttctaatttcacagaaaacagggacatgagagagttgggcaggtga
aacggaagcccccgtgatgtttgctttctcagttgaattgcttcacaatg
atcaagagaaacagtgctaacagggcctgccagccttatttgtttgtttg
tttatttatttatttagatggatcttagtatgtaactcaggctggttaca
aactaatgattctccttcatcttcctgattgctgggaatacaggcaggat
cctccacaccagctcatttagcacatctttattgttacattctatttagc
cacatcttttgaacaatcattaccgacagtgttgctgaaagggatgagaa
caaagtggaattgatactgtctccggggattctaatattcctgttgttgt
gtccattgtgtccatgagttcccactttaatttcttgtttgttactagga
tccaactcttggcttttcgtaaatctctgcccaactccctgtgccaatgg
tattttattgttgttgttgttgttgttttttttttttttttttttttctt
tttgagacagggttttctcttgtgttagccctgggtgtcctggaactcac
tttgcagaccagctgggcctccaactcagaagtctgcctgcctctggcca
atggtatttagatcagtgcaaacattaacagctccgagaccctactctct
cttgtaatcctcctttgttatttcatcacttcctgccatctggagactct
ttgattgcaatagaatctcttctctctccttgacaagttgctcagctatt
tctcatcaggatatgcttcactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150658655_150659809
seq2: B6Ng01-298O20.b_48_1190

seq1  GAATTCTCCTAGTGACAGCCCTGGTATTTCTGGGATGAAGTATCTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAGTGACAGCCCTGGTATTTCTGGGATGAAGTATCTTGTTT  50

seq1  TATAATTAAATCTCAACAATGTCTGCTGATGCCTGTCTTGATGCTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAAATCTCAACAATGTCTGCTGATGCCTGTCTTGATGCTTGAAA  100

seq1  GAGTCTTTGGCACAGTCACATTCTTAGTTACTTTGCAAAACCTCTAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTGGCACAGTCACATTCTTAGTTACTTTGCAAAACCTCTAATGA  150

seq1  AGAAAGTGAGAGAGAGTGTTAATATTTAATAAGCCCGCTGATGGATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGAGAGAGAGTGTTAATATTTAATAAGCCCGCTGATGGATTGCT  200

seq1  GTGTCTCCTAAAGTGTCCATCTCTCTGACTGTTTGGAAATGGACTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCTAAAGTGTCCATCTCTCTGACTGTTTGGAAATGGACTTCATT  250

seq1  AAGAGTTCACTGATACCTTATGGTTCTTGTTAACATTGCTTTTTGGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCACTGATACCTTATGGTTCTTGTTAACATTGCTTTTTGGGGGG  300

seq1  CACCGAAGAAAATGCATCGAGCTTCTGCCTATGAAACTCTGAAACCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAAGAAAATGCATCGAGCTTCTGCCTATGAAACTCTGAAACCATGT  350

seq1  TCCTCTACACTGTTTTCTGTATTCACTCTTTCAGAACAGTAGATATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACACTGTTTTCTGTATTCACTCTTTCAGAACAGTAGATATGAAT  400

seq1  CTCATTTTGGAAGGAAAATATTACCAGTTCATTGTGATATAAAGTAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGGAAGGAAAATATTACCAGTTCATTGTGATATAAAGTAGAAT  450

seq1  TCATGAAATGGTGGTTTTATGACTCTGAGAAATAACCAGCAGATTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAATGGTGGTTTTATGACTCTGAGAAATAACCAGCAGATTGATTT  500

seq1  AATATATGGAAGCTAGAACTATCTTTAGTTTCAAGCTATGAATATCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGGAAGCTAGAACTATCTTTAGTTTCAAGCTATGAATATCAAAG  550

seq1  CCATTAAGCATAGTTTTCACATATTAGTTCCATTTAATATGCTTTACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAGCATAGTTTTCACATATTAGTTCCATTTAATATGCTTTACTTG  600

seq1  AAAAGGAAAAGAAGAAAACGTATAGTTTTAAAAAGGAAAAAAACTGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAGAAGAAAACGTATAGTTTTAAAAAGGAAAAAAACTGCTAA  650

