BAC Information

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BAC

Clone NameB6Ng01-301A22
Chromosome3 (Build37)
Map Location 26,275,899 - 26,411,037
singlet/doubletdoublet
Overlap geneLOC229152
Upstream geneNlgn1, LOC621017
Downstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301A22.bB6Ng01-301A22.g
ACCGA095471GA095472
length4121,047
definitionB6Ng01-301A22.b B6Ng01-301A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,410,620 - 26,411,037)(26,275,899 - 26,276,947)
sequence
ttcctggcagttctttgctacatcatgagttatgtacacttgaagcagcc
tttaatttgctgagagttctgtgacactcacctgaagcttgtcgtcaggt
tcatcttttcagaaagagttttcttgaaggttttcctacaagacctgatt
tctatcaacaggaacctgttgccatgatactacagagacatgttttagcg
atttgttgggttttgatcacttttctgaacatagttcatggatttgggaa
tatctattctgataagccagtctgtacacattttgagtcacacctggtgt
ctctgtgatgccactatacctgctgaactctctgaacagggcttctactt
tatttaacctactccttaaatcatcagggttattgtgtgtagggtttttt
tgggaggggtat

gaattcactcaaatccacctcccacagaaaaaaatagactccagagaagt
tctgtcaatcaacagcctttccccaccttgcctgcctattcttgagggtg
gaatctattcctcattccctagtcttgggacccccatccctccagcaact
accaagaccatgggcctgaaagtttcacctatatacctaagaaaaatgtt
tgtctcctaaaatccttaactttatcttcttctgcctctctctctctctc
tctctctctctctctctctgtctgtctgtctgtctgtctgtctgtgtgta
tgccaagtccagatatttccttagaagctgcacacgggacagttccaaag
cagttaagccgttaccataggtgctctggtctagcctcacagactgcttc
aactgggccttcacatttccacctccagatgctcccacaacatggacagc
agagaaacaagcagctcttcccagacttgatcaacattccagttttgccc
agcccccataacaatgcccccaatgccggcaggatgtacagacaaattat
tacattgtccctttcaacacagaagatttctttgaagaataatataaatg
ttaacaatatagaccagctgtatcttatccttccatgttataaattcaaa
tgacacaccactgctttagagagatgctccaaggcattttctacctgtga
ctcttttacatctgagaaaattctaagtggccccaattatataactgggc
aaggaaaacatacccgacaatagaccaatgaataaataataaagaaataa
aagaatttatattaaaataatgctttgttatgtgggtgcgtagagattta
ccatgtattaaggataacagcaagttcatactaatgagatgatgtgctga
cttttacttaaacaattaagtcttttaaaaatcatatcatgttttaatct
ccatatattgtctacttgtgttttgagcaaattcacattcttttgttctt
cacactctatttttatgaccctgcacttcccactttccagctttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26410620_26411037
seq2: B6Ng01-301A22.b_47_464 (reverse)

seq1  ATACCCCTCCCAAAAAAACCCTACACACAATAACCCTGATGATTTAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCTCCCAAAAAAACCCTACACACAATAACCCTGATGATTTAAGGA  50

seq1  GTAGGTTAAATAAAGTAGAAGCCCTGTTCAGAGAGTTCAGCAGGTATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTAAATAAAGTAGAAGCCCTGTTCAGAGAGTTCAGCAGGTATAGT  100

seq1  GGCATCACAGAGACACCAGGTGTGACTCAAAATGTGTACAGACTGGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCACAGAGACACCAGGTGTGACTCAAAATGTGTACAGACTGGCTTA  150

seq1  TCAGAATAGATATTCCCAAATCCATGAACTATGTTCAGAAAAGTGATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATAGATATTCCCAAATCCATGAACTATGTTCAGAAAAGTGATCAA  200

seq1  AACCCAACAAATCGCTAAAACATGTCTCTGTAGTATCATGGCAACAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACAAATCGCTAAAACATGTCTCTGTAGTATCATGGCAACAGGTT  250

seq1  CCTGTTGATAGAAATCAGGTCTTGTAGGAAAACCTTCAAGAAAACTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGATAGAAATCAGGTCTTGTAGGAAAACCTTCAAGAAAACTCTTT  300

seq1  CTGAAAAGATGAACCTGACGACAAGCTTCAGGTGAGTGTCACAGAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGATGAACCTGACGACAAGCTTCAGGTGAGTGTCACAGAACTCT  350

seq1  CAGCAAATTAAAGGCTGCTTCAAGTGTACATAACTCATGATGTAGCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATTAAAGGCTGCTTCAAGTGTACATAACTCATGATGTAGCAAAG  400

