BAC Information

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BAC

Clone NameB6Ng01-301M24
Chromosome3 (Build37)
Map Location 44,183,826 - 44,322,140
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301M24.bB6Ng01-301M24.g
ACCGA096029GA096030
length1,1691,099
definitionB6Ng01-301M24.b B6Ng01-301M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,320,962 - 44,322,140)(44,183,826 - 44,184,804)
sequence
gaattcttccaaccaaagtacagacatccattttcacaaagcctggaggt
caacagcctcctttctctcgtaagattcccagttttataaccagacttta
atatgcaatctaatctactcacagctccttgtaatagaaggctatttacg
atgcatatgatttgtacagctatttgaagtaaatcttttcagctataaag
caaactgataattcttgttcatatagatatttgctgaaactgtttagaat
gggtagattctggggacataacagcctaaatttttgtcaaattatacttt
ctgtatctaagaagttaaagatgacgtagaagaattttcatttagtgttt
tatcatttgaaaacacatttaatatctttactgtaagagctaatattaaa
acaacacaaatgctcattaattggtaaatgtgtgaaaactgacaagtatc
taaataatctagaaaattaaaaaatcatgagaaaaaacagaaggtggata
acaatttttttgatcattgcatgttttattttttgctctctttccagagt
tcttcaccccatacttcttcctctttgtctctgagagggtacgcacctcc
taggggcatcctccatatatgggccatcaactctttacaggattaagcac
ttcctttctcactgaggccagacagggctgtcctctactacatatgtgtc
aggggcctcagaccagctcatgcatgctctttgtttggtggcttagtaag
agacaaaccccttccatccatccccaaatatagaaattccaattatttta
aattcaacaaaacagacattagtcatgaagaaagtagaacaatttgtttc
tgaagtctggagaaaacagttgaataaactaaaggaaatatcttagattc
aacagcaaatattgtgattgaacaaaatgagcaaaaccacttccttaatg
aaagtttttagtcagtataaagatataaaatatataaatcaagttttaag
agagtatgtatttttagagtcagttttccctgtgcttaacataaattaag
acaattggatcactacttatcatgtgtgagcaacttcaataggaaagaat
attaggtatagaatattttttgaaaagcaacggtaccttcccttgatcaa
cttatcatactttggaaat
gaattcacgcccagtcactgcccatctcagggcatagtaatggggtaatg
ggcgagcaactaatcaggtgctgtcatgccacatcaggtgctgaaatgtc
acgctgcgggctatataagcagtgccattttctgggttctgggtcttcct
gagaagtaagcaataaaagctttgccgtagaaggatccggttgtccgagt
gaattcttgcctgcgagatactagctcgggcaagatagggggatactggt
tagttcatattgttgttccacctatagggttgcagacccctttagctcct
tgggtactttctctagctcctccattggggaccccgtgatccatccaata
gctgactgtgagcatccacttctgtgtttgctaggccctggcatagtctc
acaagagacagctctatctgggtcctttcagcaaaatcttgctagtgtat
gcaatggtgtcagcgtttggaggctgattatgggatggatcccaggtatg
gcagtctctagatggtccatcgtttgtctcagctccaaactttgtctctg
taactccttccatggatgttttgctcccaattctaagaaggggcaaagtg
tccacatttttatcaggaattgcttcatgggctattttgtaatatcgtaa
tgtatctcaagatgtcatagactctaatttacccacttagttctgaccag
ttcctcaagcagagagcatattcctattacatatgatagctgtcttagtc
agggtttctattcctgtacaaacatcatgaccaagaagcaagttagggag
gaaagggtttattctgcttacacttccacactgttcttcatcaccaaggg
aagtcaggactggaactcaagcaggtcaaaaggcaggagctgatgcagag
gcaatgggagggatgtttactggcttgcttcccctagcttgctcagtcta
ctctctatagaacccaagactaccagcccagagatggttccacccacaaa
ggagccctttccccctggatcataatggagaacatgccttacagctggat
ctcatggaggcaatttccttaaggtgaagcttctttcctctgtggataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44320962_44322140
seq2: B6Ng01-301M24.b_45_1213 (reverse)

seq1  ATTTC--AAGTATGATAATATTAACCACGGAGAAGGTACTGTTTCCTTTC  48
      |||||  |||||||||||  || | || || |||||||| ||| | ||||
seq2  ATTTCCAAAGTATGATAA-GTTGATCAAGG-GAAGGTACCGTTGCTTTTC  48

seq1  AAAAAATA-TCTATA-CTAATTTATTCTTTCTTAATGGAGTTTGCTCCAC  96
      |||||||| |||||| ||||  ||||||||| || || || ||||| |||
seq2  AAAAAATATTCTATACCTAA--TATTCTTTCCTATTGAAG-TTGCT-CAC  94

