BAC Information

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BAC

Clone NameB6Ng01-299M15
Chromosome3 (Build37)
Map Location 98,932,189 - 99,070,691
singlet/doubletdoublet
Overlap geneWars2, Tbx15
Upstream geneNotch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557
Downstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299M15.bB6Ng01-299M15.g
ACCGA094534GA094535
length1,1101,065
definitionB6Ng01-299M15.b B6Ng01-299M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,069,582 - 99,070,691)(98,932,189 - 98,933,258)
sequence
gaattcaatatgtagccactacccttcagacttgagaagtctgttctgta
cagtcaaaaaaaaaaaaaaatcagagcgcagcaagaaaactgaacatgtc
tcattccaaagatcatgaactagaaactccactgacactgctgtcactgg
agccctctagagtgggtgccattaaagccacctgaagacaggaaggacta
acaaagggccagagacctaaaagtataaataagctcttacaatgattaat
gatcggtttggggtataacaggcagcaagctcaaaatgttctccctaaag
cagttaaaaatcgtctcagccagactgtggtctggctttaatcccagcac
tcgggaggcagaggcaggaggatctctgagaggtcgagaccaacctggtc
tacacagaaagttccaggacaaccaggactacacagagaaaccctgtctc
agaaaacaaaaacaaaaacaaaaacaaaacaaaacaaaacccaaagtctc
caaaggaaacagaagagggcagttctatggatactggcaacaggaacagc
tcaaatcagactctagccagctggattagaggaaactggagttgtacagc
tgtatgttgaatcttttgaacctcaatttcccggtctgtacaatgaagaa
acaatgatttttttccccctctgaggactagctggtaagtgagataaacg
aacggttaggggcctggatatggctcaatggttaggaacacttgctgctc
tttcagagcacaggagttccattccacatgctcttttcccctcactttca
ggtcttcctctcagttaatctcttggtgttggagaggtggctcagcattc
aaaagcagtggctatcctcctggaggactagggttagcatcccacactca
cgaggtgagtctggttccaggtgatccagtggtctcttctgacctccaat
tgacattgcatacatgtgtacacagacatacatgcaggcaaatacacacc
atcactcacatccacacacgcacattaacacagtcacagtcgcaccacac
accccaatatatatattataagtgatcgtaaggttaccccttatttcctt
ctggcttcct
gaattctaaggtcttctccttttcttttttaaaaagctacattttatgaa
ttcaccttgtgtgggtataaaagggtgtggtgtgtgctgggctctgcaca
ggcctcgatgcacatgtggctgtctaaggacaacttgcaggtgttagttt
tgttcccacagcgtaggtactcaggttatcagtcttggtggtatgcgcct
ttacctgctgtgccatttgctagtcctaagatttgaatttccctgtaaat
gtattcctcttaatagtaatattttcaataagcaattttccttctttcct
tcttttcctccttccctctctccttcccattcctcccacttctcttccct
tcttcctttcttcttcccttgccaccctcctttctttcttccttccttat
cttctctcctccttcctctctttcttctctttcccttccattctttcctt
cttcccatccttttctcccttgactccattcactccttcccttcttcctt
catccctctcttcttccctttcctcctgagaagcttgggatgaagtacta
ctcccagaaaaaaaaaagagtagtttttcatatcattacttttaagtaac
tgtctccaaaatggaggtaaatcaacatgttttgcttaagttatagtagt
tctgaagtaggctttgctttgcgtaattctcttctgctcaactggaagga
ctcccaggcaacctaccaagaaatctgaacgttgccgaaagcttagaata
gaggtgcacagaatatctgacttattaactattgacttagcattattaat
ggcttcctgtctagatactaaggaccataaaatggtttccccccctacca
aaaatcacatcactgttgaaaaacacgggcatataattactttgttacca
gggaagatttgctcaatatttatttgagcaccagaaatttttagaacttg
ccagactatcttgaacccccaaatgatacagccacacaggtaggccaagc
taaccctcgaagctggccagggtaacctctcaggcatcagcatcatggag
agctcagtgtgatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99069582_99070691
seq2: B6Ng01-299M15.b_47_1156 (reverse)

seq1  AGGAGGCCAGGAAGGAATTAAGGGGTAACTTTAAGATTCACTATAT-ATA  49
      |||| |||| ||||||| ||||||||||| ||| || ||||| ||| |||
seq2  AGGAAGCCA-GAAGGAAATAAGGGGTAACCTTACGA-TCACT-TATAATA  47

seq1  TATATATGTGTGTGTGT-GTGTGTGTGTGTGTGTGTT-ATGTGTGTGTGT  97
      |||||||  | |||||| ||| |  ||||  |||||| ||||| ||||||
seq2  TATATATTGGGGTGTGTGGTGCGACTGTGACTGTGTTAATGTGCGTGTGT  97

