BAC Information

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BAC

Clone NameB6Ng01-299G22
Chromosome3 (Build37)
Map Location 121,842,316 - 121,951,875
singlet/doubletdoublet
Overlap geneAbca4, EG668788, LOC626807, LOC100043724, Gclm
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29
Downstream genePpia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299G22.bB6Ng01-299G22.g
ACCGA094274GA094275
length1,1851,065
definitionB6Ng01-299G22.b B6Ng01-299G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,842,316 - 121,843,485)(121,950,806 - 121,951,875)
sequence
gaattcaaaaaaataatgtggtcatgaactatgtaggactagaggcagct
caaatgatggcaatcctaacctaaccgtggctgagccaggatgcaggttg
cctctcagctgtgtgaaagttaacatgggtggctatgaagttcttttctg
ttgtcctgagccccacaggtctccaactctccaggtagagtgtgggaaat
gatcttgttaggcagtagagtagatggaatgaagaaaaagacgcagcaga
tggttcaggtgtgtgcagggaagacttccagagtgactgcataacccttc
cacttagctgtcacagacagcacccatcatcaacagagactgggggctgt
cacctgatttctgcatagtctgtgcccgtggggaaagccacaacaatagc
atcaggaagaagacataatgagacaactaaatttaccatagcatgtatca
cagctgctggctcataaggaaggggtcctgggtcaatcctgctctttata
ttgctcaggcaatagattgtccctttgggtgacagctacattgccacatt
gcagatatccctgactccctaggatctgggctgagaaaggaaaccatcag
acctccatgcacaggaattcatttcctaaatgaattctaacctcacagct
gcctgtctcacttagaaacttaccttcagagcacctttggcctatggtcc
ttaggaagatgctcgaagtcctagaagaggcagagcaagtctgcaagtgt
atgtcacccctgcctttcctcattagcagtcacatctcctgagcaaaact
gaatgtcccatctctgtaatagacacctctcctgtacaaaaaagtgcatg
cacatgcttatacacatatgtacacatagatatacatgtgttcgcatcca
ctcaccctcgttagcaccttcccttcttagccaggagtaagagcagaagg
aaagagctagtccagaaggaggtgaaaggaaaagtgagagaggcaatgac
tctgagagtcagagcttacagatgtccttcctgctccaacattttttcaa
cgggttctgatatggaatgcccccccaacctgaacttctactctacacca
agaagaataaagcggggcaatgttatgttctgatagacgttttaagaaac
caattccttcacaaactttctctaaggtcatctgc
gaattcagagactgtggcactggggcagggcctgcacaggttcaggtcag
gttcctagcactgagaaaggaaagaagtctaggtgtcccaccccaacctt
agagttaatttgcaattaatgccaactggtaagggggtaaaatcaatttt
ctccaggagtgtcactgggtatatcacgcatactccagggcaacacaaaa
caaactccatggcttttctcgagatttttttttttttttttgctttttgc
tttgtctagctatgttttgtcttactggtcttctgttttttcattttgaa
gttttgtgacattgtggggttttgtttttgtttttgaaagaaagagaaca
taaaattcaatggcgagtgtctgggagaaatcacagaagggaaactataa
tcaaaacacatatacaaatatataaaatacatacataaaaatatataaat
gtataaaaatgaaatagaagtaaattttaggggctagaaaggtggctcag
tggttaagaagactgcctgctctcttggaggtctccagttcaattcccac
cgccccacaacagtctataactccaatacctaatattctcacagacgtgc
atgcagacaaaacaccaatgcacgtaaaataaaaggaaataaaaaataaa
atcaaaataaataaatttaaaaaatcaaaaaataaagaatctataagaaa
aaaatgatcaggcctttgggaaaaaggtggttatttttgttttgttttcc
agtttccttaatctcttcaagtgaattgaactgttttaaatagcacatcc
cactttgatctctgggtgtagaaaattctttctgcgggccgaggatacgg
cccagggatgaagtgcttgtcagacaagcgcgaggacctgaactcagatc
ccagcactccagagaaaagccaggcacagtggttagaggcagtagcagta
ctgggcctgagggtacagacaccacagctagtctagccatccttgagctt
ctggttcagtgaagcaccctatctaagaaatattcagactcaacctctgt
ctctgagcctcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121842316_121843485
seq2: B6Ng01-299G22.b_49_1233

seq1  GAATTCAAAAAAATAATGTGGTCATGAACTATGTAGGACTAGAGGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAAATAATGTGGTCATGAACTATGTAGGACTAGAGGCAGCT  50

seq1  CAAATGATGGCAATCCTAACCTAACCGTGGCTGAGCCAGGATGCAGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATGGCAATCCTAACCTAACCGTGGCTGAGCCAGGATGCAGGTTG  100

seq1  CCTCTCAGCTGTGTGAAAGTTAACATGGGTGGCTATGAAGTTCTTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCTGTGTGAAAGTTAACATGGGTGGCTATGAAGTTCTTTTCTG  150

seq1  TTGTCCTGAGCCCCACAGGTCTCCAACTCTCCAGGTAGAGTGTGGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGAGCCCCACAGGTCTCCAACTCTCCAGGTAGAGTGTGGGAAAT  200

