BAC Information

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BAC

Clone NameB6Ng01-300A11
Chromosome3 (Build37)
Map Location 34,336,542 - 34,515,163
singlet/doubletdoublet
Overlap geneEG665636, EG622074
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneSox2, LOC100041108, LOC665655, Ube2l3-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300A11.bB6Ng01-300A11.g
ACCGA094708GA094709
length1,1501,136
definitionB6Ng01-300A11.b B6Ng01-300A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,336,542 - 34,337,690)(34,514,029 - 34,515,163)
sequence
gaattccttaaccttccatggccttgttctctcctcagtggacctggggt
ttaggctgtaatgaatagtcactaaacttaatcgtacgtaaagataaatg
gaaagctgctttaaaggcactttcctgggacctgcctttaggattctggg
tcagttgatttgggttggataccaacattctttgaccatgactttagatg
cagtcttatctatcaagtactaaactcccagatgaactcgggaatcccaa
agctgcaaaaattctaaggtccaaactgaattattcatacgctggccaag
caagcaatgcagactttatataaacataaatataaggctaaaataagatt
aaacaacgaatatctgttgtgcatgtttaagttcagggaagcctttctaa
gtattaattcattgagacacaagcaatatcagcaaaaattaatatattga
tttcattagtgcagaagttgagccacatagaaacaaagtcattggctcaa
cactggccagtgggatgtgatgaagaggggagtttggcaagtgcaccaag
gtgcacagaagacaggcctgagctaaaagaagctaacaagtctacatgtt
gttgaattctcactgaagactagcaagggcctgacttctcacataatatg
acacaattgcatcttgtattgtaccatgattttcttatcccttcatctgg
gagtaaatcttcctgatcttggcttttaagaagagcatcgctttgaacat
gaacacgtggctgtcttctcaacataccaagcttagttctagaagccagg
cacagaaaggcagatatcgcatgacctaatttatgagttgtatctaagaa
agatgagatcacagaagtagagaatcatgtactggttcagaggctagagg
acaggggcagatgcagaaaaaaatacagtgagccaagcccacaacttgag
tgacacagagggataaagtggtcatcttcctcaaaatatgttgtgtacat
gtgaggaaatatcatatattatatcagtaacatattactgatgaaaatct
aaagaattattcctactcagaaacattcctgctagattagaataaaaaat
aaaccctagtttagtggagaaagcactaaatctacttataaaatttgacc


gaattcaggtcctctgcctttcacagaaaactccactacacaggagggtg
tggctccagatgggagaaaaggtgggaaggaactcagaagaattggggga
gcgaaaactctaatcacactctattgtatgaaaaaacaaacaactctttt
caataggagaaaaatagaaaaacaaaaccaaaaagcccaaagtatctaag
tgtgtaacccaggctgggctagaactcacaatgttcccactgcaggcttc
tgagtactgagtgtgggttaccaggtatgtaccatgtgcactgtcagatc
agccttcaggagctccacgagagcttgcttccccttctctttagtttaca
cgacttgatttccccctgtgtgaacatactattctaaggacataaaggat
ttgcctgggtatcttggtgacttatttttggatgttccccatggttccag
tcagagtatttggcacgcactgtggatgtgctatgtaggacaccccagct
gtgcgtcagtgcgtgaggtacggcactcaccagcgatctgcttggtatgc
gctccgcctctcggagtgtgtggtcttgaaaactgtgaggcaggctggaa
ttctttatggataaagtcggcgacgcacagttgcttcaaattgtaactgc
ctctctgacagtggaaagaaacggtggctgtaagcagttggggtggcggt
cacctgtcatcctcacactgggaagtttgaggcaggggatcaagagttca
agggtgacctgcgctttatgagagagtctcttaacttaaaaaataaataa
atagataaaaacataaaaaatgaataaaaagggaaacgccaaagaaagcg
tcatgatatgcacagaacaaggccagctcccttttctatgtgttgtttga
aagtctaaaacacattgaaaatctcttttttgattcaacccaggtttttc
aagtcttatgttgttcctccacagcctagtgaggggaaaacttgtgcgta
cctgctaagtgcactgcacagcaactgttaataaaaattctggaaataag
ctagaaatgtactttaatttatccaactctgagcatggagaataggcggt
tagacctctcgctctccttatctttcttctcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34336542_34337690
seq2: B6Ng01-300A11.b_43_1192

seq1  GAATTCCTTAACCTTCCATGGCCTTGTTCTCTCCTCAGTGGACCTGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAACCTTCCATGGCCTTGTTCTCTCCTCAGTGGACCTGGGGT  50

seq1  TTAGGCTGTAATGAATAGTCACTAAACTTAATCGTACGTAAAGATAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTGTAATGAATAGTCACTAAACTTAATCGTACGTAAAGATAAATG  100

seq1  GAAAGCTGCTTTAAAGGCACTTTCCTGGGACCTGCCTTTAGGATTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGCTTTAAAGGCACTTTCCTGGGACCTGCCTTTAGGATTCTGGG  150

