BAC Information

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BAC

Clone NameB6Ng01-299P02
Chromosome3 (Build37)
Map Location 108,140,255 - 108,284,711
singlet/doubletdoublet
Overlap geneSort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik
Upstream geneLOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5
Downstream gene1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299P02.bB6Ng01-299P02.g
ACCGA094648GA094649
length1,170852
definitionB6Ng01-299P02.b B6Ng01-299P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,140,255 - 108,141,412)(108,283,862 - 108,284,711)
sequence
gaattccttagaagcatctctcatcttaaccgttgtcccctgtggtctcc
caacatggatttcatctttatcttttagaccatcaggtatctaatccttt
ggatcaattatctaaagccacggctatcttaaaggcacagaacatttaag
tgccaatcaaatcatcattttgagaatttcaagcaagtatttgcaaatgg
taatagagccaacctagtgatggtccattttcatccttagctctgtggaa
ggagatggaatgccagccattaggagtactataccagaatgaaggagcca
gagaaatgcagaagagaattggcaatttgctgcaattgtacccactgagg
aaatgattattaatataactgttttaaaaatgtttctattcatgtccttg
acatgacaccttcacagaaaattataaaattaaatgttggtacatttatt
ctaggacacaacaagaaggatccatgtgtcaacagaccagggggacacat
ggagcatggcacaacttccttctgtgggacaggaacagttctactccatc
ctggcagccaatgaggacatggtcttcatgcatgtagatgaacctggagg
taagagccgtttagtgcccacccttcaattcacccttgaattccttttta
tgtgttaagttttcctcttaccctggaagaagtttatcctggagagaatg
tgctgcatctgaaaggctgcttgttctggtgcctagggtagtgtgtgagg
gtagtgaatgctttagagcagagcttcccagagctgtgggtacctgttca
gtagttatgagttgcaagcttgtctgtgaccagggaaaaccaggaaatat
tcaggaggcattttttggcttgtttgctgtttgtggagacagagacggac
tcattccatactccagatgatttcagactcacagtgctcctgccattagc
cttcctgaatgctgggagttacaggtatgcacccactttgcccactttag
aaatgcaataatcatttgataaagcaattttaatgtcttctaaacataat
gctaaaaagttgggggcctgaacattttgttttcttctagtcttactttc
ctgagataaaggttttaaataaacaatctgtaataacaattggtggactt
attctgcaatttttaaaaga
gaattccacagtgtgagcatcacaccagccgtccttgggatcccagagga
gaggccgagggccgtaacggagggggcaggctgagacataagtgattcct
ctttttgtggttgctagatgatgctatacagtggctagtttgcccctatg
acttcatcccaggagccagagcgttccagctttgaggctgtgttttctgg
aaaaccatagaagaatgagcaatcgtcagtctcccttactgccagccccc
tctggtcctgttctgatcgctccattagagatgcttgtagtgcatatgat
gcacggatcatatgtggaggatcagggaagagtgggagagggttaaaaac
acaaagctacaaaaggcaagttagtgatgcccatttttgtgatgaattaa
cacctaccttatgcctttttgaaggttgagctaaatagaggcaataacgt
cctctattggagaaccacagctttctcggtgtggtccaaagtgtccaagc
ccgtgcttgttagaaacatcgccataacaggtacagaaaacagcttggat
ctgggtctgctgctggcttcctggactcctggcttctagggagggatggg
catttggtccccagggccttggtgtctgggctcaagctttgatcgtctat
accattctttcttcctaggggtggcttacacctccgagtgtttcccctgc
aagcctggcacatacgctgccaagcagggctcccctttctgcaagcttgt
ccagccaactactactcaaacaaaggagaaacgtcctgccatccgtgtga
tgctgacaaatactcaggtgatgttttctgagggtaggggtgttggggga
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108140255_108141412
seq2: B6Ng01-299P02.b_45_1214

seq1  GAATTCCTTAGAAGCATCTCTCATCTTAACCGTTGTCCCCTGTGGTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGAAGCATCTCTCATCTTAACCGTTGTCCCCTGTGGTCTCC  50

seq1  CAACATGGATTTCATCTTTATCTTTTAGACCATCAGGTATCTAATCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGATTTCATCTTTATCTTTTAGACCATCAGGTATCTAATCCTTT  100

seq1  GGATCAATTATCTAAAGCCACGGCTATCTTAAAGGCACAGAACATTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAATTATCTAAAGCCACGGCTATCTTAAAGGCACAGAACATTTAAG  150

