BAC Information

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BAC

Clone NameB6Ng01-299P20
Chromosome3 (Build37)
Map Location 119,753,486 - 119,938,761
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299P20.bB6Ng01-299P20.g
ACCGA094680GA094681
length1,0791,148
definitionB6Ng01-299P20.b B6Ng01-299P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,753,486 - 119,754,567)(119,937,623 - 119,938,761)
sequence
gaattcttggtatcttaagcacagagaagggcttgtataccaaagaaggg
caagccccaaaggagctaactgactgtggtttgttgcagtgttgtgatgt
gtggtgacacagatgcatcatgccagcaccagggctgttggctttgcatc
tcttgtcattttccctacacggcgctgcttgaatctacacaagcttacag
tcagatttcaacttgaattgtaggaagcaaatagaagtttgtagcaggaa
acaaggaaaagactggagctatgaagtcaccgcccatccgccacccccaa
ataaaatctctaccttgactaagagtctgctgtttgatgctcctctgctt
agtttctccacagattcgaacccccggctttcctctccgggtaggttaga
gagaaggattacgggatctctgaattcttctgcaagctcctccgtgcagc
tgaccagatgctgcattgccttcccgcctcgctgactacgtagcttctga
agcccatgacccttgtccagtctcctgactcccttgttttatctgttttc
tagattcagaacctcatgggcatcccagcatgagagctttcacaacccat
cctgcctccatcaaaccctgtccagcaagtcatttatttctgatgtgaca
acaaatcatgccactgacctatattgagtaccatgctctcctaatgatca
ataccagcattcacagcttgaaggaacatctgcgacaaaacagtattgga
aaggtcaacgcctgttcttggagatggattcgtttcactttttccttttt
tcacttgggacagtttctatacaaactgggggcttcctgaagagagcaat
tatatgttctgctgttttgcatgaggtatcagcatctcctaataattctt
tctgaaaaaatatttataaagtatagtattaaacagaagaatacgtaagg
gatctggagaaaaaagatacatgggctgtctgaggtgaattttaatttct
ttttcagcagatttttttttttattttacatctgtttaatagtccctgga
aaataaaaagaagtgaaacgtgtcagcaa

gaattcatagcagtcccacttgcccctccatgcaacaacactgaacagcc
aattggaatccctggcctcagcccttcattgcatcatcatggtttatagt
ccataacgaggaaaatatagaaaagagccataatgacctgctatgtctga
cctaccatctctccttccagggctttgcctaatgagtttgcttcttctct
acatggggcaaaagcaaagagagcacgctctggagttgccctcctaaggc
ctgaccccaggtccccagtccataccatgtcctagccatcaccacagtag
gcagccctctcttgtaggataagcagtcatttctgtaaggtctcccacaa
acaaggcttgttgatgtcagcccaaaagtggcttcccactgtggtgagac
atcccagtagcttttataaagcattactgtcttccttcctggagctgaca
ggtaacttgggccctggaaagagtctgataaattaaagggtactaaatgg
ggaaaagttgttgtgaaggaggggttttgttcccagtttgcagaaatgga
ttgtctttctctcagattgttcataatcctggggaatttgataatcaatt
tccatttccttcacataactaatccccatcaaagtcaaattaagtgatta
ttggaaagtgttgtatggtattttttgtttttgtttttcattttttttgt
tttttttttatttctactatcctctcatcttttcgactataatcaaacat
gtggcatttataatatacctttacctatattttaatgaataaacccaagc
aaatatactgctacattttttaaacaaattgcctttgagattggcatgcc
aagaaatctactacataccttcacaacgttatttgttcttgagggcactt
acttattttgttaataacaaattaagagtgaaaaatacagtcccttaaag
gagttaggttaagttctaagaaagactgtttcaaatgcacttgaaaaagg
ggctgacagatggctgaaccagggttcagtcctgtcaagcatgaaaaact
gaatcctgtattcctgaggccgtgtaagaagcgggtggaaagaattcact
tctgctaagcttgtctctttggcctcagaccattgcccatggtaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119753486_119754567
seq2: B6Ng01-299P20.b_48_1126

seq1  GAATTCTTGGTATCTTAAGCACAGAGAAGGGCTTGTATACCAAAGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTATCTTAAGCACAGAGAAGGGCTTGTATACCAAAGAAGGG  50

seq1  CAAGCCCCAAAGGAGCTAACTGACTGTGGTTTGTTGCAGTGTTGTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCAAAGGAGCTAACTGACTGTGGTTTGTTGCAGTGTTGTGATGT  100

seq1  GTGGTGACACAGATGCATCATGCCAGCACCAGGGCTGTTGGCTTTGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACACAGATGCATCATGCCAGCACCAGGGCTGTTGGCTTTGCATC  150

seq1  TCTTGTCATTTTCCCTACACGGCGCTGCTTGAATCTACACAAGCTTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATTTTCCCTACACGGCGCTGCTTGAATCTACACAAGCTTACAG  200