seq1  TCAGTTGATTTGGGTTGGATACCAACATTCTTTGACCATGACTTTAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGATTTGGGTTGGATACCAACATTCTTTGACCATGACTTTAGATG  200

seq1  CAGTCTTATCTATCAAGTACTAAACTCCCAGATGAACTCGGGAATCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTATCTATCAAGTACTAAACTCCCAGATGAACTCGGGAATCCCAA  250

seq1  AGCTGCAAAAATTCTAAGGTCCAAACTGAATTATTCATACGCTGGCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAAAATTCTAAGGTCCAAACTGAATTATTCATACGCTGGCCAAG  300

seq1  CAAGCAATGCAGACTTTATATAAACATAAATATAAGGCTAAAATAAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATGCAGACTTTATATAAACATAAATATAAGGCTAAAATAAGATT  350

seq1  AAACAACGAATATCTGTTGTGCATGTTTAAGTTCAGGGAAGCCTTTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACGAATATCTGTTGTGCATGTTTAAGTTCAGGGAAGCCTTTCTAA  400

seq1  GTATTAATTCATTGAGACACAAGCAATATCAGCAAAAATTAATATATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATTCATTGAGACACAAGCAATATCAGCAAAAATTAATATATTGA  450

seq1  TTTCATTAGTGCAGAAGTTGAGCCACATAGAAACAAAGTCATTGGCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAGTGCAGAAGTTGAGCCACATAGAAACAAAGTCATTGGCTCAA  500

seq1  CACTGGCCAGTGGGATGTGATGAAGAGGGGAGTTTGGCAAGTGCACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCAGTGGGATGTGATGAAGAGGGGAGTTTGGCAAGTGCACCAAG  550

seq1  GTGCACAGAAGACAGGCCTGAGCTAAAAGAAGCTAACAAGTCTACATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGAAGACAGGCCTGAGCTAAAAGAAGCTAACAAGTCTACATGTT  600

seq1  GTTGAATTCTCACTGAAGACTAGCAAGGGCCTGACTTCTCACATAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTCTCACTGAAGACTAGCAAGGGCCTGACTTCTCACATAATATG  650

seq1  ACACAATTGCATCTTGTATTGTACCATGATTTTCTTATCCCTTCATCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTGCATCTTGTATTGTACCATGATTTTCTTATCCCTTCATCTGG  700

seq1  GAGTAAATCTTCCTGATCTTGGCTTTTAAGAAGAGCATCGCTTTGAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATCTTCCTGATCTTGGCTTTTAAGAAGAGCATCGCTTTGAACAT  750

seq1  GAACACGTGGCTGTCTTCTCAACATACCAAGCTTAGTTCTAGAAGCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGTGGCTGTCTTCTCAACATACCAAGCTTAGTTCTAGAAGCCAGG  800

seq1  CACAGAAAGGCAGATATCGCATGACCTAATTTATGAGTTGTATCTAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGGCAGATATCGCATGACCTAATTTATGAGTTGTATCTAAGAA  850

seq1  AGATGAGATCACAGAAGTAGAGAATCATGTACTGGTTCAGAGGCTAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGATCACAGAAGTAGAGAATCATGTACTGGTTCAGAGGCTAGAGG  900

seq1  ACAGGGGCAGATGCAGAAAAAAATACAGTGAGCCAAGCCCACAACTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGCAGATGCAGAAAAAAATACAGTGAGCCAAGCCCACAACTTGAG  950

seq1  TGACACAGAGGGATAAAGGTGGTCATCTTCCTCAAAATATGTTGTGTACA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGACACAGAGGGATAAA-GTGGTCATCTTCCTCAAAATATGTTGTGTACA  999

seq1  TGTGAGGAAATATCATAATATTAATATCAGTAACATA-TACTGATGAAAA  1049
      |||||||||||||||| ||||| |||||||||||||| ||||||||||||
seq2  TGTGAGGAAATATCAT-ATATT-ATATCAGTAACATATTACTGATGAAAA  1047

seq1  TCTAAAGAATTATTCCTACTCAG-AACATTCCTGCTAGATTAGA--TAAA  1096
      ||||||||||||||||||||||| ||||||||||||||||||||   |||
seq2  TCTAAAGAATTATTCCTACTCAGAAACATTCCTGCTAGATTAGAATAAAA  1097

seq1  AATAAAACCTAGTTTAGT-GAGAAAGCACTTAAATCTACTTATAAAATTT  1145
      |||||| ||||||||||| |||||||||| ||||||||||||||||||||
seq2  AATAAACCCTAGTTTAGTGGAGAAAGCAC-TAAATCTACTTATAAAATTT  1146

seq1  GACC  1149
      ||||
seq2  GACC  1150


seq1: chr3_34514029_34515163
seq2: B6Ng01-300A11.g_67_1202 (reverse)

seq1  GAGAGAGAGAGAGAAAGA----GAGAGAGAGAGGTCTAACCCGACTATTC  46
      |||| ||||| |||||||    ||||| ||||||||||| ||| ||||||
seq2  GAGA-AGAGA-AGAAAGATAAGGAGAGCGAGAGGTCTAA-CCGCCTATTC  47