seq1  GAAAAATTCTGTTCATGTAAAAGTTATTATAAAATATAATTTATTCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTCTGTTCATGTAAAAGTTATTATAAAATATAATTTATTCAAGG  700

seq1  ACCTCTAATATATCTATATAAGACAAGAGAGAAACTCTCATGCAGTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAATATATCTATATAAGACAAGAGAGAAACTCTCATGCAGTGTTG  750

seq1  GCAGGGAAAGAAGGTGAATGCTAAAAAATTATCTATGTTAGGTTTTGGGA  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAAGAAAGTGAATGCTAAAAAATTATCTATGTTAGGTTTTGGGA  800

seq1  TTTGTATACTTTGTAGTCATTTCAGGCAATAAAATATATCCATGCATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATACTTTGTAGTCATTTCAGGCAATAAAATATATCCATGCATAAT  850

seq1  AAAAATGTGCAAATGACTAATGATTAAAAGAAGTCAAGGAAATATATTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGCAAATGACTAATGATTAAAAGAAGTCAAGGAAATATATTGA  900

seq1  AAACTTAACACCTGCTGGAAACCTTTTAAATATTCCATGTGCATTATCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAACACCTGCTGGAAACCTTTTAAATATTCCATGTGCATTATCTC  950

seq1  AATTAGTAACCACAGCAGATGAAACAGCTGTACTAAAACTAGTATTATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAACCACAGCAGATGAAACAGCTGTACTAAAACTAGTATTATTT  1000

seq1  TGAATTTTATCTATTCAAATACTAAAGAAAGATGTGTAACAAACCAAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTATCTATTCAAATACTAAAGAAAGATGTGTAACAAACCAAAGT  1050

seq1  GCCACAATTCAAAGAAAAAAAAACAAACATACATTACTACCTCAAGGGGT  1100
      ||||||| |||||| |||||||||||||||||| |||||| |||  ||||
seq2  GCCACAA-TCAAAG-AAAAAAAACAAACATACA-TACTACTTCA--GGGT  1095

seq1  ATTTCAACTAAAGAATTAATTTCTACTGCCAAGCTCCTGC-AAACAGTGT  1149
      |||   ||||||||||  |||||||||||  |||| |||| ||||||| |
seq2  ATT--CACTAAAGAAT--ATTTCTACTGC--AGCT-CTGCAAAACAGT-T  1137

seq1  CTCTCT  1155
      ||||||
seq2  CTCTCT  1143


seq1: chr3_150786188_150787277
seq2: B6Ng01-298O20.g_67_1140 (reverse)

seq1  TGAGTG-AGCATATTCCCTTGATTGAGAAATAGCTGAGCAACTGGTCAGA  49
      |||||| |||||||   | ||| |||||||||||||||||||| |||| |
seq2  TGAGTGAAGCATAT---CCTGA-TGAGAAATAGCTGAGCAACTTGTCA-A  45

seq1  GGAGAGGAGAAAGAGGATCTCCTAATTGCAAATTCAAAAGAGGTCTCCAG  99
      ||||| ||| |||||  |||    |||||||  || ||||| ||||||| 
seq2  GGAGA-GAG-AAGAGATTCT----ATTGCAA--TC-AAAGA-GTCTCCA-  84

seq1  GATGGCAGAAGGTGTATGAATTAACAAAAGAAGGATAC-AGAGAGAGTAG  148
      |||||||| | ||| ||||| ||||||| || |  ||| |||||||||| 
seq2  GATGGCAGGAAGTG-ATGAAATAACAAAGGAGGATTACAAGAGAGAGTA-  132

seq1  GGGTCTCTGAAGCTGTTAATGTTTGCACTGATCTAAAATACCATTGGCCA  198
      ||||||| | |||||||||||||||||||||||| |||||||||||||||
seq2  GGGTCTC-GGAGCTGTTAATGTTTGCACTGATCT-AAATACCATTGGCCA  180