seq1  TGCCAATCAAATCATCATTTTGAGAATTTCAAGCAAGTATTTGCAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATCAAATCATCATTTTGAGAATTTCAAGCAAGTATTTGCAAATGG  200

seq1  TAATAGAGCCAACCTAGTGATGGTCCATTTTCATCCTTAGCTCTGTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGCCAACCTAGTGATGGTCCATTTTCATCCTTAGCTCTGTGGAA  250

seq1  GGAGATGGAATGCCAGCCATTAGGAGTACTATACCAGAATGAAGGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAATGCCAGCCATTAGGAGTACTATACCAGAATGAAGGAGCCA  300

seq1  GAGAAATGCAGAAGAGAATTGGCAATTTGCTGCAATTGTACCCACTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGCAGAAGAGAATTGGCAATTTGCTGCAATTGTACCCACTGAGG  350

seq1  AAATGATTATTAATATAACTGTTTTAAAAATGTTTCTATTCATGTCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTATTAATATAACTGTTTTAAAAATGTTTCTATTCATGTCCTTG  400

seq1  ACATGACACCTTCACAGAAAATTATAAAATTAAATGTTGGTACATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACACCTTCACAGAAAATTATAAAATTAAATGTTGGTACATTTATT  450

seq1  CTAGGACACAACAAGAAGGATCCATGTGTCAACAGACCAGGGGGACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACACAACAAGAAGGATCCATGTGTCAACAGACCAGGGGGACACAT  500

seq1  GGAGCATGGCACAACTTCCTTCTGTGGGACAGGAACAGTTCTACTCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGCACAACTTCCTTCTGTGGGACAGGAACAGTTCTACTCCATC  550

seq1  CTGGCAGCCAATGAGGACATGGTCTTCATGCATGTAGATGAACCTGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGCCAATGAGGACATGGTCTTCATGCATGTAGATGAACCTGGAGG  600

seq1  TAAGAGCCGTTTAGTGCCCACCCTTCAATTCACCCTTGAATTCCTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCGTTTAGTGCCCACCCTTCAATTCACCCTTGAATTCCTTTTTA  650

seq1  TGTGTTAAGTTTTCCTCTTACCCTGGAAGAAGTTTATCCTGGAGAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAGTTTTCCTCTTACCCTGGAAGAAGTTTATCCTGGAGAGAATG  700

seq1  TGCTGCATCTGAAAGGCTGCTTGTTCTGGTGCCTAGGGTAGTGTGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATCTGAAAGGCTGCTTGTTCTGGTGCCTAGGGTAGTGTGTGAGG  750

seq1  GTAGTGAATGCTTTAGAGCAGAGCTTCCCAGAGCTGTGGGTACCTGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAATGCTTTAGAGCAGAGCTTCCCAGAGCTGTGGGTACCTGTTCA  800

seq1  GTAGTTATGAGTTGCAAGCTTGTCTGTGACCAGGGAAAACCAGGAAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATGAGTTGCAAGCTTGTCTGTGACCAGGGAAAACCAGGAAATAT  850

seq1  TCAGGAGGCA-TTTTTGGCTTGTTTGCTGTTTTGTGGAGACAGAGACGGA  899
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TCAGGAGGCATTTTTTGGCTTGTTTGCTG-TTTGTGGAGACAGAGACGGA  899

seq1  CTCATTCCATACTCCAGATGATTTCAGACTCACAGTGCTCCTGCCA-TAG  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCATTCCATACTCCAGATGATTTCAGACTCACAGTGCTCCTGCCATTAG  949

seq1  CC-TCCTGAATGCT-GGAGTTACAAGTATGCA-CCACTTTGCCCACTTTA  995
      || ||||||||||| ||||||||| ||||||| |||||||||||||||||
seq2  CCTTCCTGAATGCTGGGAGTTACAGGTATGCACCCACTTTGCCCACTTTA  999

seq1  GAAATGC-ATAATCATTTGATAAAGCAATTTT-ATGTCTTCTAAACATAA  1043
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  GAAATGCAATAATCATTTGATAAAGCAATTTTAATGTCTTCTAAACATAA  1049

seq1  TGCTAAAAAGTTGGGG--CTG-ACATTTTGTTTCTTTCCTAGTC-TACTT  1089
      ||||||||||||||||  ||| ||||||||||| | | |||||| |||||
seq2  TGCTAAAAAGTTGGGGGCCTGAACATTTTGTTT-TCTTCTAGTCTTACTT  1098

