BAC Information

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BAC

Clone NameB6Ng01-299I09
Chromosome3 (Build37)
Map Location 65,016,582 - 65,159,164
singlet/doubletdoublet
Overlap geneKcnab1
Upstream gene4930518C23Rik, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneSsr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299I09.bB6Ng01-299I09.g
ACCGA094340GA094341
length1,116590
definitionB6Ng01-299I09.b B6Ng01-299I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,158,046 - 65,159,164)(65,016,582 - 65,017,171)
sequence
gaattcacctatgtagaacaggctgtatttgaatttacagcaatcctcca
gtctctgactcccaagtgctgtgattacaactgtatgctgctatttctgg
cttggagtagatgtagtcttaatcgtatttaagttgatacggggcaggat
ttggattgagggagccaaggttagggtcgtagaatcgttgtttggcttac
atgtgttatttagaggtttccttggttggtttgtcttgaagatggggaat
gtttttattcactaccctctaacaaataatttggtttattagctaaacac
cttttcttgtgatcctgtatctcatcatagcacctaactgtaaggtttat
ttatcctttgttaaataaacgcgataaaaattgtaagaaaccttcccctc
ttctttaaagagtgtacaaatggggatgataaaggtctctggatactggg
gccattttttgcatcttcgccttagattagccacctgcaccattgcaaac
aagtcccttcctgttcatatcctgtttctcccagagctgggagctcatcc
agtcaccatgttctgcaggtacctgttgttctgggagctggacttgccga
ggtgtgccaaactgaaggggttcacagagagcaagctgaattggaagact
cccccatctgttctctacagacagggtgaagaagacagagaggccttgtg
gccaggctgtgtgaagttatcgaagcctgaaccagagcagttaaggtgga
aattgtgagtcttccaagactcattcatttacttgttggacacatttggt
atagaatttctagacttggggagtttagggttggatggcaagggtggaga
aataaagaagtgattttaaaatataggacagccagcgctatacagagaag
ccctgtatcgaaaaccaaaataaataaaataaaataaataaataaaatat
agagtgtatagaaaaatatagcagttccagataggaaatgaaatggagct
cttattggagtcagggctaggattgttgtcactttccggtcatgtattat
gttgaggcaattgaacagctacgtacaggcatggggagaatacagcattc
tttagaatgatggaac
gaattcacagccttgaagatgctaatcaagtgctttactggtgtgctgtg
ccctcagcctgagttttatttttgtttcttttgtgtttgttagatttcgc
ttttaacctgaaatttctacttgtcttgtggaactggttagtacccttca
ccaattagcccctgcctcatctgattcttggtgacaagtatgcctgctct
cccactgttgccatttatgcttgatgtggtcccatgaatgaatgattctg
aacaatgaatcataagacaaggtcttgatagtctcttgacttgggcacta
aattgttggacagtctacaaccagcattgagtttccactttccaatcttg
gcctgtggttatccacacctgatttccctgaatgaccaagaggagcagta
cagcctgcctatgatggactcaaagcctgagggaaacaggcaaacacaga
agcaaaaaccttagtggttccaaggccctgaggtgggagtatgtttgagg
gagcagcacctagccttgacaggcagatatctatcctctgtggctttgta
cacttgaatcggcataaattaggtatctgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65158046_65159164
seq2: B6Ng01-299I09.b_47_1162 (reverse)

seq1  GTTCCATCATCCTAA--GATGCTG--TTCT-CCCATGCTTTGTACGGTTA  45
      |||||||||| ||||   ||||||  |||| |||||||  ||||||  ||
seq2  GTTCCATCATTCTAAAGAATGCTGTATTCTCCCCATGC-CTGTACG--TA  47

seq1  GCTTGTTTCAATGCTTCAACATAATACATGA-CGGGAAGTGAC-ACAATC  93
      || ||||  | ||| |||||||||||||||| ||| ||||||| ||||||
seq2  GC-TGTTCAATTGCCTCAACATAATACATGACCGGAAAGTGACAACAATC  96

