BAC Information

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BAC

Clone NameB6Ng01-299N23
Chromosome3 (Build37)
Map Location 131,150,984 - 131,306,694
singlet/doubletdoublet
Overlap genePapss1
Upstream geneCol25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443
Downstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299N23.bB6Ng01-299N23.g
ACCGA094596GA094597
length8821,159
definitionB6Ng01-299N23.b B6Ng01-299N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,150,984 - 131,151,864)(131,305,544 - 131,306,694)
sequence
gaattcttaggaattgttggtggcggggggcgggggccaggaagcagggc
atggtagtgcatatctgcagtcccagcattggggaaactgaggcaggagg
atctcaagttcaagtagccctacacaggaagattgaccttcctggctctc
tcttccctccctctcttttcctcaaaatatagcctcaacatatcactttt
taaaaaaaggccataatctgtatttcattgttttagcaaacaaaagataa
cttctctttctctgtatattttgtttaaagttgcacggacgccgggtgtg
gtggcgcacgcctttaatcccagcactcgggaagcagaggcaggtggatt
tctgagtttgaggccagcctggtctacaaagtgagttccaggacagccag
ggctacacagagaagcactgtctcgaaaaacaaaacaaaacaaaacaaca
acaaaaaaattgcacggacaggagagctaacgcaggacttggttattacc
ttgggtcccctacatccccacagccactgcctgctctccacactaccacc
gctgtagatatgagaccacgtgcttctggtccttcctaatacctcctagg
actttcaccaagctctgggaaaaagaaactcggggtgaacaacctagagg
tgttgctgagtttttctaaaggttcagaagtcaaccagtttgacttacaa
atgaaacgaacagtaaattaaatattaacttgcttttaaaaaacaactcc
tttacttaggagatcgctatgaaacacgactctatcagtggaccaaggaa
tatggtctataaaaacaaaaacaaaaaatgaactttgcttgcttctagga
aaggagaggagaggagaggagaggagaggaga

gaattcttcgcattgaaattttttcacaaccaagggggcatatgcacaca
aaccataaataagtcaaaaaattaattttattgaatcaaggcattcattc
agtacttaacacagattgcaagagaacctcaacacgtagggctgcaaggg
agagggggagcagtttacatttttaatgtaaaataaaaaccctaattgct
acagatagtttataaaatttgtaaaattccccaaacaaggtctagccaac
tttattgtttagtgattttttcccccttacttaaagaatgaaaagctaga
tgatgtgtgtattactggttataactaataaatcagcttggaaaaattgt
aagacagaagcataaatacaatataaaaaggcgagatttttaaaatcgta
ttataagaatattaacaataagtggaaaagatacattagagccagcgtgg
tgttacactagtttgaaacagaactgaaagacagaccaaaaccaatgcac
gcggagggaaacggcctgatttcaggaagtgtgtccagtcagacaaccgc
agagaagggctgtcggtggctgcgtggtcccctctgttactcagccatgc
gtcccaggcagagtgcccagctcagcagttaggctttctctaaggacttg
tagtactctaccagcacagtccaggccttgggggccatgaagccctctgg
aggtttctggccttcgcgtgccagcttgcgcatcctcgttcctgaaataa
actcgaagtcttcgtggctgaaagagaaaaaggccagttacttcactatt
ttacaaagctaacaggaaaccacaaaggggaatttgtcccttcagttcat
gttgggtgactagaccagtgagaaaaagcatcgcttaggtctaatgtgtc
actgagctaaaccaccgcacaattcttcagctttagagctaggaaaaacg
gacaaacagaaactgaattattgagatcattatgttttacacatcctttc
ccagcagggacaatctgcgcagcattgcgggcgcactatttgtcacacag
aggaggtaaatgggacgtaaagggagccagctcatgacttctcaaggcct
acctggcctgcctttccccttctttccattagttcagagaaattgccact
gcaccagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131150984_131151864
seq2: B6Ng01-299N23.b_47_928

seq1  GAATTCTTAGGAATTGTTGGTGGCGGGGGGCGGGGGCCAGGAAGCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAATTGTTGGTGGCGGGGGGCGGGGGCCAGGAAGCAGGGC  50

seq1  ATGGTAGTGCATATCTGCAGTCCCAGCATTGGGGAAACTGAGGCAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTGCATATCTGCAGTCCCAGCATTGGGGAAACTGAGGCAGGAGG  100

seq1  ATCTCAAGTTCAAGTAGCCCTACACAGGAAGATTGACCTTCCTGGCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGTTCAAGTAGCCCTACACAGGAAGATTGACCTTCCTGGCTCTC  150

