BAC Information

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BAC

Clone NameB6Ng01-301H12
Chromosome3 (Build37)
Map Location 88,353,412 - 88,517,533
singlet/doubletdoublet
Overlap geneMapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik
Upstream geneEG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25
Downstream geneRit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301H12.bB6Ng01-301H12.g
ACCGA095772GA095773
length1,0191,103
definitionB6Ng01-301H12.b B6Ng01-301H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,353,412 - 88,354,419)(88,516,430 - 88,517,533)
sequence
gaattccaggacagccagggttatacagagaaatcctgtctcacaaaaac
caaaaaacaaattgtttaaagaaaagcaattctgggaggatgggaaggga
gctttttgcaatgtaaatagaataaacatataaattaatggaaaaaaaaa
gcaattaggagtatgatgagacacagcactggagaagccaagggcactgg
gcagccctgccaagaaccactgagagatttggtgatggggaatgagagag
cccacctttgcaggagaggggaatcctcccgaggaaaccactccacactt
tcctcccaagaaagcaggtgagacacaggtaagagttgaaaatttattca
gaaaaaagcaacccccccttcctgtacctcgcccgatatggcgtttctag
ggccccgcccctccctccagatcatcatcccttttctactccagcctcca
tcacgctgttatgatgctgctacttgggtgaggggttcctccaggtactg
caccagggcctgggcctgcaaggaggcaggagcacagtcagtccatgcat
cgcttatgcttagacggatccctgaaccacgctggctccccacgccacac
ttagcagccaactccccccccagcccacccccactgctctttagcccatc
ctagacatggagtgaggagctatgagaactccagagaggggagggacatg
taaggaacacagtgaacaggaactaaggctggatcagtgctgggttgatg
atattgcgccctatgtaaagatcatctttgtattattattcaaatgcccg
atttctgtgccagcagagtttatgcagactggaactttggttcatttggg
tttcatttggctacatattttgtaaacactcctcgctccaccttttgatc
agcttaattaaaaagcaaaggcaggaagtatgaggtggacctcccaggaa
gaaaataaggaatttctgggaagaagagttgccagcttggacaagatgaa
ggagagcaggtctcaggac
gaattcactcctgaagggatgtcctccgacagctacacacattgtggaac
aaaagtgtattcattaatctctttaagatttatttttctctggccgggtg
tggcggcgcacgcctttaatcccagcactcaggaggcagaggcaggtgga
tttctgagttcgaggttggccgtggtctacagagtgagttccaggacagc
cagggctatacagagaaaccctgtctcaaaaaaaaaaaaatttatttttc
tctggatgtatttgtaactatatgtattgcatggcccccttggaggctag
aagagcatacagtgagaccctatctcaaaaacaaaacaaagtaaaccact
gaaggggaaaaataaaaaatagaaaacatgtaacttaataataattgtaa
atccttttatattaaggatatatttttcagagttatcagctcaaggagca
tatgcaaatgctggagcctgttatgttcttgttgggcagggtttatgcaa
tgaatacaaaagcatattaagggggtggagagatgactcaaagggaaaag
cactacgtcagaggatccagcttcaattcccatttgccacacaacaactc
atatctacatacattactccagctccaagggatctgatccctcccacaca
catacatgcaaaaaaacaacaatgcacattaaaaaaataaataattgaag
agtttattgatattagtgtatgaacaggctagggaagaaaaagagaaatg
acaagcagaatatttatacatttatttataatgaaattatggtctaatta
tttacaacatacaagaaaccagagaataagtttgtacaaagccagcccgc
aagtattcaaaaatgtgcaaaaatgacagtatctcagacgctcctggctc
accaccaattccttcacttccacacatgaatatttggatacaaaaaagtt
cttttggccaaaacccgcaatgcccaagaaaaaaggacaagtttgcaatt
ccagtcagtcacgtctgtcgtgcacacatccttcttctcgctgcagcagt
ctgaaagaagaacagatgaattgtttcgcgattttctttgactccagtga
aac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88353412_88354419
seq2: B6Ng01-301H12.b_47_1065

seq1  GAATTCCAGGACAGCCAGGGTTATACAGAGAAATCCTGTCTCACAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGTTATACAGAGAAATCCTGTCTCACAAAAAC  50

seq1  CAAAAAACAAATTGTTTAAAGAAAAGCAATTCTGGGAGGATGGGAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAATTGTTTAAAGAAAAGCAATTCTGGGAGGATGGGAAGGGA  100

seq1  GCTTTTTGCAATGTAAATAGAATAAACATATAAATTAATGGAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGCAATGTAAATAGAATAAACATATAAATTAATGGAAAAAAAAA  150