seq1  TCAGATTTCAACTTGAATTGTAGGAAGCAAATAGAAGTTTGTAGCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTCAACTTGAATTGTAGGAAGCAAATAGAAGTTTGTAGCAGGAA  250

seq1  ACAAGGAAAAGACTGGAGCTATGAAGTCACCGCCCATCCGCCACCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAAAGACTGGAGCTATGAAGTCACCGCCCATCCGCCACCCCCAA  300

seq1  ATAAAATCTCTACCTTGACTAAGAGTCTGCTGTTTGATGCTCCTCTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCTCTACCTTGACTAAGAGTCTGCTGTTTGATGCTCCTCTGCTT  350

seq1  AGTTTCTCCACAGATTCGAACCCCCGGCTTTCCTCTCCGGGTAGGTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCCACAGATTCGAACCCCCGGCTTTCCTCTCCGGGTAGGTTAGA  400

seq1  GAGAAGGATTACGGGATCTCTGAATTCTTCTGCAAGCTCCTCCGTGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGATTACGGGATCTCTGAATTCTTCTGCAAGCTCCTCCGTGCAGC  450

seq1  TGACCAGATGCTGCATTGCCTTCCCGCCTCGCTGACTACGTAGCTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGATGCTGCATTGCCTTCCCGCCTCGCTGACTACGTAGCTTCTGA  500

seq1  AGCCCATGACCCTTGTCCAGTCTCCTGACTCCCTTGTTTTATCTGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGACCCTTGTCCAGTCTCCTGACTCCCTTGTTTTATCTGTTTTC  550

seq1  TAGATTCAGAACCTCATGGGCATCCCAGCATGAGAGCTTTCACAACCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCAGAACCTCATGGGCATCCCAGCATGAGAGCTTTCACAACCCAT  600

seq1  CCTGCCTCCATCAAACCCTGTCCAGCAAGTCATTTATTTCTGATGTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCATCAAACCCTGTCCAGCAAGTCATTTATTTCTGATGTGACA  650

seq1  ACAAATCATGCCACTGACCTATATTGAGTACCATGCTCTCCTAATGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCATGCCACTGACCTATATTGAGTACCATGCTCTCCTAATGATCA  700

seq1  ATACCAGCATTCACAGCTTGAAGGAACATCTGCGACAAAACAGTATTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGCATTCACAGCTTGAAGGAACATCTGCGACAAAACAGTATTGGA  750

seq1  AAGGTCAACGCCTGTTCTTGGAGATGGATTCGTTTCACTTTTTCCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAACGCCTGTTCTTGGAGATGGATTCGTTTCACTTTTTCCTTTTT  800

seq1  TCACTT-GGACAGTTTCTATACAAACT-GGGGCTTCCTGAAGAGAGCAAT  848
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  TCACTTGGGACAGTTTCTATACAAACTGGGGGCTTCCTGAAGAGAGCAAT  850

seq1  TATATGTTCTGCTGTTTTGCATGAGGTATCAGCATCTCCTAATAATTCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTCTGCTGTTTTGCATGAGGTATCAGCATCTCCTAATAATTCTT  900

seq1  TCTGAAAAAATATTTATAAAGTATAAGTATTAAACAGAAGAATACGTAAA  948
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  TCTGAAAAAATATTTATAAAGTAT-AGTATTAAACAGAAGAATACGT-AA  948

seq1  GGAATCTGGAGAAAAAAAGATACATGGGCTGTCTGAGGGTGAATTTTAAT  998
      || |||||||| |||||||||||||||||||||||| |||||||||||||
seq2  GGGATCTGGAG-AAAAAAGATACATGGGCTGTCTGA-GGTGAATTTTAAT  996

seq1  TTCTTTTTTCAGGCAGATTTTTTTTTAT-TTTTACATCTGTTTTAATAGT  1047
      ||| ||||||| |||||||||||||| | ||||||||||| |||||||||
seq2  TTC-TTTTTCA-GCAGATTTTTTTTTTTATTTTACATCTG-TTTAATAGT  1043

seq1  CCCTGGAAAAATAAAAG-AGTG-AACGTGTTCAGCAA  1082
      ||||||||||  ||||| |||| |||||| |||||||
seq2  CCCTGGAAAATAAAAAGAAGTGAAACGTG-TCAGCAA  1079


seq1: chr3_119937623_119938761
seq2: B6Ng01-299P20.g_69_1216 (reverse)

seq1  GTGTGTACCATGGCATGTGTTTGGAGGCCAAAG-GACAA-CTTTGCAG-A  47
      |||| ||||||||    || |  |||||||||| ||||| ||| |||| |
seq2  GTGT-TACCATGGGCAATGGTCTGAGGCCAAAGAGACAAGCTTAGCAGAA  49

seq1  GTGAATTCTTCCCACCCGC-TCTTACACGGCCTCCAAAGATACAG--ATC  94
      |||||||||| |||||||| ||||||||||||| ||   ||||||   ||
seq2  GTGAATTCTTTCCACCCGCTTCTTACACGGCCT-CAGGAATACAGGATTC  98