seq1  ACCATGATAAGGTAGTGATCAATTTGTCTTTATTTATGTTAAGGCACAAG  146
      | |||||||| ||||||||| | ||||||| ||||||||||| ||||| |
seq2  A-CATGATAA-GTAGTGATCCAATTGTCTTAATTTATGTTAA-GCACAGG  141

seq1  GAAAACTGGACTCCTAAAATACATACTCTCTTAAAACTTGATTTATTATA  196
      ||||||| |||||  |||||||||||||||||||||||||||||| ||||
seq2  GAAAACT-GACTCTAAAAATACATACTCTCTTAAAACTTGATTTA-TATA  189

seq1  TTTTTATTATCTTTTATACTGACTAAAAACTTTCATTAAGGAAGTGGTTT  246
      ||||   |||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTT--ATATC-TTTATACTGACTAAAAACTTTCATTAAGGAAGTGGTTT  236

seq1  TGCTCATTTTGTTCAATCACAATATTTGCTGTTGAATCTAAGATATTTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTTGTTCAATCACAATATTTGCTGTTGAATCTAAGATATTTCC  286

seq1  TTTAGTTTATTCAACTGTTTTCTCCAGACTTCAGAAACAAATTGTTCTAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTATTCAACTGTTTTCTCCAGACTTCAGAAACAAATTGTTCTAC  336

seq1  TTTCTTCATGACTAATGTCTGTTTTGTTGAATTTAAAATAATTGGAATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATGACTAATGTCTGTTTTGTTGAATTTAAAATAATTGGAATTT  386

seq1  CTATATTTGGGGATGGATGGAAGGGGTTTGTCTCTTACTAAGCCACCAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTGGGGATGGATGGAAGGGGTTTGTCTCTTACTAAGCCACCAAA  436

seq1  CAAAGAGCATGCATGAGCTGGTCTGAGGCCCCTGACACATATGTAGTAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCATGCATGAGCTGGTCTGAGGCCCCTGACACATATGTAGTAGA  486

seq1  GGACAGCCCTGTCTGGCCTCAGTGAGAAAGGAAGTGCTTAATCCTGTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCCTGTCTGGCCTCAGTGAGAAAGGAAGTGCTTAATCCTGTAAA  536

seq1  GAGTTGATGGCCCATATATGGAGGATGCCCCTAGGAGGTGCGTACCCTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGATGGCCCATATATGGAGGATGCCCCTAGGAGGTGCGTACCCTCT  586

seq1  CAGAGACAAAGAGGAAGAAGTATGGGGTGAAGAACTCTGGAAAGAGAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAAGAGGAAGAAGTATGGGGTGAAGAACTCTGGAAAGAGAGCA  636

seq1  AAAAATAAAACATGCAATGATCAAAAAAATTGTTATCCACCTTCTGTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAACATGCAATGATCAAAAAAATTGTTATCCACCTTCTGTTTT  686

seq1  TTCTCATGATTTTTTAATTTTCTAGATTATTTAGATACTTGTCAGTTTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGATTTTTTAATTTTCTAGATTATTTAGATACTTGTCAGTTTTC  736

seq1  ACACATTTACCAATTAATGAGCATTTGTGTTGTTTTAATATTAGCTCTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTACCAATTAATGAGCATTTGTGTTGTTTTAATATTAGCTCTTA  786

seq1  CAGTAAAGATATTAAATGTGTTTTCAAATGATAAAACACTAAATGAAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGATATTAAATGTGTTTTCAAATGATAAAACACTAAATGAAAAT  836

seq1  TCTTCTACGTCATCTTTAACTTCTTAGATACAGAAAGTATAATTTGACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACGTCATCTTTAACTTCTTAGATACAGAAAGTATAATTTGACAA  886

seq1  AAATTTAGGCTGTTATGTCCCCAGAATCTACCCATTCTAAACAGTTTCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGGCTGTTATGTCCCCAGAATCTACCCATTCTAAACAGTTTCAG  936

seq1  CAAATATCTATATGAACAAGAATTATCAGTTTGCTTTATAGCTGAAAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTATATGAACAAGAATTATCAGTTTGCTTTATAGCTGAAAAGA  986

seq1  TTTACTTCAAATAGCTGTACAAATCATATGCATCGTAAATAGCCTTCTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCAAATAGCTGTACAAATCATATGCATCGTAAATAGCCTTCTAT  1036

seq1  TACAAGGAGCTGTGAGTAGATTAGATTGCATATTAAAGTCTGGTTATAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGAGCTGTGAGTAGATTAGATTGCATATTAAAGTCTGGTTATAAA  1086