seq1  GCAATTAGGAGTATGATGAGACACAGCACTGGAGAAGCCAAGGGCACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAGGAGTATGATGAGACACAGCACTGGAGAAGCCAAGGGCACTGG  200

seq1  GCAGCCCTGCCAAGAACCACTGAGAGATTTGGTGATGGGGAATGAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTGCCAAGAACCACTGAGAGATTTGGTGATGGGGAATGAGAGAG  250

seq1  CCCACCTTTGCAGGAGAGGGGAATCCTCCCGAGGAAACCACTCCACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTTGCAGGAGAGGGGAATCCTCCCGAGGAAACCACTCCACACTT  300

seq1  TCCTCCCAAGAAAGCAGGTGAGACACAGGTAAGAGTTGAAAATTTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCAAGAAAGCAGGTGAGACACAGGTAAGAGTTGAAAATTTATTCA  350

seq1  GAAAAAAGCAACCCCCCCTTCCTGTACCTCGCCCGATATGGCGTTTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGCAACCCCCCCTTCCTGTACCTCGCCCGATATGGCGTTTCTAG  400

seq1  GGCCCCGCCCCTCCCTCCAGATCATCATCCCTTTTCTACTCCAGCCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGCCCCTCCCTCCAGATCATCATCCCTTTTCTACTCCAGCCTCCA  450

seq1  TCACGCTGTTATGATGCTGCTACTTGGGTGAGGGGTTCCTCCAGGTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCTGTTATGATGCTGCTACTTGGGTGAGGGGTTCCTCCAGGTACTG  500

seq1  CACCAGGGCCTGGGCCTGCAAGGAGGCAGGAGCACAGTCAGTCCATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGCCTGGGCCTGCAAGGAGGCAGGAGCACAGTCAGTCCATGCAT  550

seq1  CGCTTATGCTTAGACGGATCCCTGAACCACGCTGGCTCCCCACGCCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTATGCTTAGACGGATCCCTGAACCACGCTGGCTCCCCACGCCACAC  600

seq1  TTAGCAGCCAACTCCCCCCCCAGCCCACCCCCACTGCTCTTTAGCCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGCCAACTCCCCCCCCAGCCCACCCCCACTGCTCTTTAGCCCATC  650

seq1  CTAGACATGGAGTGAGGAGCTATGAGAACTCCAGAGAGGGGAGGGACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACATGGAGTGAGGAGCTATGAGAACTCCAGAGAGGGGAGGGACATG  700

seq1  TAAGGAACACAGTGAACAGGAACTAAGGCTGGATCAGTGCTGGGATGATG  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAGGAACACAGTGAACAGGAACTAAGGCTGGATCAGTGCTGGGTTGATG  750

seq1  ATATTGCGCCCTATGTAAAGATCATCTTTGTATTATTATTCAAATG-CCG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATTGCGCCCTATGTAAAGATCATCTTTGTATTATTATTCAAATGCCCG  800

seq1  ATTTCTGTGCCAGCAGAGTTTAATGCAGACTGG-ACTTTGGTTCATTT-G  847
      ||||||||||||||||||||| ||||||||||| |||||||||||||| |
seq2  ATTTCTGTGCCAGCAGAGTTT-ATGCAGACTGGAACTTTGGTTCATTTGG  849

seq1  GTTTCATTTGGCTACATATTTTGTAAACACT-CTCGCT-CACCTTTTGAT  895
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  GTTTCATTTGGCTACATATTTTGTAAACACTCCTCGCTCCACCTTTTGAT  899

seq1  CAGCTT-ATTAAAAAGCAAAGGCAGGAAGTAGGAGGTGGGACTTCCAGGA  944
      |||||| |||||||||||||||||||||||| |||||||  || ||||||
seq2  CAGCTTAATTAAAAAGCAAAGGCAGGAAGTATGAGGTGGACCTCCCAGGA  949

seq1  AGAGA--TAGGAA-TTCTGGG-AGAGGAGTTGCCAGC-TGGACAAAGATG  989
      ||| |   ||||| ||||||| ||| ||||||||||| ||||| ||||||
seq2  AGAAAATAAGGAATTTCTGGGAAGAAGAGTTGCCAGCTTGGAC-AAGATG  998

seq1  -AGGA-AGCAGGTACCAGGAC  1008
       |||| |||||||  ||||||
seq2  AAGGAGAGCAGGTCTCAGGAC  1019

seq1: chr3_88516430_88517533
seq2: B6Ng01-301H12.g_68_1170 (reverse)

seq1  GTTTCCAACTGG-GTCAAAGAAAA-CGCGAAAC-ACTCATCTGT--CTCT  45
      |||||  ||||| ||||||||||| |||||||| | ||||||||   |||
seq2  GTTTC--ACTGGAGTCAAAGAAAATCGCGAAACAATTCATCTGTTCTTCT  48