seq1  TCCTGATGATAAATGTTTTTAAATAAAACTATCTGTAAT-ACA--TTGTG  1136
      |||||| |||||| | |||||||| |||| ||||||||| |||  | |||
seq2  TCCTGA-GATAAA-GGTTTTAAAT-AAACAATCTGTAATAACAATTGGTG  1145

seq1  ---ATATATTGGAATTTTTAAAAGA  1158
          |||  || |||||||||||||
seq2  GACTTATTCTGCAATTTTTAAAAGA  1170

seq1: chr3_108283862_108284711
seq2: B6Ng01-299P02.g_70_921 (reverse)

seq1  ACTCCCCC-ACA-CCCTACCCTCAG-AAACATCACCTGAGTATTTGTCAG  47
      |||||||| ||| |||||||||||| ||||||||||||||||||||||||
seq2  ACTCCCCCAACACCCCTACCCTCAGAAAACATCACCTGAGTATTTGTCAG  50

seq1  CATCACACGGATGGCAGGACGTTTCTCCTTTGTTTGAGTAGTAGTTGGCT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACGGATGGCAGGACGTTTCTCCTTTGTTTGAGTAGTAGTTGGCT  100

seq1  GGACAAAGCTTGCAGAAAGGGGAGCCCTGCTTGGCAGCGTATGTGCCAGG  147
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAC-AAGCTTGCAGAAAGGGGAGCCCTGCTTGGCAGCGTATGTGCCAGG  149

seq1  CTTGCAGGGGAAACACTCGGAGGTGTAAGCCACCCCTAGGAAGAAAGAAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGGGAAACACTCGGAGGTGTAAGCCACCCCTAGGAAGAAAGAAT  199

seq1  GGTATAGACGATCAAAGCTTGAGCCCAGACACCAAGGCCCTGGGGACCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGACGATCAAAGCTTGAGCCCAGACACCAAGGCCCTGGGGACCAA  249

seq1  ATGCCCATCCCTCCCTAGAAGCCAGGAGTCCAGGAAGCCAGCAGCAGACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATCCCTCCCTAGAAGCCAGGAGTCCAGGAAGCCAGCAGCAGACC  299

seq1  CAGATCCAAGCTGTTTTCTGTACCTGTTATGGCGATGTTTCTAACAAGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCAAGCTGTTTTCTGTACCTGTTATGGCGATGTTTCTAACAAGCA  349

seq1  CGGGCTTGGACACTTTGGACCACACCGAGAAAGCTGTGGTTCTCCAATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTTGGACACTTTGGACCACACCGAGAAAGCTGTGGTTCTCCAATAG  399

seq1  AGGACGTTATTGCCTCTATTTAGCTCAACCTTCAAAAAGGCATAAGGTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTTATTGCCTCTATTTAGCTCAACCTTCAAAAAGGCATAAGGTAG  449

seq1  GTGTTAATTCATCACAAAAATGGGCATCACTAACTTGCCTTTTGTAGCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATTCATCACAAAAATGGGCATCACTAACTTGCCTTTTGTAGCTT  499

seq1  TGTGTTTTTAACCCTCTCCCACTCTTCCCTGATCCTCCACATATGATCCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTAACCCTCTCCCACTCTTCCCTGATCCTCCACATATGATCCG  549

seq1  TGCATCATATGCACTACAAGCATCTCTAATGGAGCGATCAGAACAGGACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATATGCACTACAAGCATCTCTAATGGAGCGATCAGAACAGGACC  599

seq1  AGAGGGGGCTGGCAGTAAGGGAGACTGACGATTGCTCATTCTTCTATGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGCTGGCAGTAAGGGAGACTGACGATTGCTCATTCTTCTATGGT  649

seq1  TTTCCAGAAAACACAGCCTCAAAGCTGGAACGCTCTGGCTCCTGGGATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAAACACAGCCTCAAAGCTGGAACGCTCTGGCTCCTGGGATGA  699

seq1  AGTCATAGGGGCAAACTAGCCACTGTATAGCATCATCTAGCAACCACAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGGGGCAAACTAGCCACTGTATAGCATCATCTAGCAACCACAAA  749

seq1  AAGAGGAATCACTTATGTCTCAGCCTGCCCCCTCCGTTACGGCCCTCGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATCACTTATGTCTCAGCCTGCCCCCTCCGTTACGGCCCTCGGC  799

seq1  CTCTCCTCTGGGATCCCAAGGACGGCTGGTGTGATGCTCACACTGTGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTGGGATCCCAAGGACGGCTGGTGTGATGCTCACACTGTGGAA  849

seq1  TTC  850
      |||
seq2  TTC  852