BAC Information

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BAC

Clone NameB6Ng01-299H16
Chromosome3 (Build37)
Map Location 126,444,641 - 126,586,592
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneUgt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299H16.bB6Ng01-299H16.g
ACCGA094308GA094309
length9701,091
definitionB6Ng01-299H16.b B6Ng01-299H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,586,041 - 126,586,592)(126,444,641 - 126,445,729)
sequence
gaattcctacaaaggcctggggaaggtgatggggatccataaaaataaaa
taaggctagtgtcagttggctcagcaggttaagtgctgccacacagcctg
atgaccaagttgaatctctaaaatctacagaaaaagctggatgtgttggt
acatatctgtaacccctgcactcttgtgaaaagatgggaggtagagacag
gagaatcaccacaaagctcatagccagctagtcagaagtacatatcacaa
cagtagaaacaacagaagagactcagcctccagctgaagagggagcactt
gtaagggtccatgattcacaaaagaatgatactcaaaaagtatgtaagag
caaagagagctttattcagtagaagtctggcatgttggggtatgcaattt
accaggatggagaccctcgggtgagctcgtaggtacaatttaaagcacat
taggggaatttcagggaaggataagtgacttttatcttaattggttggct
ctatatctagggacatttcagagccattgctgggggtagggggtcaggtt
gggactagaaactgctgctgaggaagtctggaaactgttgcggacccatt
gctcttgcttcaggccaggtggtggggcagctacttataatgaggcaatt
tctggttggctgcctgaggcctccaatttttctagttactgacttgccag
tacttgcccagttcttggaaacagagatctaggcatagtcttctgaactg
ccaatttgaatcctgtcatggagtcagcctgtctcagtcctctcacactc
tcacactgacgccaaaaagtgattttctgatctccatgcacctgtatatg
catgtacagggtgcacacacaaacagaaacagaaacacacacacacacac
acgcacgcacgcacgcacgcacgcacgcacgcatgcacgcacgcacgcac
acatgtgcatgcacgggcct
gaattcaataatttttgctcacatggaagtataagtgagtgctattgaat
agcgcttgttgagataatgtatcgtggggaatttatttagtttttgtaat
agaattcctggccttaataaaagctagcatttgctggatagttaataatg
actactctttcccaaactattataattgtcgattttgttgtttataataa
ctctataatgttggggtaattctgatctatgttggagagcttgagacaga
agaagtggcttatatgcctgaggtcaccttagaagtagttagacttactt
gagtttgacacacatgtgctgtgggccaccacagtgctgccatttctttt
gcttttctttgtttgttttgttttgttaccaatggacattccacttcaat
ttcatccttatgtttggttcacatgcaaatgttcaaggaagttttctgta
accacttgatgttgttacagaccttcagtcattagtactggagaaaactt
atttattgaattaggtggggaaccctaggttattcaaacaaaatccagaa
aacttatttattgaattaggtggggaaccctaggttatccaaacaaaatc
caactgactcaccctaatcttggggaaagaagagataaactgagcctcac
aacctaggctgttgcgttaaaatatatatattctcttaagtaattgaaat
attcataaatatacttgatctcaacacccaatgataggctactgaagttt
agctggacccatatgctttctctgtttatcagtatagctgttcatcacat
gcctcctgcaatttagcgattagagctctttttgaaaatgcttttttttc
catacaatatattctgatcatggtttctctttccccagctcttcaaagat
ccttaccacacagcagtaagtctcactccagagtcttatgtgcagtgact
acccaacagtcatattaaatgtgacttgtattttttccctctttgaccaa
ttaattgtgaccagaggaattaattgtcagcccatttgattctagagtgg
cgctacttagcaggtagcacatggtacaagagtagggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126586041_126586592
seq2: B6Ng01-299H16.b_47_598 (reverse)

seq1  CCAACCTGACCCCCTACCCCCAGCAATGGCTCTGAAATGTCCCTAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGACCCCCTACCCCCAGCAATGGCTCTGAAATGTCCCTAGATAT  50

seq1  AGAGCCAACCAATTAAGATAAAAGTCACTTATCCTTCCCTGAAATTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAACCAATTAAGATAAAAGTCACTTATCCTTCCCTGAAATTCCCC  100

seq1  TAATGTGCTTTAAATTGTACCTACGAGCTCACCCGAGGGTCTCCATCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCTTTAAATTGTACCTACGAGCTCACCCGAGGGTCTCCATCCTG  150

seq1  GTAAATTGCATACCCCAACATGCCAGACTTCTACTGAATAAAGCTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGCATACCCCAACATGCCAGACTTCTACTGAATAAAGCTCTCTT  200

seq1  TGCTCTTACATACTTTTTGAGTATCATTCTTTTGTGAATCATGGACCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTACATACTTTTTGAGTATCATTCTTTTGTGAATCATGGACCCTT  250

seq1  ACAAGTGCTCCCTCTTCAGCTGGAGGCTGAGTCTCTTCTGTTGTTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGCTCCCTCTTCAGCTGGAGGCTGAGTCTCTTCTGTTGTTTCTAC  300

seq1  TGTTGTGATATGTACTTCTGACTAGCTGGCTATGAGCTTTGTGGTGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGATATGTACTTCTGACTAGCTGGCTATGAGCTTTGTGGTGATTC  350

seq1  TCCTGTCTCTACCTCCCATCTTTTCACAAGAGTGCAGGGGTTACAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCTACCTCCCATCTTTTCACAAGAGTGCAGGGGTTACAGATAT  400

seq1  GTACCAACACATCCAGCTTTTTCTGTAGATTTTAGAGATTCAACTTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAACACATCCAGCTTTTTCTGTAGATTTTAGAGATTCAACTTGGTC  450

