BAC Information

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BAC

Clone NameB6Ng01-300M12
Chromosome3 (Build37)
Map Location 132,382,793 - 132,497,472
singlet/doubletdoublet
Overlap geneA630047E20Rik
Upstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1
Downstream geneLOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300M12.bB6Ng01-300M12.g
ACCGA095268GA095269
length1,0491,146
definitionB6Ng01-300M12.b B6Ng01-300M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,382,793 - 132,383,870)(132,496,300 - 132,497,472)
sequence
gaattccagtaacaggttacaaaggataaaacctgtgggaggaggcaatg
aactaactaagtggcataaaattttatctgagtcattaattccttaccaa
gactatacactacagctgacaaggaatttggggcagtgttaagtgtggtc
tgaagactgaatttatacttttttttttttttttggttttccgagacagg
gtttctctgtgtagccttggctgtcctggagctcactttgtagaccaggc
tgggctcgaactcagaaatccgcctgcctctgcctcccgagtgctgggat
taaaggcatgcgccaccacacccagcttgaatttatactttttatctcca
gagatatgtgaggtcattctccagaccttatgtaattaaaataaattaat
tttgtaaccatgagataacacagcaccttcaaaaattccttggatttttt
tttttatatctttatgtaagttgctataatttagtgcctgtgtggaactg
aactgagtggttaagcctctgcttttgtcaaagcatataaggaaagttaa
ttctttaaataaaaacaagttttagtagcttaaagaccaaaactatatca
tgatatttggaaatttttgtcattgtatttccccagttattgtgatagat
taaagactggtgtttactcatctggctttccttttctcttaggctgtgta
gatgatactataatagttctcgctgaggagcatgggtgtctggacattat
caaggttcgttgtacatgtgtgctattccaacagactatctgagcctggg
tcatctttaaagaacaaaagtaatcatctcccagttttcgaggctggata
tgtcatgataaagtgcccagaggctcagcttctgatgagggaaggacact
cacagcagagaagcagctcttcacgcagtggatacggaagtgtgagatcc
attccagatgagcccgtgggacccatcactctcatagcacctcttttttg
ttgttgctttatttatatctgagactcatacagtgtctgacatatcacc
gaattcaccctttctctcaagtcttcatcacagcagcagcaattctgact
agcaccatgctgtcttgcctggatcattgaagccatttctgggacagttc
ctgaaagtcttggtcagtagatctggacatcttatgaacaacaatgagaa
gcatatgagatctgataagggtcagagcaagacagtggaatgacacatca
aatacggcactgacttcttcccatcaccacatggccaatgtaattctgaa
cgccattcttcagtcaaatctttcctacgttcttcctgtaactgaggtaa
atattctctccctgttatttttgtattcttttttttttgtatacttactg
aagttcaattgtacgttataaaatgtgaagtgagttttctcagaaatgat
acatagtgacaactaagaagtggctactttttcttcctttgaaagttact
cagagggctggagagatggctcagcagttaagagcactgactgctcttct
gaaggtcctgagttcaaatcccagcaaccacatggtggctcacacccatc
cttaatgagatctgatgccctcttctggtgtgtctgaagacagagacagt
gtactcacatacataaaataaataaataaaacttaaaaaaaaaaaagaag
aaagaaagtcactcagagctgaaagcagcggctacaaagccaggaccggg
aggctatggcctggtagtcacatcatacgctgacatagacatctgtgaaa
ggcacaggacatagcagggaccccaggagtggccctcctgctgctatgac
acagtatcacagctgaggtactttgtgataagattacttttaaacagttc
tggaacaggggaagttcagtagtcagttcaatactgaggaataggggaag
ttctacatcagtgagaacctctcgtgcatcttaacacggcagaaggtcca
acctccttctctcaggagcctctgtcatgatatcaacccaacactagtgc
actttctcatgatgagcactcacaacatacaatctgtctagatacagcat
tgactctccactgtctttctgccttgacccacccttatgtctaattccca
tatgcctggggtactaagctctaatgtctaagtatacaagtgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132382793_132383870
seq2: B6Ng01-300M12.b_50_1098

seq1  GAATTCCAGTAACAGGTTACAAAGGATAAAACCTGTGGGAGGAGGCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAACAGGTTACAAAGGATAAAACCTGTGGGAGGAGGCAATG  50

seq1  AACTAACTAAGTGGCATAAAATTTTATCTGAGTCATTAATTCCTTACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTAAGTGGCATAAAATTTTATCTGAGTCATTAATTCCTTACCAA  100

seq1  GACTATACACTACAGCTGACAAGGAATTTGGGGCAGTGTTAAGTGTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATACACTACAGCTGACAAGGAATTTGGGGCAGTGTTAAGTGTGGTC  150