seq1  GAGGCAGGCAGACTTCTGAGTTGGAGGCCAGCCTGGTCTGCAAAGTGAGT  248
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  GAGGCAGGCAGACTTCTGAGTTGGAGGCCCAGCTGGTCTGCAAAGTGAGT  230

seq1  TCCAGGACACCCAGGGCT-ACAC-AGAG-AAACCCTGTCTCAAAAAAAAA  295
      |||||||||||||||||| |||| |||| |||||||||||| ||||| ||
seq2  TCCAGGACACCCAGGGCTAACACAAGAGAAAACCCTGTCTC-AAAAAGAA  279

seq1  AAAAAAAAAAAAAAAAAAAACAACAACAACAACAACAATAAAATACCATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAACAACAACAACAACAACAATAAAATACCATT  329

seq1  GGCACAGGGAGTTGGGCAGAGATTTACGAAAAGCCAAGAGTTGGATCCTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGGAGTTGGGCAGAGATTTACGAAAAGCCAAGAGTTGGATCCTA  379

seq1  GTAACAAACAAGAAATTAAAGTGGGAACTCATGGACACAATGGACACAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAACAAGAAATTAAAGTGGGAACTCATGGACACAATGGACACAAC  429

seq1  AACAGGAATATTAGAATCCCCGGAGACAGTATCAATTCCACTTTGTTCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAATATTAGAATCCCCGGAGACAGTATCAATTCCACTTTGTTCTC  479

seq1  ATCCCTTTCAGCAACACTGTCGGTAATGATTGTTCAAAAGATGTGGCTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCAGCAACACTGTCGGTAATGATTGTTCAAAAGATGTGGCTAA  529

seq1  ATAGAATGTAACAATAAAGATGTGCTAAATGAGCTGGTGTGGAGGATCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGTAACAATAAAGATGTGCTAAATGAGCTGGTGTGGAGGATCCT  579

seq1  GCCTGTATTCCCAGCAATCAGGAAGATGAAGGAGAATCATTAGTTTGTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATTCCCAGCAATCAGGAAGATGAAGGAGAATCATTAGTTTGTAA  629

seq1  CCAGCCTGAGTTACATACTAAGATCCATCTAAATAAATAAATAAACAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGAGTTACATACTAAGATCCATCTAAATAAATAAATAAACAAAC  679

seq1  AAACAAATAAGGCTGGCAGGCCCTGTTAGCACTGTTTCTCTTGATCATTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAAGGCTGGCAGGCCCTGTTAGCACTGTTTCTCTTGATCATTG  729

seq1  TGAAGCAATTCAACTGAGAAAGCAAACATCACGGGGGCTTCCGTTTCACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAATTCAACTGAGAAAGCAAACATCACGGGGGCTTCCGTTTCACC  779

seq1  TGCCCAACTCTCTCATGTCCCTGTTTTCTGTGAAATTAGAAATAAAATAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAACTCTCTCATGTCCCTGTTTTCTGTGAAATTAGAAATAAAATAA  829

seq1  TGAGCAACCCCGTGATATTTCAGCTTGCTCAAATAAAACAAACAAACAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACCCCGTGATATTTCAGCTTGCTCAAATAAAACAAACAAACAAA  879

seq1  AAAAGCTTAAGGCAAGAACCCATTCTATAACCCGTTCCATGCAGAAATTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTAAGGCAAGAACCCATTCTATAACCCGTTCCATGCAGAAATTC  929

seq1  TGTACAGGAGTGAAATACTTCCTAGTATAAAATACCTTCGCTGGACTAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGAGTGAAATACTTCCTAGTATAAAATACCTTCGCTGGACTAAA  979

seq1  AACTTCTTTGGAACCTAGGACAACAGGGAAAGTCTGCTCCTAGTTAGCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTGGAACCTAGGACAACAGGGAAAGTCTGCTCCTAGTTAGCTG  1029

seq1  GAGCCTTAATGACCTACGCTTACACTTGCTGTTTCCTTGGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTAATGACCTACGCTTACACTTGCTGTTTCCTTGGAATTC  1074


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