BAC Information

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BAC

Clone NameB6Ng01-299A16
Chromosome3 (Build37)
Map Location 42,684,869 - 42,820,428
singlet/doubletdoublet
Overlap geneLOC100039219
Upstream geneLOC666031, LOC100039204
Downstream geneLOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299A16.bB6Ng01-299A16.g
ACCGA093991GA093992
length1,1611,055
definitionB6Ng01-299A16.b B6Ng01-299A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,819,281 - 42,820,428)(42,684,869 - 42,685,929)
sequence
gaattctcaacctttcaccacaatatcataaatgtgattttcattttggg
agagtgattagaaatctattatcatttcccagggctcggcagatgtgtaa
atattgattatctgtgtccatggatagaaaagtagatagatgatagatag
atagatagatagatagatgatgtagatgacagaaagatcgtgagttacag
aactaagcattgcatgttaataaaacaaaaatgaacaaataaatatattt
gctatatttctggggaaaacattgtcttgagactttaaagaatagagtta
gtcttaagtaatcacaatttatattttggctgattattaattctgaaaac
atggtatctaatatttacttcatacttaacaggcaacaaagacaatgtta
aattgtttcagacatcaatttactattcattgtgaacccttacaaggtta
atggttttctcagtattaaaatgaaagaattgaaagaagcatcacaacag
catatggtaaataaattgcagacacagaaatggcatccagagaatctagt
ttaagcaaagggtctaagcattttctgtgacctgtacttatttcccttgt
agagcaatgaaaggaagggagatattaggatataccctagtaagatttag
ttagcactacttttttcttaaagataaaatgattttgagtgtatatactt
taggcttaaagatacaattctatgtctttacatatctaatacacatttat
atatatatatgtgttgataagatgaaattattaataaaacagaatatgaa
agactgatcctacactatccttaggtatgaacagaattgatgagataaaa
gaaaggaaaacacttctctttattgccagcaagtccattacagcctgctt
tactgtaaaatgaacagccagaaaacactctagcagccgagactaaaagc
ttgcacccactgctgtccttttttttaaataaaatattcagcagcaagat
gaaataagcaccatggaaagaggttttggacaataaaaactagggagatg
gattctgtcacagtgtttcaaagctcccaagaaaagattcctccaccttc
caggccttgccaggtggttgatgatgctggggcaacaggagttggagcat
caatcttcact

gaattccaggaactgaactgcactgactgcacaaactgaataaaactaag
cagaactgtatgaactcaattgaactcaactgcattcaactgaatctcac
taaactgcactacactgaactcatttgaaggacactcactaaactgccct
ccacttctgactcactctgtggtgctcttaagtagccttgctttctcatc
ctcatgagagttgagtacataacctatctctgactcaatctgtcaaatct
ttcccaaaatcatcattttgtctgcttcccatttagaggtccctatcaaa
catgactgtttccttctacaaactaactttaccttctttgtttgtcttta
ttccagacagatcacacaaacttagaaggtccttggatatcatccttgcc
agagcaaacacattgctggattaaaatttttctatattctgggaactcag
atgattattttgaaataaaattataagttggcaattaacaggaaaagttc
ccatcttacaatgtgttgcctgtctctgatacccttttctagcttggcta
atgagccttcattcttttttttaatattttttattattacgtattttcct
catttacatttccaatgctatcccaaaagtcccccataccctcccctcca
ctcccctacccacccactcccaatttttggctctggcgttcccatgttcc
catgttcccatggggcatataaagtttgcaagtccaatgggcctcttttt
ccagtgatggccaactaggccatcttttaatacatatgcagctagaatca
agagctccagggtacgggttagttcataatgttgttgcacctacagggtt
gcagatctctttagctccttgggtactttctctagctcctccattggggg
ccctgtgctccatccaatagctgactgtgagcatctacttatgtgtttgc
taggccccggcctagtctcacagagaaagctatatcagggtccttcagat
atcttgctagtgtatgcaatggtgtcatcgtttgagctattatggggatg
gatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_42819281_42820428
seq2: B6Ng01-299A16.b_45_1205 (reverse)

seq1  AGTG-AGATTGATTGCTCCAACTCCTGT--GCCCAGCATCATC-ACCA-C  45
      |||| ||||||| |||||||||||||||   |||||||||||| |||| |
seq2  AGTGAAGATTGA-TGCTCCAACTCCTGTTGCCCCAGCATCATCAACCACC  49

seq1  TGGC-AGGCCTGG-AGGT-GAG--ATCCTTTCT--GGAGCTTTGAAACAC  88
      |||| |||||||| |||| |||  ||| |||||  |||||||||||||||
seq2  TGGCAAGGCCTGGAAGGTGGAGGAATCTTTTCTTGGGAGCTTTGAAACAC  99