seq1  TGAAGACTGAATTTATACTTTTTTTTTTTTTTTTGGTTTTCCGAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTGAATTTATACTTTTTTTTTTTTTTTTGGTTTTCCGAGACAGG  200

seq1  GTTTCTCTGTGTAGCCTTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGCCTTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGC  250

seq1  TGGGCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGAT  300

seq1  TAAAGGCATGCGCCACCACACCCAGCTTGAATTTATACTTTTTATCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATGCGCCACCACACCCAGCTTGAATTTATACTTTTTATCTCCA  350

seq1  GAGATATGTGAGGTCATTCTCCAGACCTTATGTAATTAAAATAAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATGTGAGGTCATTCTCCAGACCTTATGTAATTAAAATAAATTAAT  400

seq1  TTTGTAACCATGAGATAACACAGCACCTTCAAAAATTCCTTGGATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACCATGAGATAACACAGCACCTTCAAAAATTCCTTGGATTTTTT  450

seq1  TTTTTATATCTTTATGTAAGTTGCTATAATTTAGTGCCTGTGTGGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATCTTTATGTAAGTTGCTATAATTTAGTGCCTGTGTGGAACTG  500

seq1  AACTGAGTGGTTAAGCCTCTGCTTTTGTCAAAGCATATAAGGAAAGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTGGTTAAGCCTCTGCTTTTGTCAAAGCATATAAGGAAAGTTAA  550

seq1  TTCTTTAAATAAAAACAAGTTTTAGTAGCTTAAAGACCAAAACTATATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAATAAAAACAAGTTTTAGTAGCTTAAAGACCAAAACTATATCA  600

seq1  TGATATTTGGAAATTTTTGTCATTGTATTTCCCCAGTTATTGTGATAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTGGAAATTTTTGTCATTGTATTTCCCCAGTTATTGTGATAGAT  650

seq1  TAAAGACTGGTGTTTACTCATCTGGCTTTCCTTTTCTCTTAGGCTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTGGTGTTTACTCATCTGGCTTTCCTTTTCTCTTAGGCTGTGTA  700

seq1  GATGATACTATAATAGTTCTCGCTGAGGAGCATGGGTGTCTGGACATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATACTATAATAGTTCTCGCTGAGGAGCATGGGTGTCTGGACATTAT  750

seq1  CAAGGTTCGTTGTACATGTGTGCTATTCCAACAGACTATCTGAGCCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCGTTGTACATGTGTGCTATTCCAACAGACTATCTGAGCCTGGG  800

seq1  TCATCTTTAAAGAACAAAAGTAATCATCTCCCAGTTTTCGAGGCTGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTAAAGAACAAAAGTAATCATCTCCCAGTTTTCGAGGCTGGATA  850

seq1  TGTCATGATAAAGGTGCCCAGAGGCTCAGGCTTCTGATGAGGGAAGGACA  900
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TGTCATGATAAA-GTGCCCAGAGGCTCA-GCTTCTGATGAGGGAAGGACA  898

seq1  CTCACAGCAGAGAAGCAAGCTCTTCACGGCAGTGGATACGGGAAGTGTGA  950
      |||||||||||||||| |||||||||| ||||||||||| ||||||||||
seq2  CTCACAGCAGAGAAGC-AGCTCTTCAC-GCAGTGGATAC-GGAAGTGTGA  945

seq1  GATCCCATTCCCAAGATGAAGGCCCGTGGGACCCCATCACCTCTCATAGG  1000
      ||| |||||||  ||||||  |||||||||| ||||||| ||||||||| 
seq2  GAT-CCATTCC--AGATGA--GCCCGTGGGA-CCCATCA-CTCTCATAG-  987

seq1  CCACCTCTTTTTTTGTTTGTTTGCTTTTATTTTTATAAATTCTTGAGAAC  1050
       |||||| |||||||||   |||| ||||||| |||       |||||  
seq2  -CACCTC-TTTTTTGTT--GTTGC-TTTATTTATAT------CTGAGA--  1024

seq1  TTCATACAGTGTTCTGACCATATTCACC  1078
       |||||||||| ||||| |||| |||||
seq2  CTCATACAGTG-TCTGA-CATA-TCACC  1049

seq1: chr3_132496300_132497472
seq2: B6Ng01-300M12.g_66_1211 (reverse)

seq1  AAATCACTTGTTATTAACATTATGACATGTAGAACCTTTAAGGTTACACC  50
      |||||||||| |||  || ||| ||||| |||| |  |||    ||| ||
seq2  AAATCACTTG-TAT--AC-TTA-GACAT-TAGAGC--TTA---GTACCCC  39

seq1  CAGCATATGGGGATTAGACCATAAGGGGTGGGGTCAAAGCAGGAAAGACA  100
        ||||||||| |||||| ||||||||   ||||||| ||| ||||||||
seq2  AGGCATATGGGAATTAGA-CATAAGGG--TGGGTCAAGGCA-GAAAGACA  85