seq1  TCTTCCCTCCCTCTCTTTTCCTCAAAATATAGCCTCAACATATCACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCCCTCTCTTTTCCTCAAAATATAGCCTCAACATATCACTTTT  200

seq1  TAAAAAAAGGCCATAATCTGTATTTCATTGTTTTAGCAAACAAAAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGGCCATAATCTGTATTTCATTGTTTTAGCAAACAAAAGATAA  250

seq1  CTTCTCTTTCTCTGTATATTTTGTTTAAAGTTGCACGGACGCCGGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTCTCTGTATATTTTGTTTAAAGTTGCACGGACGCCGGGTGTG  300

seq1  GTGGCGCACGCCTTTAATCCCAGCACTCGGGAAGCAGAGGCAGGTGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGCACGCCTTTAATCCCAGCACTCGGGAAGCAGAGGCAGGTGGATT  350

seq1  TCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  400

seq1  GGCTACACAGAGAAGCACTGTCTCGAAAAACAAAACAAAACAAAACAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAGAAGCACTGTCTCGAAAAACAAAACAAAACAAAACAACA  450

seq1  ACAAAAAAATTGCACGGACAGGAGAGCTAACGCAGGACTTGGTTATTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAATTGCACGGACAGGAGAGCTAACGCAGGACTTGGTTATTACC  500

seq1  TTGGGTCCCCTACATCCCCACAGCCACTGCCTGCTCTCCACACTACCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCCCTACATCCCCACAGCCACTGCCTGCTCTCCACACTACCACC  550

seq1  GCTGTAGATATGAGACCACGTGCTTCTGGTCCTTCCTAATACCTCCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGATATGAGACCACGTGCTTCTGGTCCTTCCTAATACCTCCTAGG  600

seq1  ACTTTCACCAAGCTCTGGGAAAAAGAAACTCGGGGTGAACAACCTAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACCAAGCTCTGGGAAAAAGAAACTCGGGGTGAACAACCTAGAGG  650

seq1  TGTTGCTGAGTTTTTCTAAAGGTTCAGAAGTCAACCAGTTTGACTTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGAGTTTTTCTAAAGGTTCAGAAGTCAACCAGTTTGACTTACAA  700

seq1  ATGAAACGAACAGTAAATTAAATATTAACTTGCTTTTAAAAAACAACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACGAACAGTAAATTAAATATTAACTTGCTTTTAAAAAACAACTCC  750

seq1  TTTACTTAGGAGATCGCTATGAAACACGACTCTATCAGTGGACCAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAGGAGATCGCTATGAAACACGACTCTATCAGTGGACCAAGGAA  800

seq1  TATGGTCTATAAAAACAAAAAC-AAAAATGAACTTTGCTTGCTTCTAGGA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATGGTCTATAAAAACAAAAACAAAAAATGAACTTTGCTTGCTTCTAGGA  850

seq1  AAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGA  881
      ||||||||||||||||||||||||||||||||
seq2  AAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGA  882


seq1: chr3_131305544_131306694
seq2: B6Ng01-299N23.g_67_1225 (reverse)

seq1  GACT-GTGCAGTGGCAA-TTCTCTGAACCTAAGAGAAAAGAAGAGAGAAG  48
      |||| |||||||||||| ||||||||| ||||  | ||||||| | ||| 
seq2  GACTGGTGCAGTGGCAATTTCTCTGAA-CTAA-TGGAAAGAAG-GGGAAA  47

seq1  GGCA-GCCAGGTAGGCC-TGAG-AGTCATG-GCT-GCT-CCTTTCCGT-C  91
      |||| |||||||||||| |||| ||||||| ||| ||| ||||| ||| |
seq2  GGCAGGCCAGGTAGGCCTTGAGAAGTCATGAGCTGGCTCCCTTTACGTCC  97

seq1  CATT----TCCTCTCTGTGACAAATAGTGCGCCCGCCATGCTGCGCAGGA  137
      ||||    |||||| ||||||||||||||||||||| |||||||||||  
seq2  CATTTACCTCCTCTGTGTGACAAATAGTGCGCCCGCAATGCTGCGCAGAT  147

seq1  TGTCCCTGCTGGG-AAGGATGTTGTAAAACATTAATTGATCTCAATAATT  186
      ||||||||||||| ||||||| ||||||||||  | |||||||||||| |
seq2  TGTCCCTGCTGGGAAAGGATG-TGTAAAACAT--AATGATCTCAATAA-T  193