seq1  GTGTGTGTGTGTGTGTGTGT-TTTGCCTGCATGTATGTCTGTGTACCACA  146
      |  |||| |||   |||||| |||||||||||||||||||||||| ||||
seq2  GGATGTGAGTGATGGTGTGTATTTGCCTGCATGTATGTCTGTGTA-CACA  146

seq1  TGTATGCAATGTCAATTGGAGGTCAGAAGAGACCACTGGATCACCTGGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAATGTCAATTGGAGGTCAGAAGAGACCACTGGATCACCTGGAA  196

seq1  CCAGACTCACCTCGTGAGTGTGGGATGCTAACCCTAGTCCTCCAGGAGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCACCTCGTGAGTGTGGGATGCTAACCCTAGTCCTCCAGGAGGA  246

seq1  TAGCCACTGCTTTTGAATGCTGAGCCACCTCTCCAACACCAAGAGATTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTGCTTTTGAATGCTGAGCCACCTCTCCAACACCAAGAGATTAA  296

seq1  CTGAGAGGAAGACCTGAAAGTGAGGGGAAAAGAGCATGTGGAATGGAACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGAAGACCTGAAAGTGAGGGGAAAAGAGCATGTGGAATGGAACT  346

seq1  CCTGTGCTCTGAAAGAGCAGCAAGTGTTCCTAACCATTGAGCCATATCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTCTGAAAGAGCAGCAAGTGTTCCTAACCATTGAGCCATATCCA  396

seq1  GGCCCCTAACCGTTCGTTTATCTCACTTACCAGCTAGTCCTCAGAGGGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTAACCGTTCGTTTATCTCACTTACCAGCTAGTCCTCAGAGGGGG  446

seq1  AAAAAAATCATTGTTTCTTCATTGTACAGACCGGGAAATTGAGGTTCAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCATTGTTTCTTCATTGTACAGACCGGGAAATTGAGGTTCAAA  496

seq1  AGATTCAACATACAGCTGTACAACTCCAGTTTCCTCTAATCCAGCTGGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAACATACAGCTGTACAACTCCAGTTTCCTCTAATCCAGCTGGCT  546

seq1  AGAGTCTGATTTGAGCTGTTCCTGTTGCCAGTATCCATAGAACTGCCCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGATTTGAGCTGTTCCTGTTGCCAGTATCCATAGAACTGCCCTC  596

seq1  TTCTGTTTCCTTTGGAGACTTTGGGTTTTGTTTTGTTTTGTTTTTGTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCCTTTGGAGACTTTGGGTTTTGTTTTGTTTTGTTTTTGTTTT  646

seq1  TGTTTTTGTTTTCTGAGACAGGGTTTCTCTGTGTAGTCCTGGTTGTCCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTCTGAGACAGGGTTTCTCTGTGTAGTCCTGGTTGTCCTG  696

seq1  GAACTTTCTGTGTAGACCAGGTTGGTCTCGACCTCTCAGAGATCCTCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCTGTGTAGACCAGGTTGGTCTCGACCTCTCAGAGATCCTCCTG  746

seq1  CCTCTGCCTCCCGAGTGCTGGGATTAAAGCCAGACCACAGTCTGGCTGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCGAGTGCTGGGATTAAAGCCAGACCACAGTCTGGCTGAG  796

seq1  ACGATTTTTAACTGCTTTAGGGAGAACATTTTGAGCTTGCTGCCTGTTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTTTAACTGCTTTAGGGAGAACATTTTGAGCTTGCTGCCTGTTAT  846

seq1  ACCCCAAACCGATCATTAATCATTGTAAGAGCTTATTTATACTTTTAGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACCGATCATTAATCATTGTAAGAGCTTATTTATACTTTTAGGT  896

seq1  CTCTGGCCCTTTGTTAGTCCTTCCTGTCTTCAGGTGGCTTTAATGGCACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCTTTGTTAGTCCTTCCTGTCTTCAGGTGGCTTTAATGGCACC  946

seq1  CACTCTAGAGGGCTCCAGTGACAGCAGTGTCAGTGGAGTTTCTAGTTCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGAGGGCTCCAGTGACAGCAGTGTCAGTGGAGTTTCTAGTTCAT  996

seq1  GATCTTTGGAATGAGACATGTTCAGTTTTCTTGCTGCGCTCTGATTTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGGAATGAGACATGTTCAGTTTTCTTGCTGCGCTCTGATTTTTT  1046

seq1  TTTTTTTTTGACTGTACAGAACAGACTTCTCAAGTCTGAAGGGTAGTGGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGACTGTACAGAACAGACTTCTCAAGTCTGAAGGGTAGTGGC  1096

seq1  TACATATTGAATTC  1110
      ||||||||||||||
seq2  TACATATTGAATTC  1110

seq1: chr3_98932189_98933258
seq2: B6Ng01-299M15.g_68_1132

seq1  GAATTCTAAGGTCTTCTCCTTTTCTTTTTTAAAAAGCTACATTTTATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGTCTTCTCCTTTTCTTTTTTAAAAAGCTACATTTTATGAA  50

