BAC Information

Click to search

BAC

Clone NameB6Ng01-299A24
Chromosome3 (Build37)
Map Location 35,130,127 - 35,240,693
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299A24.bB6Ng01-299A24.g
ACCGA094007GA094008
length1,1601,007
definitionB6Ng01-299A24.b B6Ng01-299A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,130,127 - 35,131,296)(35,239,683 - 35,240,693)
sequence
gaattctggacaatcataggccaaaacctggccaaacttatagctccaca
atgaggccattcataccaagcgtcagaacttctggcagtgaggtttaggt
ctcaccatttactgtttggtcctggtgattatggtatgtagattgagcaa
tagcagcatctggggagacagacgagtacctgcatccaatcataagagcc
tgcatgaaaacctgcacatgacggtactcacttggaatttcatgaatgca
aagctagagacagatctctgaggctctctggtcagcagcttagtccaaat
ggtgagttagagaccctctcaaggggcaaagtagacaatatctctcacac
acacacacaaacacacacacacacacacacacacacacacacacacacac
acacacacacactggtctaagacagtgattctcagtcttcctaatgctgt
gactctttgacattcttcatgccgtgatgacacccccccccccaggcaca
aaattattttcgttgcatgtcataactgcaattttgctactgttatgagt
cataatgtacacggcccacagtcgagaaccactggtctaagagacaggtg
aggagatgagctgagaggaacagcaaggcctgggacaatgtttgtgaatg
gagagtgtgctgtgctctgagctgaaagcaccaagccgcagttggtgttc
agccatgacagtgggcgggcaagtgggcggggtatgcagagggaaggtgc
ctcaaagaggttgcattgacacaggtattagatctgtgggtattagatct
gtggcatattgatgccaacacatgacggcaaacatgagagggttcaagaa
gaactgctttgtgttcctacagaataatgaacttggtctttgcatcagtt
ctggtcccacacagcccgattcccccagacgttggtctcacagctatctg
tacaatccaaacagccggagtttctagattttctttaaatctcgattttg
aaacacataggagtactttaatggcattaacacatttcacttttttgttt
tcacgaagcattgaggactacatttacagaacttttaagaactaacatat
gagcagacttagggcaagcatattgtgaccagaaggcttaaagagagcta
ttgttactga

gaattctcttaccctccgcctggttgaaacaatttgtagaggtgcctcgc
taagggaaggacactggttcaaaaactgttggaaagaaaccggccagctc
cctctctctgcacaggttcacagcttaggaattgaagtttaggacaaaca
cctaattttgaccaaagggacttggttcatttaaaaaaaaatccccctgc
tctctcttctgttcagatctgcaaggttgtttaattgaagtcctgttttg
tgggcgcagatgcacgaggaggttgaatcatcgtcagcctcatttggtgt
tctgatgctgtgtgttcctcattattattcccagaatgtccactggacct
tatgctcctcctcaggaaaactcacaagcattgagcagtcaaagagtcct
ttcttctcctcccgccccctcgcccccatcttcgttgaaactttgccagt
atcagatctcactctgtctgtggcgcattaaaatgaagtgcctccctccc
tgcagatcccccagcctccgctccgctctccagccccacagtttcttcct
aagtgggtagcctcttttgcttgctgcggatgaaccccccccccccagtc
tggctccttagtgctggttttggattggggggctgtgaagggagagaagg
acctggcccgagtgcggcaggagcagctgtggccacttagaagctgaagc
gccggactctgtcccctccccccagactaagggcgcttcacagactcccc
tcctgcaatcccgtgggtcaccgcagaaaccctgaccgctagggctcagc
ttattattgttgttacaattattgggttgttgtttccttctgataacaag
atcttcggagcaggggccccgagagtgaattatgtttttgtaagggtgag
ctgccttccagaaggcagggcctttctggctagcttctcagcctgtactt
cggccactctgccttacccccttgaagccacctcaggagtggtacatgtg
acttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35130127_35131296
seq2: B6Ng01-299A24.b_44_1203

seq1  GAATTCTGGACAATCATAGGCCAAAACCTGGCCAAACTTATAGCTCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGACAATCATAGGCCAAAACCTGGCCAAACTTATAGCTCCACA  50

seq1  ATGAGGCCATTCATACCAAGCGTCAGAACTTCTGGCAGTGAGGTTTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCATTCATACCAAGCGTCAGAACTTCTGGCAGTGAGGTTTAGGT  100

seq1  CTCACCATTTACTGTTTGGTCCTGGTGATTATGGTATGTAGATTGAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATTTACTGTTTGGTCCTGGTGATTATGGTATGTAGATTGAGCAA  150

seq1  TAGCAGCATCTGGGGAGACAGACGAGTACCTGCATCCAATCATAAGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCATCTGGGGAGACAGACGAGTACCTGCATCCAATCATAAGAGCC  200