seq1  CTAGCCCTGACTCCA--TAGAGCTTCCATTTCATTTCCTATCTGGAACTG  141
      |||||||||||||||   ||||| ||||||||||||||||||||||||||
seq2  CTAGCCCTGACTCCAATAAGAGC-TCCATTTCATTTCCTATCTGGAACTG  145

seq1  CTTATATTTTTCTATAACACTCTATATTTTATTTTATTTTATTTTATTTT  191
      | ||||||||||||| ||||||||||||||||||   |||||||||||||
seq2  C-TATATTTTTCTAT-ACACTCTATATTTTATTT--ATTTATTTTATTTT  191

seq1  ATTTTATTTTTGGTTTTTCGATACAGGGCTTCTCTGTATAGCGCTGGCTG  241
      | ||||||||  | ||||||||||||||||||||||||||||||||||||
seq2  A-TTTATTTT--GGTTTTCGATACAGGGCTTCTCTGTATAGCGCTGGCTG  238

seq1  TCCTATATTTTAAAATCACTTCTTTATTTCTCCACCCTTGCCATCCAACC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATATTTTAAAATCACTTCTTTATTTCTCCACCCTTGCCATCCAACC  288

seq1  CTAAACTCCCCAAGTCTAGAAATTCTATACCAAATGTGTCCAACAAGTAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCCCCAAGTCTAGAAATTCTATACCAAATGTGTCCAACAAGTAA  338

seq1  ATGAATGAGTCTTGGAAGACTCACAATTTCCACCTTAACTGCTCTGGTTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAGTCTTGGAAGACTCACAATTTCCACCTTAACTGCTCTGGTTC  388

seq1  AGGCTTCGATAACTTCACACAGCCTGGCCACAAGGCCTCTCTGTCTTCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCGATAACTTCACACAGCCTGGCCACAAGGCCTCTCTGTCTTCTT  438

seq1  CACCCTGTCTGTAGAGAACAGATGGGGGAGTCTTCCAATTCAGCTTGCTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTCTGTAGAGAACAGATGGGGGAGTCTTCCAATTCAGCTTGCTC  488

seq1  TCTGTGAACCCCTTCAGTTTGGCACACCTCGGCAAGTCCAGCTCCCAGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAACCCCTTCAGTTTGGCACACCTCGGCAAGTCCAGCTCCCAGAA  538

seq1  CAACAGGTACCTGCAGAACATGGTGACTGGATGAGCTCCCAGCTCTGGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTACCTGCAGAACATGGTGACTGGATGAGCTCCCAGCTCTGGGA  588

seq1  GAAACAGGATATGAACAGGAAGGGACTTGTTTGCAATGGTGCAGGTGGCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGATATGAACAGGAAGGGACTTGTTTGCAATGGTGCAGGTGGCT  638

seq1  AATCTAAGGCGAAGATGCAAAAAATGGCCCCAGTATCCAGAGACCTTTAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGGCGAAGATGCAAAAAATGGCCCCAGTATCCAGAGACCTTTAT  688

seq1  CATCCCCATTTGTACACTCTTTAAAGAAGAGGGGAAGGTTTCTTACAATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCATTTGTACACTCTTTAAAGAAGAGGGGAAGGTTTCTTACAATT  738

seq1  TTTATCGCGTTTATTTAACAAAGGATAAATAAACCTTACAGTTAGGTGCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGCGTTTATTTAACAAAGGATAAATAAACCTTACAGTTAGGTGCT  788

seq1  ATGATGAGATACAGGATCACAAGAAAAGGTGTTTAGCTAATAAACCAAAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGATACAGGATCACAAGAAAAGGTGTTTAGCTAATAAACCAAAT  838