seq1  TTCACCTTGTGTGGGTATAAAAGGGTGTGGTGTGTGCTGGGCTCTGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTGTGTGGGTATAAAAGGGTGTGGTGTGTGCTGGGCTCTGCACA  100

seq1  GGCCTCGATGCACATGTGGCTGTCTAAGGACAACTTGCAGGTGTTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGATGCACATGTGGCTGTCTAAGGACAACTTGCAGGTGTTAGTTT  150

seq1  TGTTCCCACAGCGTAGGTACTCAGGTTATCAGTCTTGGTGGTATGCGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCACAGCGTAGGTACTCAGGTTATCAGTCTTGGTGGTATGCGCCT  200

seq1  TTACCTGCTGTGCCATTTGCTAGTCCTAAGATTTGAATTTCCCTGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCTGTGCCATTTGCTAGTCCTAAGATTTGAATTTCCCTGTAAAT  250

seq1  GTATTCCTCTTAATAGTAATATTTTCAATAAGCAATTTTCCTTCTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTCTTAATAGTAATATTTTCAATAAGCAATTTTCCTTCTTTCCT  300

seq1  TCTTTTCCTCCTTCCCTCTCTCCTTCCCATTCCTCCCACTTCTCTTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTCCTTCCCTCTCTCCTTCCCATTCCTCCCACTTCTCTTCCCT  350

seq1  TCTTCCTTTCTTCTTCCCTTGCCACCCTCCTTTCTTTCTTCCTTCCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTCTTCTTCCCTTGCCACCCTCCTTTCTTTCTTCCTTCCTTAT  400

seq1  CTTCTCTCCTCCTTCCTCTCTTTCTTCTCTTTCCCTTCCATTCTTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCTCCTTCCTCTCTTTCTTCTCTTTCCCTTCCATTCTTTCCTT  450

seq1  CTTCCCATCCTTTTCTCCCTTGACTCCATTCACTCCTTCCCTTCTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATCCTTTTCTCCCTTGACTCCATTCACTCCTTCCCTTCTTCCTT  500

seq1  CATCCCTCTCTTCTTCCCTTTCCTCCTGAGAAGCTTGGGATGAAGTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTCTTCTTCCCTTTCCTCCTGAGAAGCTTGGGATGAAGTACTA  550

seq1  CTCCCAGAAAAAAAAAAGAGTAGTTTTTCATATCATTACTTTTAAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGAAAAAAAAAAGAGTAGTTTTTCATATCATTACTTTTAAGTAAC  600

seq1  TGTCTCCAAAATGGAGGTAAATCAACATGTTTTGCTTAAGTTATAGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAAAATGGAGGTAAATCAACATGTTTTGCTTAAGTTATAGTAGT  650

seq1  TCTGAAGTAGGCTTTGCTTTGCGTAATTCTCTTCTGCTCAACTGGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTAGGCTTTGCTTTGCGTAATTCTCTTCTGCTCAACTGGAAGGA  700

seq1  CTCCCAGGCAACCTACCAAGAAATCTGAACGTTGCCGAAAGCTTAGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGCAACCTACCAAGAAATCTGAACGTTGCCGAAAGCTTAGAATA  750

seq1  GAGGTGCACAGAATATCTGACTTATTAACTATTGACTTAGCATTATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCACAGAATATCTGACTTATTAACTATTGACTTAGCATTATTAAT  800

seq1  GGCTTCCTGTCTAGATACTAAGGACCATAAAATGGTTT-CCCCCCTACCA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCTTCCTGTCTAGATACTAAGGACCATAAAATGGTTTCCCCCCCTACCA  850

seq1  AAAATCACATCACTGTTGAAAAACACGGGCATATAATTACTTTGTTACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACATCACTGTTGAAAAACACGGGCATATAATTACTTTGTTACCA  900

seq1  GGGAAGATTTGCTCAATATTTATTTGAGCACCAGAAATTTTTAGAACTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATTTGCTCAATATTTATTTGAGCACCAGAAATTTTTAGAACTTG  950

seq1  CCAGACTATCTTGAACCCCCAAATGATACAGCCACACAGGTAGGCCAAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTATCTTGAACCCCCAAATGATACAGCCACACAGGTAGGCCAAGC  1000

seq1  TAACCCTCGAAAGCTGGCCAGGGTAAACCTCTTCAAGGCCATCAGCATCA  1049
      ||||||||| |||||||||||||| |||||| |||  | |||||||||||
seq2  TAACCCTCG-AAGCTGGCCAGGGT-AACCTC-TCA--GGCATCAGCATCA  1045

seq1  TGAGGAGCTTCAGTGTGATGC  1070
      ||  |||| ||||||||||||
seq2  TGGAGAGC-TCAGTGTGATGC  1065