seq1  GATCTTGTTAGGCAGTAGAGTAGATGGAATGAAGAAAAAGACGCAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGTTAGGCAGTAGAGTAGATGGAATGAAGAAAAAGACGCAGCAGA  250

seq1  TGGTTCAGGTGTGTGCAGGGAAGACTTCCAGAGTGACTGCATAACCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGGTGTGTGCAGGGAAGACTTCCAGAGTGACTGCATAACCCTTC  300

seq1  CACTTAGCTGTCACAGACAGCACCCATCATCAACAGAGACTGGGGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCTGTCACAGACAGCACCCATCATCAACAGAGACTGGGGGCTGT  350

seq1  CACCTGATTTCTGCATAGTCTGTGCCCGTGGGGAAAGCCACAACAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATTTCTGCATAGTCTGTGCCCGTGGGGAAAGCCACAACAATAGC  400

seq1  ATCAGGAAGAAGACATAATGAGACAACTAAATTTACCATAGCATGTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAGAAGACATAATGAGACAACTAAATTTACCATAGCATGTATCA  450

seq1  CAGCTGCTGGCTCATAAGGAAGGGGTCCTGGGTCAATCCTGCTCTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGGCTCATAAGGAAGGGGTCCTGGGTCAATCCTGCTCTTTATA  500

seq1  TTGCTCAGGCAATAGATTGTCCCTTTGGGTGACAGCTACATTGCCACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGGCAATAGATTGTCCCTTTGGGTGACAGCTACATTGCCACATT  550

seq1  GCAGATATCCCTGACTCCCTAGGATCTGGGCTGAGAAAGGAAACCATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATATCCCTGACTCCCTAGGATCTGGGCTGAGAAAGGAAACCATCAG  600

seq1  ACCTCCATGCACAGGAATTCATTTCCTAAATGAATTCTAACCTCACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATGCACAGGAATTCATTTCCTAAATGAATTCTAACCTCACAGCT  650

seq1  GCCTGTCTCACTTAGAAACTTACCTTCAGAGCACCTTTGGCCTATGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTCACTTAGAAACTTACCTTCAGAGCACCTTTGGCCTATGGTCC  700

seq1  TTAGGAAGATGCTCGAAGTCCTAGAAGAGGCAGAGCAAGTCTGCAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGATGCTCGAAGTCCTAGAAGAGGCAGAGCAAGTCTGCAAGTGT  750

seq1  ATGTCACCCCTGCCTTTCCTCATTAGCAGTCACATCTCCTGAGCAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCCCTGCCTTTCCTCATTAGCAGTCACATCTCCTGAGCAAAACT  800

seq1  GAATGTCCCATCTCTGTAATAGACACCTCTCCTGTACAAAAAAGTGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCCATCTCTGTAATAGACACCTCTCCTGTACAAAAAAGTGCATG  850

seq1  CACATGCTTATACACATATGTACACATAGATATACATGTGTTCGCATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTTATACACATATGTACACATAGATATACATGTGTTCGCATCCA  900

seq1  CTCACCCTCGTTTAGCACCTTCCC-TCTTAGCCAGGAGTAAGAGCAGAAG  949
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CTCACCCTCG-TTAGCACCTTCCCTTCTTAGCCAGGAGTAAGAGCAGAAG  949

seq1  GAAAGAGCTAGTCCAG-AGGAGGTG-AAGGAAAAGTGAGAGAGGCAATGA  997
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  GAAAGAGCTAGTCCAGAAGGAGGTGAAAGGAAAAGTGAGAGAGGCAATGA  999

seq1  CTCTGAGAGTCAGAGC-TACAGATGTCCCTTCCTGCTCCAACATTTCTTC  1046
      |||||||||||||||| ||||||||| ||||||||||||||||||| |||
seq2  CTCTGAGAGTCAGAGCTTACAGATGT-CCTTCCTGCTCCAACATTTTTTC  1048

seq1  AACGGGGTCTTGATATGG-ATGCGCCCCAACCCTG-ACTTCTACTCTACA  1094
      |||||| || |||||||| |||| |||| | |||| ||||||||||||||
seq2  AACGGGTTC-TGATATGGAATGCCCCCCCAACCTGAACTTCTACTCTACA  1097

seq1  CAGAG----ATAAAGCGGG--AATGTTATG-TCTGGTAGACGTTTT-AGA  1136
      |  ||    ||||||||||  ||||||||| |||| |||||||||| |||
seq2  CCAAGAAGAATAAAGCGGGGCAATGTTATGTTCTGATAGACGTTTTAAGA  1147

seq1  AAACAATTCC-TCACAAACTTTCTC--AGG-CATCTGC  1170
      || ||||||| ||||||||||||||  ||| |||||||
seq2  AACCAATTCCTTCACAAACTTTCTCTAAGGTCATCTGC  1185

seq1: chr3_121950806_121951875
seq2: B6Ng01-299G22.g_70_1134 (reverse)