seq1  TCAGTTTCTGTTTGTCCGTTTTTCCTAGCTCTAAAGCTGAAGAATTGTGC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTGTTTGTCCGTTTTTCCTAGCTCTAAAGCTGAAGAATTGTGC  243

seq1  GGTGGTTTAGCTCAGTGACACATTAGACCTAAGCGATGCTTTTTCTCACT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTAGCTCAGTGACACATTAGACCTAAGCGATGCTTTTTCTCACT  293

seq1  GGTCTAGTCACCCAACATGAACTGAAGGGACAAATTCCCC-TTGTGGTTT  335
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTCTAGTCACCCAACATGAACTGAAGGGACAAATTCCCCTTTGTGGTTT  343

seq1  CCTGTTAGCTTTGTAAAATAGTGAAGTAACTGGCCTTTTTCTCTTTCAGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGCTTTGTAAAATAGTGAAGTAACTGGCCTTTTTCTCTTTCAGC  393

seq1  CACGAAGACTTCGAGTTTATTTCAGGAACGAGGATGCGCAAGCTGGCACG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAGACTTCGAGTTTATTTCAGGAACGAGGATGCGCAAGCTGGCACG  443

seq1  CGAAGGCCAGAAACCTCCAGAGGGCTTCATGGCCCCCAAGGCCTGGACTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGCCAGAAACCTCCAGAGGGCTTCATGGCCCCCAAGGCCTGGACTG  493

seq1  TGCTGGTAGAGTACTACAAGTCCTTAGAGAAAGCCTAACTGCTGAGCTGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTAGAGTACTACAAGTCCTTAGAGAAAGCCTAACTGCTGAGCTGG  543

seq1  GCACTCTGCCTGGGACGCATGGCTGAGTAACAGAGGGGACCACGCAGCCA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGCCTGGGACGCATGGCTGAGTAACAGAGGGGACCACGCAGCCA  593

seq1  CCGACAGCCCTTCTCTGCGGTTGTCTGACTGGACACACTTCCTGAAATCA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAGCCCTTCTCTGCGGTTGTCTGACTGGACACACTTCCTGAAATCA  643

seq1  GGCCGTTTCCCTCCGCGTGCATTGGTTTTGGTCTGTCTTTCAGTTCTGTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTTTCCCTCCGCGTGCATTGGTTTTGGTCTGTCTTTCAGTTCTGTT  693

seq1  TCAAACTAGTGTAACACCACGCTGGCTCTAATGTATCTTTTCCACTTATT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTAGTGTAACACCACGCTGGCTCTAATGTATCTTTTCCACTTATT  743

seq1  GTTAATATTCTTATAATACGATTTTAAAAATCTCGCCTTTTTATATTGTA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTCTTATAATACGATTTTAAAAATCTCGCCTTTTTATATTGTA  793

seq1  TTTATGCTTCTGTCTTACAATTTTTCCAAGCTGATTTATTAGTTATAACC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTTCTGTCTTACAATTTTTCCAAGCTGATTTATTAGTTATAACC  843

seq1  AGTAATACACACATCATCTAGCTTTTCATTCTTTAAGTAAGGGGGAAAAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACACACATCATCTAGCTTTTCATTCTTTAAGTAAGGGGGAAAAA  893

seq1  ATCACTAAACAATAAAGTTGGCTAGACCTTGTTTGGGGAATTTTACAAAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAAACAATAAAGTTGGCTAGACCTTGTTTGGGGAATTTTACAAAT  943

seq1  TTTATAAACTATCTGTAGCAATTAGGGTTTTTATTTTACATTAAAAATGT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACTATCTGTAGCAATTAGGGTTTTTATTTTACATTAAAAATGT  993

seq1  AAACTGCTCCCCCTCTCCCTTGCAGCCCTACGTGTTGAGGTTCTCTTGCA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTCCCCCTCTCCCTTGCAGCCCTACGTGTTGAGGTTCTCTTGCA  1043

seq1  ATCTGTGTTAAGTACTGAATGAATGCCTTGATTCAATAAAATTAATTTTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTTAAGTACTGAATGAATGCCTTGATTCAATAAAATTAATTTTT  1093

seq1  TGACTTATTTATGGTTTGTGTGCATATGCCCCCTTGGTTGTGAAAAAATT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATTTATGGTTTGTGTGCATATGCCCCCTTGGTTGTGAAAAAATT  1143

seq1  TCAATGCGAAGAATTC  1151
      ||||||||||||||||
seq2  TCAATGCGAAGAATTC  1159


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