seq1  ATCAGGCTGTGTGGCAGCACTTAACCTGCTGAGCCAACTGACACTAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTGTGTGGCAGCACTTAACCTGCTGAGCCAACTGACACTAGCCT  500

seq1  TATTTTATTTTTATGGATCCCCATCACCTTCCCCAGGCCTTTGTAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTTATGGATCCCCATCACCTTCCCCAGGCCTTTGTAGGAAT  550

seq1  TC  552
      ||
seq2  TC  552

seq1: chr3_126444641_126445729
seq2: B6Ng01-299H16.g_67_1157

seq1  GAATTCAATAATTTTTGCTCACATGGAAGTATAAGTGAGTGCTATTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATTTTTGCTCACATGGAAGTATAAGTGAGTGCTATTGAAT  50

seq1  AGCGCTTGTTGAGATAATGTATCGTGGGGAATTTATTTAGTTTTTGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTTGTTGAGATAATGTATCGTGGGGAATTTATTTAGTTTTTGTAAT  100

seq1  AGAATTCCTGGCCTTAATAAAAGCTAGCATTTGCTGGATAGTTAATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCTGGCCTTAATAAAAGCTAGCATTTGCTGGATAGTTAATAATG  150

seq1  ACTACTCTTTCCCAAACTATTATAATTGTCGATTTTGTTGTTTATAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTTTCCCAAACTATTATAATTGTCGATTTTGTTGTTTATAATAA  200

seq1  CTCTATAATGTTGGGGTAATTCTGATCTATGTTGGAGAGCTTGAGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAATGTTGGGGTAATTCTGATCTATGTTGGAGAGCTTGAGACAGA  250

seq1  AGAAGTGGCTTATATGCCTGAGGTCACCTTAGAAGTAGTTAGACTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGCTTATATGCCTGAGGTCACCTTAGAAGTAGTTAGACTTACTT  300

seq1  GAGTTTGACACACATGTGCTGTGGGCCACCACAGTGCTGCCATTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGACACACATGTGCTGTGGGCCACCACAGTGCTGCCATTTCTTTT  350

seq1  GCTTTTCTTTGTTTGTTTTGTTTTGTTACCAATGGACATTCCACTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTTTGTTTGTTTTGTTTTGTTACCAATGGACATTCCACTTCAAT  400

seq1  TTCATCCTTATGTTTGGTTCACATGCAAATGTTCAAGGAAGTTTTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTTATGTTTGGTTCACATGCAAATGTTCAAGGAAGTTTTCTGTA  450

seq1  ACCACTTGATGTTGTTACAGACCTTCAGTCATTAGTACTGGAGAAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGATGTTGTTACAGACCTTCAGTCATTAGTACTGGAGAAAACTT  500

seq1  ATTTATTGAATTAGGTGGGGAACCCTAGGTTATTCAAACAAAATCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGAATTAGGTGGGGAACCCTAGGTTATTCAAACAAAATCCAGAA  550

seq1  AACTTATTTATTGAATTAGGTGGGGAACCCTAGGTTATCCAAACAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTTATTGAATTAGGTGGGGAACCCTAGGTTATCCAAACAAAATC  600

seq1  CAACTGACTCACCCTAATCTTGGGGAAAGAAGAGATAAACTGAGCCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGACTCACCCTAATCTTGGGGAAAGAAGAGATAAACTGAGCCTCAC  650

seq1  AACCTAGGCTGTTGCGTTAAAATATATATATTCTCTTAAGTAATTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGGCTGTTGCGTTAAAATATATATATTCTCTTAAGTAATTGAAAT  700

seq1  ATTCATAAATATACTTGATCTCAACACCCAATGATAGGCTACTGAAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAATATACTTGATCTCAACACCCAATGATAGGCTACTGAAGTTT  750

seq1  AGCTGGACCCATATGCTTTCTCTGTTTATCAGTATAGCTGTTCATCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACCCATATGCTTTCTCTGTTTATCAGTATAGCTGTTCATCACAT  800

seq1  GCCTCCTGCAATTTAGCGATTAGAGCTCTTTTTGAAAATGC-TTTTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCTCCTGCAATTTAGCGATTAGAGCTCTTTTTGAAAATGCTTTTTTTTC  850

seq1  CATACAATATATTCTGATCATGGTTTCTCTTTCCCCAGCTCTTCAAAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATATATTCTGATCATGGTTTCTCTTTCCCCAGCTCTTCAAAGAT  900

seq1  CCTTACCACACAGCAGTAAGTCTCACTCCAGAGTC-TATGTGCAGTGACT  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTTACCACACAGCAGTAAGTCTCACTCCAGAGTCTTATGTGCAGTGACT  950

seq1  A-CCAACAGTCATATTAAATGTGACTTGTA-TTTTTCCCTCTTTGAACCA  996
      | |||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  ACCCAACAGTCATATTAAATGTGACTTGTATTTTTTCCCTCTTTG-ACCA  999

seq1  ATTAA-TGTGACCAGAGGAATTAATTGTCAGCCCA-TTGA-TCTAGAAGT  1043
      ||||| ||||||||||||||||||||||||||||| |||| ||||||   
seq2  ATTAATTGTGACCAGAGGAATTAATTGTCAGCCCATTTGATTCTAGAGTG  1049

seq1  GCGCTACTTAAGCAGGGTAGGCCACATGGGACAAGAGTAGGGGGAA  1089
      ||||||||| |||| |||||  ||||||| ||||||||||||||||
seq2  GCGCTACTT-AGCA-GGTAG--CACATGGTACAAGAGTAGGGGGAA  1091