seq1  TGTGACAGAATCCATCT-CCTAGTTTT--ATGTCCAAAACCCTCTTTCCA  135
      ||||||||||||||||| |||||||||   ||||||||| ||||||||||
seq2  TGTGACAGAATCCATCTCCCTAGTTTTTATTGTCCAAAA-CCTCTTTCCA  148

seq1  TGGTTGCTTATTTCATCTTGCTGCTGAATATTTTATTT-AAAAAAAGGAC  184
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGG-TGCTTATTTCATCTTGCTGCTGAATATTTTATTTAAAAAAAAGGAC  197

seq1  AGCAGTGGGTGCAAGCTTTTAGTCTCGGCTGCTAGAGTGTTTTCTGGCTG  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGTGCAAGCTTTTAGTCTCGGCTGCTAGAGTGTTTTCTGGCTG  247

seq1  TTCATTTTACAGTAAAGCAGGCTGTAATGGACTTGCTGGCAATAAAGAGA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTACAGTAAAGCAGGCTGTAATGGACTTGCTGGCAATAAAGAGA  297

seq1  AGTGTTTTCCTTTCTTTTATCTCATCAATTCTGTTCATACCTAAGGATAG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCCTTTCTTTTATCTCATCAATTCTGTTCATACCTAAGGATAG  347

seq1  TGTAGGATCAGTCTTTCATATTCTGTTTTATTAATAATTTCATCTTATCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATCAGTCTTTCATATTCTGTTTTATTAATAATTTCATCTTATCA  397

seq1  ACACATATATATATATAAATGTGTATTAGATATGTAAAGACATAGAATTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATATATATATAAATGTGTATTAGATATGTAAAGACATAGAATTG  447

seq1  TATCTTTAAGCCTAAAGTATATACACTCAAAATCATTTTATCTTTAAGAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAAGCCTAAAGTATATACACTCAAAATCATTTTATCTTTAAGAA  497

seq1  AAAAGTAGTGCTAACTAAATCTTACTAGGGTATATCCTAATATCTCCCTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGTGCTAACTAAATCTTACTAGGGTATATCCTAATATCTCCCTT  547

seq1  CCTTTCATTGCTCTACAAGGGAAATAAGTACAGGTCACAGAAAATGCTTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATTGCTCTACAAGGGAAATAAGTACAGGTCACAGAAAATGCTTA  597

seq1  GACCCTTTGCTTAAACTAGATTCTCTGGATGCCATTTCTGTGTCTGCAAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTGCTTAAACTAGATTCTCTGGATGCCATTTCTGTGTCTGCAAT  647

seq1  TTATTTACCATATGCTGTTGTGATGCTTCTTTCAATTCTTTCATTTTAAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACCATATGCTGTTGTGATGCTTCTTTCAATTCTTTCATTTTAAT  697

seq1  ACTGAGAAAACCATTAACCTTGTAAGGGTTCACAATGAATAGTAAATTGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAAACCATTAACCTTGTAAGGGTTCACAATGAATAGTAAATTGA  747

seq1  TGTCTGAAACAATTTAACATTGTCTTTGTTGCCTGTTAAGTATGAAGTAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAACAATTTAACATTGTCTTTGTTGCCTGTTAAGTATGAAGTAA  797

seq1  ATATTAGATACCATGTTTTCAGAATTAATAATCAGCCAAAATATAAATTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGATACCATGTTTTCAGAATTAATAATCAGCCAAAATATAAATTG  847

seq1  TGATTACTTAAGACTAACTCTATTCTTTAAAGTCTCAAGACAATGTTTTC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTTAAGACTAACTCTATTCTTTAAAGTCTCAAGACAATGTTTTC  897

seq1  CCCAGAAATATAGCAAATATATTTATTTGTTCATTTTTGTTTTATTAACA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATATAGCAAATATATTTATTTGTTCATTTTTGTTTTATTAACA  947

seq1  TGCAATGCTTAGTTCTGTAACTCACGATCTTTCTGTCATCTACATCATCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGCTTAGTTCTGTAACTCACGATCTTTCTGTCATCTACATCATCT  997

seq1  ATCTATCTATCTATCTATCTATCATCTATCTACTTTTCTATCCATGGACA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCATCTATCTACTTTTCTATCCATGGACA  1047

seq1  CAGATAATCAATATTTACACATCTGCCGAGCCCTGGGAAATGATAATAGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAATCAATATTTACACATCTGCCGAGCCCTGGGAAATGATAATAGA  1097