seq1  TGCATGAAAACCTGCACATGACGGTACTCACTTGGAATTTCATGAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAAAACCTGCACATGACGGTACTCACTTGGAATTTCATGAATGCA  250

seq1  AAGCTAGAGACAGATCTCTGAGGCTCTCTGGTCAGCAGCTTAGTCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAGACAGATCTCTGAGGCTCTCTGGTCAGCAGCTTAGTCCAAAT  300

seq1  GGTGAGTTAGAGACCCTCTCAAGGGGCAAAGTAGACAATATCTCTCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTAGAGACCCTCTCAAGGGGCAAAGTAGACAATATCTCTCACAC  350

seq1  ACACACACAAACACACACACACACACACACACACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAACACACACACACACACACACACACACACACACACACACAC  400

seq1  ACACACACACACTGGTCTAAGACAGTGATTCTCAGTCTTCCTAATGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTGGTCTAAGACAGTGATTCTCAGTCTTCCTAATGCTGT  450

seq1  GACTCTTTGACATTCTTCATGCCGTGATGACACCCCCCCCCCCAGGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTTGACATTCTTCATGCCGTGATGACACCCCCCCCCCCAGGCACA  500

seq1  AAATTATTTTCGTTGCATGTCATAACTGCAATTTTGCTACTGTTATGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTCGTTGCATGTCATAACTGCAATTTTGCTACTGTTATGAGT  550

seq1  CATAATGTACACGGCCCACAGTCGAGAACCACTGGTCTAAGAGACAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTACACGGCCCACAGTCGAGAACCACTGGTCTAAGAGACAGGTG  600

seq1  AGGAGATGAGCTGAGAGGAACAGCAAGGCCTGGGACAATGTTTGTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGAGCTGAGAGGAACAGCAAGGCCTGGGACAATGTTTGTGAATG  650

seq1  GAGAGTGTGCTGTGCTCTGAGCTGAAAGCACCAAGCCGCAGTTGGTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTGCTGTGCTCTGAGCTGAAAGCACCAAGCCGCAGTTGGTGTTC  700

seq1  AGCCATGACAGTGGGCGGGCAAGTGGGCGGGGTATGCAGAGGGAAGGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGACAGTGGGCGGGCAAGTGGGCGGGGTATGCAGAGGGAAGGTGC  750

seq1  CTCAAAGAGGTTGCATTGACACAGGTATTAGATCTGTGGGTATTAGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAGGTTGCATTGACACAGGTATTAGATCTGTGGGTATTAGATCT  800

seq1  GTGGCATATTGATGCCAACACATGACGGCAAACATGAGA-GGTTCAAGAA  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGGCATATTGATGCCAACACATGACGGCAAACATGAGAGGGTTCAAGAA  850

seq1  GAACTGCTTTGTGTTCCTACAGAATAATGAACTTGGTCTTTGCATCAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTTTGTGTTCCTACAGAATAATGAACTTGGTCTTTGCATCAGTT  900

seq1  CTGGTCCCACACAGCCCGATTCCCCCAGACGTTGGTCTCACAGCTATCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCCACACAGCCCGATTCCCCCAGACGTTGGTCTCACAGCTATCTG  950

seq1  TACAATCCAAACAGCCCGAGTTTCTAGATTTTTCTTTAAATCTCGATTTT  999
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TACAATCCAAACAGCCGGAGTTTCTAGA-TTTTCTTTAAATCTCGATTTT  999

seq1  GAAACACATAAGAAGTTACTTAAATGGCATTTAACACAATTTCACCTTTT  1049
      |||||||||| ||   ||||| ||||||| ||||||| |||||| |||||
seq2  GAAACACATAGGA--GTACTTTAATGGCA-TTAACAC-ATTTCA-CTTTT  1044

seq1  TTGTTTTCACGAAGCATTTGAGGACTTACAATTTTACAGAA-TTTTAAGA  1098
      |||||||||||||||| |||||||| ||||  ||||||||| ||||||| 
seq2  TTGTTTTCACGAAGCA-TTGAGGAC-TACA--TTTACAGAACTTTTAAG-  1089

seq1  AACTAACCATATTGAAGCAGAACTAGGGGCAGGCATTATTGTGCCCAG-A  1147
      |||||| |||||   ||||| |||  ||||| ||| ||||||| |||| |
seq2  AACTAA-CATAT--GAGCAG-ACTTAGGGCAAGCA-TATTGTGACCAGAA  1134

seq1  GGCT---AGAGAGCTATTGTTTCTGA  1170
      ||||   |||||||||||||| ||||
seq2  GGCTTAAAGAGAGCTATTGTTACTGA  1160


seq1: chr3_35239683_35240693
seq2: B6Ng01-299A24.g_63_1069 (reverse)