seq1  AACTGCCAGGAAGAATTC  418
      ||||||||||||||||||
seq2  AACTGCCAGGAAGAATTC  418


seq1: chr3_26275899_26276947
seq2: B6Ng01-301A22.g_68_1114

seq1  GAATTCACTCAAATCCACCTCCCACAGAAAAAAATAGACTCCAGAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAAATCCACCTCCCACAGAAAAAAATAGACTCCAGAGAAGT  50

seq1  TCTGTCAATCAACAGCCTTTCCCCACCTTGCCTGCCTATTCTTGAGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAATCAACAGCCTTTCCCCACCTTGCCTGCCTATTCTTGAGGGTG  100

seq1  GAATCTATTCCTCATTCCCTAGTCTTGGGACCCCCATCCCTCCAGCAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTATTCCTCATTCCCTAGTCTTGGGACCCCCATCCCTCCAGCAACT  150

seq1  ACCAAGACCATGGGCCTGAAAGTTTCACCTATATACCTAAGAAAAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACCATGGGCCTGAAAGTTTCACCTATATACCTAAGAAAAATGTT  200

seq1  TGTCTCCTAAAATCCTTAACTTTATCTTCTTCTGCCTCTCTCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTAAAATCCTTAACTTTATCTTCTTCTGCCTCTCTCTCTCTCTC  250

seq1  TCTCTCTCTCTCTCTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGTA  300

seq1  TGCCAAGTCCAGATATTTCCTTAGAAGCTGCACACGGGACAGTTCCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTCCAGATATTTCCTTAGAAGCTGCACACGGGACAGTTCCAAAG  350

seq1  CAGTTAAGCCGTTACCATAGGTGCTCTGGTCTAGCCTCACAGACTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGCCGTTACCATAGGTGCTCTGGTCTAGCCTCACAGACTGCTTC  400

seq1  AACTGGGCCTTCACATTTCCACCTCCAGATGCTCCCACAACATGGACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCCTTCACATTTCCACCTCCAGATGCTCCCACAACATGGACAGC  450

seq1  AGAGAAACAAGCAGCTCTTCCCAGACTTGATCAACATTCCAGTTTTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAAGCAGCTCTTCCCAGACTTGATCAACATTCCAGTTTTGCCC  500

seq1  AGCCCCCATAACAATGCCCCCAATGCCGGCAGGATGTACAGACAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCATAACAATGCCCCCAATGCCGGCAGGATGTACAGACAAATTAT  550

seq1  TACATTGTCCCTTTCAACACAGAAGATTTCTTTGAAGAATAATATAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTCCCTTTCAACACAGAAGATTTCTTTGAAGAATAATATAAATG  600

seq1  TTAACAATATAGACCAGCTGTATCTTATCCTTCCATGTTATAAATTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATATAGACCAGCTGTATCTTATCCTTCCATGTTATAAATTCAAA  650

seq1  TGACACACCACTGCTTTAGAGAGATGCTCCAAGGCATTTTCTACCTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACCACTGCTTTAGAGAGATGCTCCAAGGCATTTTCTACCTGTGA  700

seq1  CTCTTTTACATCTGAGAAAATTCTAAGTGGCCCCAATTATATAACTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTACATCTGAGAAAATTCTAAGTGGCCCCAATTATATAACTGGGC  750

seq1  AAGGAAAACATACCCGACAATAGACCAATGAATAAATAATAAAGAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACATACCCGACAATAGACCAATGAATAAATAATAAAGAAATAA  800

seq1  AAGAATTTATATTAAAATAATGCTTTGTTATGTGGGTGCGTAGAGATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTATATTAAAATAATGCTTTGTTATGTGGGTGCGTAGAGATTTA  850

seq1  CCATGTATTAAGGATAACAGCAAGTTCATACTAATGAGATGATGTGCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATTAAGGATAACAGCAAGTTCATACTAATGAGATGATGTGCTGA  900

seq1  CTTTTACTTAAACAATTAAGTCTTTTAAAAATCATATCATGTTTTAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTTACTTAAACAATTAAGTCTTTTAAAAATCATATCATGTTTT-AATC  949

seq1  TCCATATATTGTCTACCTTGTGTTTTGAGCAAATTTCACCATC-TTTGTT  999
      ||||||||||||||| ||||||||||||||||| |||||  || ||||||
seq2  TCCATATATTGTCTA-CTTGTGTTTTGAGCAAA-TTCACATTCTTTTGTT  997

seq1  CTTCCACACTCTA-TTTTATGACCCCTGCACTTCCCAC-TTCCAGCTTTG  1047
      ||| ||||||||| |||||||| ||||||||||||||| |||||||||||
seq2  CTT-CACACTCTATTTTTATGA-CCCTGCACTTCCCACTTTCCAGCTTTG  1045

seq1  TT  1049
      ||
seq2  TT  1047


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