seq1  TTTCTAATCACTCTCCCAAAATGAAAATCACATTTATGATATTGTGGTGA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATCACTCTCCCAAAATGAAAATCACATTTATGATATTGTGGTGA  1147

seq1  AAGGTTGAGAATTC  1148
      ||||||||||||||
seq2  AAGGTTGAGAATTC  1161


seq1: chr3_42684869_42685929
seq2: B6Ng01-299A16.g_66_1120

seq1  GAATTCCAGGAACTGAACTGCACTGACTGCACAAACTGAATAAAACTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAACTGAACTGCACTGACTGCACAAACTGAATAAAACTAAG  50

seq1  CAGAACTGTATGAACTCAATTGAACTCAACTGCATTCAACTGAATCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGTATGAACTCAATTGAACTCAACTGCATTCAACTGAATCTCAC  100

seq1  TAAACTGCACTACACTGAACTCATTTGAAGGACACTCACTAAACTGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCACTACACTGAACTCATTTGAAGGACACTCACTAAACTGCCCT  150

seq1  CCACTTCTGACTCACTCTGTGGTGCTCTTAAGTAGCCTTGCTTTCTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTGACTCACTCTGTGGTGCTCTTAAGTAGCCTTGCTTTCTCATC  200

seq1  CTCATGAGAGTTGAGTACATAACCTATCTCTGACTCAATCTGTCAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGAGTTGAGTACATAACCTATCTCTGACTCAATCTGTCAAATCT  250

seq1  TTCCCAAAATCATCATTTTGTCTGCTTCCCATTTAGAGGTCCCTATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAATCATCATTTTGTCTGCTTCCCATTTAGAGGTCCCTATCAAA  300

seq1  CATGACTGTTTCCTTCTACAAACTAACTTTACCTTCTTTGTTTGTCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTGTTTCCTTCTACAAACTAACTTTACCTTCTTTGTTTGTCTTTA  350

seq1  TTCCAGACAGATCACACAAACTTAGAAGGTCCTTGGATATCATCCTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACAGATCACACAAACTTAGAAGGTCCTTGGATATCATCCTTGCC  400

seq1  AGAGCAAACACATTGCTGGATTAAAATTTTTCTATATTCTGGGAACTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAACACATTGCTGGATTAAAATTTTTCTATATTCTGGGAACTCAG  450

seq1  ATGATTATTTTGAAATAAAATTATAAGTTGGCAATTAACAGGAAAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATTTTGAAATAAAATTATAAGTTGGCAATTAACAGGAAAAGTTC  500

seq1  CCATCTTACAATGTGTTGCCTGTCTCTGATACCCTTTTCTAGCTTGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTACAATGTGTTGCCTGTCTCTGATACCCTTTTCTAGCTTGGCTA  550

seq1  ATGAGCCTTCATTCTTTTTTTTAATATTTTTTATTATTACGTATTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTTCATTCTTTTTTTTAATATTTTTTATTATTACGTATTTTCCT  600

seq1  CATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCTCCA  650

seq1  CTCCCCTACCCACCCACTCCCAATTTTTGGCTCTGGCGTTCCCATGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTACCCACCCACTCCCAATTTTTGGCTCTGGCGTTCCCATGTTCC  700

seq1  CATGTTCCCATGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCCATGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTTTTT  750

seq1  CCAGTGATGGCCAACTAGGCCATCTTTTAATACATATGCAGCTAGAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATGGCCAACTAGGCCATCTTTTAATACATATGCAGCTAGAATCA  800

seq1  AGAGCTCCAGGGTACGGGTTAGTTCATAATGTTGTTGCACCTACAGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCAGGGTACGGGTTAGTTCATAATGTTGTTGCACCTACAGGGTT  850

seq1  GCAGATCTCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGG  900

seq1  CCCTGTGCTCCATCCAATAGCTGACTGTGAGCATCTACTTATGTGTTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTCCATCCAATAGCTGACTGTGAGCATCTACTTATGTGTTTGC  950

seq1  TAGGCCCCGGCCTAGTCTCACAAGAGAAAGCTATATCAGGGTCCTTTCAG  1000
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  TAGGCCCCGGCCTAGTCTCAC-AGAGAAAGCTATATCAGGGTCC-TTCAG  998

seq1  GAATATCTTGCTAGTGTATGCAATGGTGTCATCGTTTGGAGGCTAATTAT  1050
        ||||||||||||||||||||||||||||||||||||   ||| |||||
seq2  --ATATCTTGCTAGTGTATGCAATGGTGTCATCGTTTG--AGCT-ATTAT  1043

seq1  -GGGATGGATCT  1061
       |||||||||||
seq2  GGGGATGGATCT  1055


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