BAC Information

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BAC

Clone NameB6Ng01-300I02
Chromosome3 (Build37)
Map Location 108,610,564 - 108,610,967
singlet/doubletsinglet
Overlap geneStxbp3a
Upstream geneLOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik
Downstream geneFndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3, Ntng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300I02.bB6Ng01-300I02.g
ACCGA095065GA095066
length5971,213
definitionB6Ng01-300I02.b B6Ng01-300I02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ttaaaaaattgaggagggatggccttttgggcattcctgctgtttgttgt
gtctggaggaatgctttggtggatggcatgtatgtgaaggttgtacaggg
atgataaacaacttagtaaagactatggcagccttggaagcaggaacatc
cccccaatattggctcaacatgctggttaaggaagcaaggacaggataga
gcctcacatacacatatcaaccaaagacagtatggggaaagtgagttgtc
actacattgatgggtaaggatttggaatggatgggggtgacctaagacag
atgctgatcacagatcaactaatacaacaaaaagggggagatgcaggaag
caggtacggccacatgggcaggatggcgctctgaaacattgccagaccct
gtgaaccccacaagtttactgccttgccagaatgtgctcaatgaaactac
atgtgtaagctgcctaccaagttaggttattcctagtgatcgggatctgt
cagcctatctgtgactgacctgagctctgacctgagctcctgcccggttc
atgcattgtgtgtttgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgt
gaattcactcgtagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaatgaatcaggagcagtcacgccatatcaggtgctgaaatgtc
acgctgtgggttataaaagcagcgacatttttctggttcgggatcttcct
gagaagcaagcaataaagctcttgccgcggaaaattctggtttgttgcat
ctttctcgccggtcaagccggatgcaataagtggtgacgaaacccggaaa
ctgtcatcacaccagcgcaaggaagatacttcgtttgcggggcagaatca
gaaccgtgggacaaaaggctctacaagttacgtacaatcttgaaatttct
ccagagttagaagcccttttgattgtttgcacggcgattacacttttcct
ttcagttttgttttgtttccaccactggaactgctgactggttcttagtc
gtggtcaggcctggacagcggcagtatgggaatctcccattctatagtag
tggccttatgcttggtcctgaagcagtgtggcctaaaaatcgccacgaag
accttagagggatttgtcagagagatagacggtgttgcaccatggtatgc
ttgctcattgtcattaactgtcgcctcttgggacaaattgaaaggagatc
tagttagtgaacagcagaaaggcaaacttaaagcagggattaggccgcta
tggaaattggtgaaatcgtgtttaacagatgagaattgtcagaaaatggt
agaagcaggtcagaaagttctggacgaaattcaagaaagtctatcagagg
tagagcggggagagagagtaaaagtagagaggaaacaaagtgcactgaag
aatttaggcctttccacaggccttgagactgagaaaaaaggaatgtcagg
aaaatatctgggggagagattagaaaagggagatcgagctggagaggcac
ataaggaaaggagcctctacctgccactagatgagtttaagcagctagct
gtcagtagctcagaatcagataagggaacttagcctcctatggaggaaac
agacttagaagaagaaagtgacacggcctgtggaggggagaaagaataca
agttcggatgaagacgagtatcagtacagaaattacccggaggccaagta
agaccaatgtcaatcgttgccacggctctcggaaaattgtacaaactaag
taggggctctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108610564_108610967
seq2: B6Ng01-300I02.b_598_645 (reverse)

seq1  ACACACACACACACACACACACTCCACATGCATGGAGGGGCACATGTGTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGTACACACACACACACACACACACACACACTCCACATGCATGGAGGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGCACATGCGTACCTGCATTTACCCTTCCCCGCTTCTCTCTGTCTCTCTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCACACACACACACACACACTCCACATGCATGGAGGGGGCACATGTGT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTGCATTTACCCTTCCCCGCTTCTCTCTGTCTCTCTCACACACACACA  250
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACAAACACACACACACACACACACACACACACACACCCTCC  300
         ||||||||| |||||||||||| |||||||||| |||||||      
seq2  ---ACACACACACACACACACACACTCACACACACAAACACACA------  41

seq1  ACATGCATGGAGGAGGCACATGCGTACCTGCATTTACCCTTCCCCGCTTT  350
        |||||||                                         
seq2  --ATGCATG-----------------------------------------  48

seq1  TCTCTGTCTCTCACACACACACACAAACACACACACACACCCTCCACATG  400
                                                        
seq2  --------------------------------------------------  48

seq1  CATG  404
          
seq2  ----  48