seq1  CTCAGAACTGGCTGCAGCGAGAAGAGGGATGTGGTGCCACCGACAGGACG  95
       |||| ||| ||||||||||||||| |||||| ||||   ||||| ||| 
seq2  TTCAG-ACT-GCTGCAGCGAGAAGAAGGATGT-GTGC--ACGACA-GAC-  91

seq1  GTGACTGACTGGAATTGC-AACTTGTCCTTTTTTCTT-GGCATTGCGGGT  143
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  GTGACTGACTGGAATTGCAAACTTGTCCTTTTTTCTTGGGCATTGCGGGT  141

seq1  TTT-GCCAAAAGAACTTTTTTGTAT-CAAATATTCATGTGTGGAAGTGAA  191
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGGCCAAAAGAACTTTTTTGTATCCAAATATTCATGTGTGGAAGTGAA  191

seq1  GGAATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGTGGTGAGCCAGGAGCGTCTGAGATACTGTCATTTTTGCACAT  241

seq1  TTTTGAATACTTTGCGGGCTGGCTTTGTACAAACTTATTCTCTGGTTTCT  291
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATAC-TTGCGGGCTGGCTTTGTACAAACTTATTCTCTGGTTTCT  290

seq1  TGTATGTTGTAAATAATTAGACCATAATTTCATTATAAATAAATGTATAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTGTAAATAATTAGACCATAATTTCATTATAAATAAATGTATAA  340

seq1  ATATTCTGCTTGTCATTTCTCTTTTTCTTCCCTAGCCTGTTCATACACTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGCTTGTCATTTCTCTTTTTCTTCCCTAGCCTGTTCATACACTA  390

seq1  ATATCAATAAACTCTTCAATTATTTATTTTTTTAATGTGCATTGTTGTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATAAACTCTTCAATTATTTATTTTTTTAATGTGCATTGTTGTTT  440

seq1  TTTTGCATGTATGTGTGTGGGAGGGATCAGATCCCTTGGAGCTGGAGTAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATGTATGTGTGTGGGAGGGATCAGATCCCTTGGAGCTGGAGTAA  490

seq1  TGTATGTAGATATGAGTTGTTGTGTGGCAAATGGGAATTGAAGCTGGATC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAGATATGAGTTGTTGTGTGGCAAATGGGAATTGAAGCTGGATC  540

seq1  CTCTGACGTAGTGCTTTTCCCTTTGAGTCATCTCTCCACCCCCTTAATAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACGTAGTGCTTTTCCCTTTGAGTCATCTCTCCACCCCCTTAATAT  590

seq1  GCTTTTGTATTCATTGCATAAACCCTGCCCAACAAGAACATAACAGGCTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTATTCATTGCATAAACCCTGCCCAACAAGAACATAACAGGCTC  640

seq1  CAGCATTTGCATATGCTCCTTGAGCTGATAACTCTGAAAAATATATCCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGCATATGCTCCTTGAGCTGATAACTCTGAAAAATATATCCTT  690

seq1  AATATAAAAGGATTTACAATTATTATTAAGTTACATGTTTTCTATTTTTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGGATTTACAATTATTATTAAGTTACATGTTTTCTATTTTTT  740

seq1  ATTTTTCCCCTTCAGTGGTTTACTTTGTTTTGTTTTTGAGATAGGGTCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCCTTCAGTGGTTTACTTTGTTTTGTTTTTGAGATAGGGTCTC  790

seq1  ACTGTATGCTCTTCTAGCCTCCAAGGGGGCCATGCAATACATATAGTTAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGCTCTTCTAGCCTCCAAGGGGGCCATGCAATACATATAGTTAC  840

seq1  AAATACATCCAGAGAAAAATAAATTTTTTTTTTTTTGAGACAGGGTTTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATCCAGAGAAAAATAAATTTTTTTTTTTTTGAGACAGGGTTTCT  890

seq1  CTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCACGGCCAACC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCACGGCCAACC  940

seq1  TCGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAG  990

seq1  GCGTGCGCCGCCACACCCGGCCAGAGAAAAATAAATCTTAAAGAGATTAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCGCCACACCCGGCCAGAGAAAAATAAATCTTAAAGAGATTAA  1040

seq1  TGAATACACTTTTGTTCCACAATGTGTGTAGCTGTCGGAGGACATCCCTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACACTTTTGTTCCACAATGTGTGTAGCTGTCGGAGGACATCCCTT  1090

seq1  CAGGAGTGAATTC  1104
      |||||||||||||
seq2  CAGGAGTGAATTC  1103