seq1  CAAAAGTTCCACATGTACAACCTCCTGAGTGGCCTTCAAGGGGGTAAGGG  50
      |||||||  ||||||||| | ||||||||  | |||||||||||||| ||
seq2  CAAAAGT--CACATGTACCA-CTCCTGAGGTGGCTTCAAGGGGGTAA-GG  46

seq1  CAGGAGGTGGGCGGAGGACAGGCTGAG-AGCTAGGCAGAAA-GCCCTG-C  97
      |||   |||| || || |||||||||| |||||| |||||| |||||| |
seq2  CAG--AGTGGCCGAAGTACAGGCTGAGAAGCTAGCCAGAAAGGCCCTGCC  94

seq1  TTCTGGAAAGGCAGCTCA-CCTTACAAAAACATAATTCACTCTCGGGGCC  146
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGG-AAGGCAGCTCACCCTTACAAAAACATAATTCACTCTCGGGGCC  143

seq1  CCTGCTCCGAAGATCTTGTTATCAGAAGGAAACAACAACCCAATAATTGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCGAAGATCTTGTTATCAGAAGGAAACAACAACCCAATAATTGT  193

seq1  AACAACAATAATAAGCTGAGCCCTAGCGGTCAGGGTTTCTGCGGTGACCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATAATAAGCTGAGCCCTAGCGGTCAGGGTTTCTGCGGTGACCC  243

seq1  ACGGGATTGCAGGAGGGGAGTCTGTGAAGCGCCCTTAGTCTGGGGGGAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATTGCAGGAGGGGAGTCTGTGAAGCGCCCTTAGTCTGGGGGGAGG  293

seq1  GGACAGAGTCCGGCGCTTCAGCTTCTAAGTGGCCACAGCTGCTCCTGCCG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGTCCGGCGCTTCAGCTTCTAAGTGGCCACAGCTGCTCCTGCCG  343

seq1  CACTCGGGCCAGGTCCTTCTCTCCCTTCACAGCCCCCCAATCCAAAACCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGGCCAGGTCCTTCTCTCCCTTCACAGCCCCCCAATCCAAAACCA  393

seq1  GCACTAAGGAGCCAGACTGGGGGGGGGGGGGTTCATCCGCAGCAAGCAAA  446
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCACTAAGGAGCCAGACT-GGGGGGGGGGGGTTCATCCGCAGCAAGCAAA  442

seq1  AGAGGCTACCCACTTAGGAAGAAACTGTGGGGCTGGAGAGCGGAGCGGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTACCCACTTAGGAAGAAACTGTGGGGCTGGAGAGCGGAGCGGAG  492

seq1  GCTGGGGGATCTGCAGGGAGGGAGGCACTTCATTTTAATGCGCCACAGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGGATCTGCAGGGAGGGAGGCACTTCATTTTAATGCGCCACAGAC  542

seq1  AGAGTGAGATCTGATACTGGCAAAGTTTCAACGAAGATGGGGGCGAGGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGATCTGATACTGGCAAAGTTTCAACGAAGATGGGGGCGAGGGG  592

seq1  GCGGGAGGAGAAGAAAGGACTCTTTGACTGCTCAATGCTTGTGAGTTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGGAGAAGAAAGGACTCTTTGACTGCTCAATGCTTGTGAGTTTTC  642

seq1  CTGAGGAGGAGCATAAGGTCCAGTGGACATTCTGGGAATAATAATGAGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGGAGCATAAGGTCCAGTGGACATTCTGGGAATAATAATGAGGA  692

seq1  ACACACAGCATCAGAACACCAAATGAGGCTGACGATGATTCAACCTCCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGCATCAGAACACCAAATGAGGCTGACGATGATTCAACCTCCTC  742

seq1  GTGCATCTGCGCCCACAAAACAGGACTTCAATTAAACAACCTTGCAGATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTGCGCCCACAAAACAGGACTTCAATTAAACAACCTTGCAGATC  792

seq1  TGAACAGAAGAGAGAGCAGGGGGATTTTTTTTTAAATGAACCAAGTCCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAAGAGAGAGCAGGGGGATTTTTTTTTAAATGAACCAAGTCCCT  842

seq1  TTGGTCAAAATTAGGTGTTTGTCCTAAACTTCAATTCCTAAGCTGTGAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAAAATTAGGTGTTTGTCCTAAACTTCAATTCCTAAGCTGTGAAC  892

seq1  CTGTGCAGAGAGAGGGAGCTGGCCGGTTTCTTTCCAACAGTTTTTGAACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAGAGAGGGAGCTGGCCGGTTTCTTTCCAACAGTTTTTGAACC  942

seq1  AGTGTCCTTCCCTTAGCGAGGCACCTCTACAAATTGTTTCAACCAGGCGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTTCCCTTAGCGAGGCACCTCTACAAATTGTTTCAACCAGGCGG  992

seq1  AGGGTAAGAGAATTC  1011
      |||||||||||||||
seq2  AGGGTAAGAGAATTC  1007


| Home | SequenceCutter | Blast | Download |