seq1  TATTTGTTAGAGGGTAGTGAATAAAAACATTCCCCATCTTCAAGACAAAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTAGAGGGTAGTGAATAAAAACATTCCCCATCTTCAAGACAAAC  888

seq1  CAACCAAGGAAACCTCTAAATAACACATGTAAGCCAAACAACGATTCTAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGGAAACCTCTAAATAACACATGTAAGCCAAACAACGATTCTAC  938

seq1  GACCCTAACCTTGGCTCCCTCAATCCAAATCCTGCCCCGTATCAACTTAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAACCTTGGCTCCCTCAATCCAAATCCTGCCCCGTATCAACTTAA  988

seq1  ATACGATTAAGACTACATCTACTCCAAGCCAGAAATAGCAGCATACAGTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGATTAAGACTACATCTACTCCAAGCCAGAAATAGCAGCATACAGTT  1038

seq1  GTAATCACAGCACTTGGGAGTCAGAGACTGGAGGATTGCTGTAAATTCAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACAGCACTTGGGAGTCAGAGACTGGAGGATTGCTGTAAATTCAA  1088

seq1  ATACAGCCTGTTCTACATAGGTGAATTC  1119
      ||||||||||||||||||||||||||||
seq2  ATACAGCCTGTTCTACATAGGTGAATTC  1116

seq1: chr3_65016582_65017171
seq2: B6Ng01-299I09.g_68_657

seq1  GAATTCACAGCCTTGAAGATGCTAATCAAGTGCTTTACTGGTGTGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCCTTGAAGATGCTAATCAAGTGCTTTACTGGTGTGCTGTG  50

seq1  CCCTCAGCCTGAGTTTTATTTTTGTTTCTTTTGTGTTTGTTAGATTTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCCTGAGTTTTATTTTTGTTTCTTTTGTGTTTGTTAGATTTCGC  100

seq1  TTTTAACCTGAAATTTCTACTTGTCTTGTGGAACTGGTTAGTACCCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCTGAAATTTCTACTTGTCTTGTGGAACTGGTTAGTACCCTTCA  150

seq1  CCAATTAGCCCCTGCCTCATCTGATTCTTGGTGACAAGTATGCCTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAGCCCCTGCCTCATCTGATTCTTGGTGACAAGTATGCCTGCTCT  200

seq1  CCCACTGTTGCCATTTATGCTTGATGTGGTCCCATGAATGAATGATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTTGCCATTTATGCTTGATGTGGTCCCATGAATGAATGATTCTG  250

seq1  AACAATGAATCATAAGACAAGGTCTTGATAGTCTCTTGACTTGGGCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAATCATAAGACAAGGTCTTGATAGTCTCTTGACTTGGGCACTA  300

seq1  AATTGTTGGACAGTCTACAACCAGCATTGAGTTTCCACTTTCCAATCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGGACAGTCTACAACCAGCATTGAGTTTCCACTTTCCAATCTTG  350

seq1  GCCTGTGGTTATCCACACCTGATTTCCCTGAATGACCAAGAGGAGCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGTTATCCACACCTGATTTCCCTGAATGACCAAGAGGAGCAGTA  400

seq1  CAGCCTGCCTATGATGGACTCAAAGCCTGAGGGAAACAGGCAAACACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCCTATGATGGACTCAAAGCCTGAGGGAAACAGGCAAACACAGA  450

seq1  AGCAAAAACCTTAGTGGTTCCAAGGCCCTGAGGTGGGAGTATGTTTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAACCTTAGTGGTTCCAAGGCCCTGAGGTGGGAGTATGTTTGAGG  500

seq1  GAGCAGCACCTAGCCTTGACAGGCAGATATCTATCCTCTGTGGCTTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCACCTAGCCTTGACAGGCAGATATCTATCCTCTGTGGCTTTGTA  550

seq1  CACTTGAATCGGCATAAATTAGGTATCTGGGGGGGGGGGG  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAATCGGCATAAATTAGGTATCTGGGGGGGGGGGG  590