seq1  AGGTTTTCATGCTTTGACAGGACTG-ACCCTTGTTCAGCCATCTTGTCAG  143
      || ||||||||| |||||||||||| ||||| ||||||||||| ||||||
seq2  AGTTTTTCATGC-TTGACAGGACTGAACCCTGGTTCAGCCATC-TGTCAG  146

seq1  CCCCTTTT--CAGTGCATTTGAAACAGTCTTTCTTAGAACCTTAACCTAA  191
      ||||||||   |||||||||||||||||||||||||||| ||||||||||
seq2  CCCCTTTTTCAAGTGCATTTGAAACAGTCTTTCTTAGAA-CTTAACCTAA  195

seq1  CT-CTTTAAGGGACTGTATTTTTCACTCTTAATTTGTTATTAACAAAATA  240
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAAGGGACTGTATTTTTCACTCTTAATTTGTTATTAACAAAATA  245

seq1  AGTAAGTGCCCTCAAGAACAAATAACGTTGTG-AGGTATGTAGTAGATTT  289
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTAAGTGCCCTCAAGAACAAATAACGTTGTGAAGGTATGTAGTAGATTT  295

seq1  CTTGGCATGCCAATCTCAAAGGCAATTTGTTT-AAAAATGTAGCAGTATA  338
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTGGCATGCCAATCTCAAAGGCAATTTGTTTAAAAAATGTAGCAGTATA  345

seq1  TTTGCTT-GGTTTATTCATTAAAATATAGGTAAAGGTATATTATAAATGC  387
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGGGTTTATTCATTAAAATATAGGTAAAGGTATATTATAAATGC  395

seq1  CACATGTTTGATTATAGTCGAAAAGATGAGAGGATAGTAGAAAT-AAAAA  436
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACATGTTTGATTATAGTCGAAAAGATGAGAGGATAGTAGAAATAAAAAA  445

seq1  AAAACAAAAAAAATGAAAAACAAAAACAAAAAATACCATACAACACTTTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAATGAAAAACAAAAACAAAAAATACCATACAACACTTTC  495

seq1  CAATAATCACTTAATTTGACTTTGATGGGGATTAGTTATGTGAAGGAAAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCACTTAATTTGACTTTGATGGGGATTAGTTATGTGAAGGAAAT  545

seq1  GGAAATTGATTATCAAATTCCCCAGGATTATGAACAATCTGAGAGAAAGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGATTATCAAATTCCCCAGGATTATGAACAATCTGAGAGAAAGA  595

seq1  CAATCCATTTCTGCAAACTGGGAACAAAACCCCTCCTTCACAACAACTTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCATTTCTGCAAACTGGGAACAAAACCCCTCCTTCACAACAACTTT  645

seq1  TCCCCATTTAGTACCCTTTAATTTATCAGACTCTTTCCAGGGCCCAAGTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTTAGTACCCTTTAATTTATCAGACTCTTTCCAGGGCCCAAGTT  695

seq1  ACCTGTCAGCTCCAGGAAGGAAGACAGTAATGCTTTATAAAAGCTACTGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCAGCTCCAGGAAGGAAGACAGTAATGCTTTATAAAAGCTACTGG  745

seq1  GATGTCTCACCACAGTGGGAAGCCACTTTTGGGCTGACATCAACAAGCCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTCACCACAGTGGGAAGCCACTTTTGGGCTGACATCAACAAGCCT  795

seq1  TGTTTGTGGGAGACCTTACAGAAATGACTGCTTATCCTACAAGAGAGGGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGGGAGACCTTACAGAAATGACTGCTTATCCTACAAGAGAGGGC  845

seq1  TGCCTACTGTGGTGATGGCTAGGACATGGTATGGACTGGGGACCTGGGGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTGTGGTGATGGCTAGGACATGGTATGGACTGGGGACCTGGGGT  895

seq1  CAGGCCTTAGGAGGGCAACTCCAGAGCGTGCTCTCTTTGCTTTTGCCCCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTAGGAGGGCAACTCCAGAGCGTGCTCTCTTTGCTTTTGCCCCA  945

seq1  TGTAGAGAAGAAGCAAACTCATTAGGCAAAGCCCTGGAAGGAGAGATGGT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGAAGAAGCAAACTCATTAGGCAAAGCCCTGGAAGGAGAGATGGT  995

seq1  AGGTCAGACATAGCAGGTCATTATGGCTCTTTTCTATATTTTCCTCGTTA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGACATAGCAGGTCATTATGGCTCTTTTCTATATTTTCCTCGTTA  1045

seq1  TGGACTATAAACCATGATGATGCAATGAAGGGCTGAGGCCAGGGATTCCA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTATAAACCATGATGATGCAATGAAGGGCTGAGGCCAGGGATTCCA  1095

seq1  ATTGGCTGTTCAGTGTTGTTGCATGGAGGGGCAAGTGGGACTGCTATGAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGTTCAGTGTTGTTGCATGGAGGGGCAAGTGGGACTGCTATGAA  1145

seq1  TTC  1139
      |||
seq2  TTC  1148


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