seq1  GTGGAGAGTCAAATGGCTGTAATCTAAGACAGATTGGTATGTTTGTGGAG  150
      ||||||||||||   ||||| |||| ||||||||| ||||| |||||   
seq2  GTGGAGAGTCAA--TGCTGT-ATCT-AGACAGATT-GTATG-TTGTG--A  127

seq1  GTGCTCATCATGAGAAAGTGCACTAGTGTTGGGTTGGATATCATGACAGA  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GTGCTCATCATGAGAAAGTGCACTAGTGTTGGGTT-GATATCATGACAG-  175

seq1  AGGCTCCTGAGAGAAGGGAGGTTGGACCTTCTGCCGTGTTAAGATGCACG  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTGAGAGAA-GGAGGTTGGACCTTCTGCCGTGTTAAGATGCACG  224

seq1  AGAGGTTCTCACCTGATGTAGAACTTCCCCTATTCCTCAGTATTGAACTG  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTCA-CTGATGTAGAACTTCCCCTATTCCTCAGTATTGAACTG  273

seq1  ACTACTGAACTTCCCCTGTTCCAGAACTGTTTAAAAGTAATCTTATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAACTTCCCCTGTTCCAGAACTGTTTAAAAGTAATCTTATCACA  323

seq1  AAGTACCTCAGCTGTGATACTGTGTCATAGCAGCAGGAGGGCCACTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCTCAGCTGTGATACTGTGTCATAGCAGCAGGAGGGCCACTCCTG  373

seq1  GGGTCCCTGCTATGTCCTGTGCCTTTCACAGATGTCTATGTCAGCGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCTGCTATGTCCTGTGCCTTTCACAGATGTCTATGTCAGCGTATG  423

seq1  ATGTGACTACCAGGCCATAGCCTCCCGGTCCTGGCTTTGTAGCCGCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTACCAGGCCATAGCCTCCCGGTCCTGGCTTTGTAGCCGCTGCT  473

seq1  TTCAGCTCTGAGTGACTTTCTTTCTTCTTTTTTTTTTTTAAGTTTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTGAGTGACTTTCTTTCTTCTTTTTTTTTTTTAAGTTTTATTT  523

seq1  ATTTATTTTATGTATGTGAGTACACTGTCTCTGTCTTCAGACACACCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTATGTATGTGAGTACACTGTCTCTGTCTTCAGACACACCAGA  573

seq1  AGAGGGCATCAGATCTCATTAAGGATGGGTGTGAGCCACCATGTGGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATCAGATCTCATTAAGGATGGGTGTGAGCCACCATGTGGTTGC  623

seq1  TGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTAACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTAACTGC  673

seq1  TGAGCCATCTCTCCAGCCCTCTGAGTAACTTTCAAAGGAAGAAAAAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCTCCAGCCCTCTGAGTAACTTTCAAAGGAAGAAAAAGTAG  723

seq1  CCACTTCTTAGTTGTCACTATGTATCATTTCTGAGAAAACTCACTTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTTAGTTGTCACTATGTATCATTTCTGAGAAAACTCACTTCACA  773

seq1  TTTTATAACGTACAATTGAACTTCAGTAAGTATACAAAAAAAAAAGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAACGTACAATTGAACTTCAGTAAGTATACAAAAAAAAAAGAATA  823

seq1  CAAAAATAACAGGGAGAGAATATTTACCTCAGTTACAGGAAGAACGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAACAGGGAGAGAATATTTACCTCAGTTACAGGAAGAACGTAGG  873

seq1  AAAGATTTGACTGAAGAATGGCGTTCAGAATTACATTGGCCATGTGGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTGACTGAAGAATGGCGTTCAGAATTACATTGGCCATGTGGTGA  923

seq1  TGGGAAGAAGTCAGTGCCGTATTTGATGTGTCATTCCACTGTCTTGCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAAGTCAGTGCCGTATTTGATGTGTCATTCCACTGTCTTGCTCT  973

seq1  GACCCTTATCAGATCTCATATGCTTCTCATTGTTGTTCATAAGATGTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTATCAGATCTCATATGCTTCTCATTGTTGTTCATAAGATGTCCA  1023

seq1  GATCTACTGACCAAGACTTTCAGGAACTGTCCCAGAAATGGCTTCAATGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACTGACCAAGACTTTCAGGAACTGTCCCAGAAATGGCTTCAATGA  1073

seq1  TCCAGGCAAGACAGCATGGTGCTAGTCAGAATTGCTGCTGCTGTGATGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAAGACAGCATGGTGCTAGTCAGAATTGCTGCTGCTGTGATGAA  1123

seq1  GACTTGAGAGAAAGGGTGAATTC  1173
      |||||||||||||||||||||||
seq2  GACTTGAGAGAAAGGGTGAATTC  1146