seq1  ACTGGGAATCTTACGAGAGAAAGGAGGCTGTTGACCTCCAGGCTTTGTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAATCTTACGAGAGAAAGGAGGCTGTTGACCTCCAGGCTTTGTGA  1136

seq1  AAATGGATGTCTGTACTTTGGTTGGAAGAATTC  1179
      |||||||||||||||||||||||||||||||||
seq2  AAATGGATGTCTGTACTTTGGTTGGAAGAATTC  1169

seq1: chr3_44183826_44184804
seq2: B6Ng01-301M24.g_181_1165

seq1  ATAAGCAGTGCCATTTTCTGGGTTCTGGGTCTTCCTGAGAAGTAAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGTGCCATTTTCTGGGTTCTGGGTCTTCCTGAGAAGTAAGCAAT  50

seq1  AAAAGCTTTGCCGTAGAAGGATCCGGTTGTCCGAGTGAATTCTTGCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTGCCGTAGAAGGATCCGGTTGTCCGAGTGAATTCTTGCCTGC  100

seq1  GAGATACTAGCTCGGGCAAGATAGGGGGATACTGGTTAGTTCATATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACTAGCTCGGGCAAGATAGGGGGATACTGGTTAGTTCATATTGTT  150

seq1  GTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCT  200

seq1  AGCTCCTCCATTGGGGACCCCGTGATCCATCCAATAGCTGACTGTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCATTGGGGACCCCGTGATCCATCCAATAGCTGACTGTGAGCA  250

seq1  TCCACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTC  300

seq1  TATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGC  350

seq1  GTTTGGAGGCTGATTATGGGATGGATCCCAGGTATGGCAGTCTCTAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGGCTGATTATGGGATGGATCCCAGGTATGGCAGTCTCTAGATG  400

seq1  GTCCATCGTTTGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCGTTTGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATG  450

seq1  GATGTTTTGCTCCCAATTCTAAGAAGGGGCAAAGTGTCCACATTTTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTGCTCCCAATTCTAAGAAGGGGCAAAGTGTCCACATTTTTATC  500

seq1  AGGAATTGCTTCATGGGCTATTTTGTAATATCGTAATGTATCTCAAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGCTTCATGGGCTATTTTGTAATATCGTAATGTATCTCAAGATG  550

seq1  TCATAGACTCTAATTTACCCACTTAGTTCTGACCAGTTCCTCAAGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACTCTAATTTACCCACTTAGTTCTGACCAGTTCCTCAAGCAGAG  600

seq1  AGCATATTCCTATTACATATGATAGCTGTCTTAGTCAGGGTTTCTATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTCCTATTACATATGATAGCTGTCTTAGTCAGGGTTTCTATTCC  650

seq1  TGTACAAACATCATGACCAAGAAGCAAGTTAGGGAGGAAAGGGTTTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAACATCATGACCAAGAAGCAAGTTAGGGAGGAAAGGGTTTATTC  700

seq1  TGCTTACACTTCCACACTGTTCTTCATCACCAA-GGAAGTCAGGACTGGA  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCTTACACTTCCACACTGTTCTTCATCACCAAGGGAAGTCAGGACTGGA  750

seq1  ACTCAAGCAGGTCAAAAGGCAGGAGCTGATGCAGAGGCAAT-GGAGGGAT  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTCAAGCAGGTCAAAAGGCAGGAGCTGATGCAGAGGCAATGGGAGGGAT  800

seq1  GTTTACTGGCTTGCTTCCCCTAGCTTGCTCAGTCTACTCTCTTATAGAAC  848
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTACTGGCTTGCTTCCCCTAGCTTGCTCAGTCTACTCTC-TATAGAAC  849

seq1  CCAAGACTACCAGCCCAGAGATGGTTCCACCCACAAA-GAGCCC-TTCCC  896
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  CCAAGACTACCAGCCCAGAGATGGTTCCACCCACAAAGGAGCCCTTTCCC  899

seq1  CCTTGATCATTAATTGAGACAATGCCTTACAGCTGGATCTCATGGAGGCA  946
      ||| ||||| |||| ||||  |||||||||||||||||||||||||||||
seq2  CCTGGATCA-TAATGGAGAACATGCCTTACAGCTGGATCTCATGGAGGCA  948

seq1  TTTTCCT--AAGTGAAGCTCCTTT-CTCTGT-GATAA  979
       ||||||  | |||||||| |||| |||||| |||||
seq2  ATTTCCTTAAGGTGAAGCTTCTTTCCTCTGTGGATAA  985