seq1  GTGTGA-GCTCAGAGGCCAGAGGTTGATGTCTGATATTTTCCTTTAGATA  49
      |||||| ||||||| | |||||||||| ||||||   ||||  |||||||
seq2  GTGTGAGGCTCAGA-GACAGAGGTTGA-GTCTGAATATTTC--TTAGATA  46

seq1  GGGTGCCTCACTGAACCCAGAGCTCAGGGATTGGCTAGACTAGCCTGT-G  98
      |||||| ||||||||||   |||||| ||| |||||||||||| |||| |
seq2  GGGTGCTTCACTGAACCAGAAGCTCAAGGA-TGGCTAGACTAG-CTGTGG  94

seq1  TGTCTGTTCCCTCAGGCCCAGTACTGCCTACTGCCTCCTACCACTGTGCC  148
      ||||||| |||||||||||||||||| ||||||||||  |||||||||||
seq2  TGTCTGTACCCTCAGGCCCAGTACTG-CTACTGCCTCTAACCACTGTGCC  143

seq1  TGGCTTTTCTCTGG-GTGCTGGGATCTGAGTTCAGGTCCTCGCGCTTGTC  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTCTCTGGAGTGCTGGGATCTGAGTTCAGGTCCTCGCGCTTGTC  193

seq1  TGACAAGCACTTCATCCCCTGGGCCGTATCCTCGGCCCGCAGAAAGAATT  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGACAAGCACTTCAT-CCCTGGGCCGTATCCTCGGCCCGCAGAAAGAATT  242

seq1  TTCTAACAACCAGAGATCAAAGTGGGATGTGCTATTTAAAACAGTTCAAT  297
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCT-ACACCCAGAGATCAAAGTGGGATGTGCTATTTAAAACAGTTCAAT  291

seq1  TCACTTGAAGAGATTAAGGAAACTGGAAAACAAAACAAAAATAACCACCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAAGAGATTAAGGAAACTGGAAAACAAAACAAAAATAACCACCT  341

seq1  TTTTCCCAAAGGCCTGATCATTTTTTTCTTATAGATTC-TTATTTTTTGA  396
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTCCCAAAGGCCTGATCATTTTTTTCTTATAGATTCTTTATTTTTTGA  391

seq1  TTTTTTAAATTTATTTATTTTGATTTTATTTTTTATTTCCTTTTATTTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTTATTTATTTTGATTTTATTTTTTATTTCCTTTTATTTTA  441

seq1  CGTGCATTGGTGTTTTGTCTGCATGCACGTCTGTGAGAATATTAGGTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATTGGTGTTTTGTCTGCATGCACGTCTGTGAGAATATTAGGTATT  491

seq1  GGAGTTATAGACTGTTGTGGGGCGGTGGGAATTGAACTGGAGACCTCCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATAGACTGTTGTGGGGCGGTGGGAATTGAACTGGAGACCTCCAA  541

seq1  GAGAGCAGGCAGTCTTCTTAACCACTGAGCCACCTTTCTAGCCCCTAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGCAGTCTTCTTAACCACTGAGCCACCTTTCTAGCCCCTAAAA  591

seq1  TTTACTTCTATTTCATTTTTATACATTTATATATTTTTATGTATGTATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTATTTCATTTTTATACATTTATATATTTTTATGTATGTATTT  641

seq1  TATATATTTGTATATGTGTTTTGATTATAGTTTCCCTTCTGTGATTTCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTGTATATGTGTTTTGATTATAGTTTCCCTTCTGTGATTTCTC  691

seq1  CCAGACACTCGCCATTGAATTTTATGTTCTCTTTCTTTCAAAAACAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACTCGCCATTGAATTTTATGTTCTCTTTCTTTCAAAAACAAAAA  741

seq1  CAAAACCCCACAATGTCACAAAACTTCAAAATGAAAAAACAGAAGACCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCCACAATGTCACAAAACTTCAAAATGAAAAAACAGAAGACCAG  791

seq1  TAAGACAAAACATAGCTAGACAAAGCAAAAAGCAAAAAAAAAAAAAAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAACATAGCTAGACAAAGCAAAAAGCAAAAAAAAAAAAAAAAA  841

seq1  TCTCGAGAAAAGCCATGGAGTTTGTTTTGTGTTGCCCTGGAGTATGCGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAGAAAAGCCATGGAGTTTGTTTTGTGTTGCCCTGGAGTATGCGTG  891

seq1  ATATACCCAGTGACACTCCTGGAGAAAATTGATTTTACCCCCTTACCAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCCAGTGACACTCCTGGAGAAAATTGATTTTACCCCCTTACCAGT  941

seq1  TGGCATTAATTGCAAATTAACTCTAAGGTTGGGGTGGGACACCTAGACTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAATTGCAAATTAACTCTAAGGTTGGGGTGGGACACCTAGACTT  991

seq1  CTTTCCTTTCTCAGTGCTAGGAACCTGACCTGAACCTGTGCAGGCCCTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCTCAGTGCTAGGAACCTGACCTGAACCTGTGCAGGCCCTGC  1041

seq1  CCCAGTGCCACAGTCTCTGAATTC  1070
      ||||||||||||||||||||||||
seq2  CCCAGTGCCACAGTCTCTGAATTC  1065