seq1  TCCATGCTCAGAGTTGAATAAA-TAAAGTACATTTCTAGCTTTATTTCCA  95
      |||||||||||||||| ||||| ||||||||||||||||| |||||||||
seq2  TCCATGCTCAGAGTTGGATAAATTAAAGTACATTTCTAGC-TTATTTCCA  96

seq1  GAATTTTTATAAACAGTTGCTGTGCAGTGCACTTAGCAGGTACGCACAAG  145
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTATTAACAGTTGCTGTGCAGTGCACTTAGCAGGTACGCACAAG  146

seq1  TTTTCCCCTCACTAGGCCTGTGGAGGAACAACAT-AGACTTGAAAAACCT  194
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TTTTCCCCTCACTAGG-CTGTGGAGGAACAACATAAGACTTGAAAAACCT  195

seq1  GGGTTGAATC-AAAAAGAGATTTTTCAATGTGTTTTAGACTTTCAAACAA  243
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  GGGTTGAATCAAAAAAGAGA-TTTTCAATGTGTTTTAGACTTTCAAACAA  244

seq1  CACATAGAAAAGGGAGCTGGCCTTGTTCTGTGCATATCATGACGCTTTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAAAAGGGAGCTGGCCTTGTTCTGTGCATATCATGACGCTTTCT  294

seq1  TTGGCGTTTCCCTTTTTATTCATTTTTTATGTTTTTATCTATTTATTTAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGTTTCCCTTTTTATTCATTTTTTATGTTTTTATCTATTTATTTAT  344

seq1  TTTTTAAGTTAAGAGACTCTCTCATAAAGCGCAGGTCACCCTTGAACTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTTAAGAGACTCTCTCATAAAGCGCAGGTCACCCTTGAACTCT  394

seq1  TGATCCCCTGCCTCAAACTTCCCAGTGTGAGGATGACAGGTGACCGCCAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCCTGCCTCAAACTTCCCAGTGTGAGGATGACAGGTGACCGCCAC  444

seq1  CCCAACTGCTTACAGCCACCGTTTCTTTCCACTGTCAGAGAGGCAGTTAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGCTTACAGCCACCGTTTCTTTCCACTGTCAGAGAGGCAGTTAC  494

seq1  AATTTGAAGCAACTGTGCGTCGCCGACTTTATCCATAAAGAATTCCAGCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAGCAACTGTGCGTCGCCGACTTTATCCATAAAGAATTCCAGCC  544

seq1  TGCCTCACAGTTTTCAAGACCACACACTCCGAGAGGCGGAGCGCATACCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACAGTTTTCAAGACCACACACTCCGAGAGGCGGAGCGCATACCA  594

seq1  AGCAGATCGCTGGTGAGTGCCGTACCTCACGCACTGACGCACAGCTGGGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCGCTGGTGAGTGCCGTACCTCACGCACTGACGCACAGCTGGGG  644

seq1  TGTCCTACATAGCACATCCACAGTGCGTGCCAAATACTCTGACTGGAACC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTACATAGCACATCCACAGTGCGTGCCAAATACTCTGACTGGAACC  694

seq1  ATGGGGAACATCCAAAAATAAGTCACCAAGATACCCAGGCAAATCCTTTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAACATCCAAAAATAAGTCACCAAGATACCCAGGCAAATCCTTTA  744

seq1  TGTCCTTAGAATAGTATGTTCACACAGGGGGAAATCAAGTCGTGTAAACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTAGAATAGTATGTTCACACAGGGGGAAATCAAGTCGTGTAAACT  794

seq1  AAAGAGAAGGGGAAGCAAGCTCTCGTGGAGCTCCTGAAGGCTGATCTGAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGGGGAAGCAAGCTCTCGTGGAGCTCCTGAAGGCTGATCTGAC  844

seq1  AGTGCACATGGTACATACCTGGTAACCCACACTCAGTACTCAGAAGCCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACATGGTACATACCTGGTAACCCACACTCAGTACTCAGAAGCCTG  894

seq1  CAGTGGGAACATTGTGAGTTCTAGCCCAGCCTGGGTTACACACTTAGATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAACATTGTGAGTTCTAGCCCAGCCTGGGTTACACACTTAGATA  944

seq1  CTTTGGGCTTTTTGGTTTTGTTTTTCTATTTTTCTCCTATTGAAAAGAGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCTTTTTGGTTTTGTTTTTCTATTTTTCTCCTATTGAAAAGAGT  994

seq1  TGTTTGTTTTTTCATACAATAGAGTGTGATTAGAGTTTTCGCTCCCCCAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTCATACAATAGAGTGTGATTAGAGTTTTCGCTCCCCCAA  1044

seq1  TTCTTCTGAGTTCCTTCCCACCTTTTCTCCCATCTGGAGCCACACCCTCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGAGTTCCTTCCCACCTTTTCTCCCATCTGGAGCCACACCCTCC  1094

seq1  TGTGTAGTGGAGTTTTCTGTGAAAGGCAGAGGACCTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTGGAGTTTTCTGTGAAAGGCAGAGGACCTGAATTC  1136


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