BAC Information

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BAC

Clone NameB6Ng01-301O04
Chromosome3 (Build37)
Map Location 45,561,428 - 45,711,812
singlet/doubletdoublet
Overlap geneLOC671801
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580
Downstream geneEG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301O04.bB6Ng01-301O04.g
ACCGA096081GA096082
length1,149205
definitionB6Ng01-301O04.b B6Ng01-301O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,710,643 - 45,711,812)(45,561,428 - 45,561,632)
sequence
gaattcataggagggaatagaggattagctttcaataccaaaactccttt
tctcaagactttaatgcccagagttctcaaaacgtcttatatttatcagt
gttttggcaatcattcttactgtttggtaccgaattgatatctaaaaaat
aatttataaagataaacaggaaacagtagtttgctctctgttcataagtt
ttaaataatagataaaattaagtgtgtgttattttttaatttaccattat
tttcacttcatacatccatatacactataatattcccataccaacaagct
aaaataataaaatcacgatattcagcatctctgttaaatcatatatttat
tatatgttacagactacaaatgactttgaataacataaaatagaaaattg
aaacataatgcagtatttctagtgttactttttttaatttttagatcagg
aaaacatgtgttttgctatttgaaaaattctatgtcttcaaattgtaagc
cactaacatatggcaaatattcataaggaaggtttcactgtatacatgca
aaccatagtgacttattgtgaataccaatacacatatagaaaaaatgcaa
taaactttcaaacatatgtcaagcaatgcccatgcactgctcctaagatc
aaatcaaacatgcagtgtctaggtgacagaagcacagtgcaaaatctgta
aatactttacctgctttgcttcatgcctaagagaatacagaagctacgat
aagctacacagggaagtacataatgctaaggagatatgttgaaaacctcc
aaaaggtagttacagaagttctgagtcaggggttaaaaccgtaagtaatt
tcttccagagtgctttctatcaatagttggctaatacatgaattaatttc
cacttctagggagttcttgacacttctggccttggtctcagcacccatca
cacacacacacacacacacacacacacacacacacacacacacactcaca
caaccccaccaacaatatgagcatagatttaaatacttatgactattagc
tatgaggctggattcaaacagattaggaaaaataacatatttcagtattt
cggaacaatgaatgacattgttgaagggatcagttgaatcatctcagtg

gaattcagtttgtcagtcttggcagtgaacatcttaacttaataaatcac
actgctggcttttgtatgcttttagtttcacatataagcaacatgggact
ccaaaaaaaagacttggcaggaatctgaaatttaatatatatatatatat
atatataaatatatatatatatatatatatatatatatatatatatatat
atata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45710643_45711812
seq2: B6Ng01-301O04.b_48_1196 (reverse)

seq1  CACTGAGATGGATCAACATTGATCACCTTTAACAAATGTCATTCATTTGT  50
      ||||||||||  |||||  ||||| |||| ||| ||||||||||| ||||
seq2  CACTGAGATGATTCAAC--TGATC-CCTTCAAC-AATGTCATTCA-TTGT  45

seq1  TCCCGAATACTGAAATATG-TATTTTTCCTAATCTGGTTTGGAAATCCCA  99
      |||  |||||||||||||| ||||||||||||||| |||||  ||| |||
seq2  TCCGAAATACTGAAATATGTTATTTTTCCTAATCT-GTTTG--AAT-CCA  91

seq1  GCTTCATAAGCTTAATAGTCATAAAGTAATTTTAAAATCTATGCTCATTA  149
      || |||| ||| |||||||||| |||||   || ||||||||||||||  
seq2  GCCTCAT-AGC-TAATAGTCAT-AAGTA---TTTAAATCTATGCTCAT--  133

seq1  TTTGTTTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  199
           ||||  ||| | ||||||| |||||||||||||||||||||||||
seq2  ----ATTGTTGGTGGGGTTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTG  179

seq1  TGTGTGTGTGTGTGTGTGTGTTGATGGGTGCTGGAGACCAAGGCCAGAAG  249
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTG-TGATGGGTGCT-GAGACCAAGGCCAGAAG  227

seq1  TGTCAAGAACTCCCTAGAAGTGG-AATTAATTCATGTATTAGCCAACTAT  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCAAGAACTCCCTAGAAGTGGAAATTAATTCATGTATTAGCCAACTAT  277

seq1  TGATAGAAAGCACTCTGGAAGAAATTACTTACGGTTTTAACCCCTGACTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAAGCACTCTGGAAGAAATTACTTACGGTTTTAACCCCTGACTC  327

seq1  AGAACTTCTGTAACTACCTTTTGGAGGTTTTCAACATATCTCCTTAGCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTGTAACTACCTTTTGGAGGTTTTCAACATATCTCCTTAGCAT  377

seq1  TATGTACTTCCCTGTGTAGCTTATCGTAGCTTCTGTATTCTCTTAGGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTTCCCTGTGTAGCTTATCGTAGCTTCTGTATTCTCTTAGGCAT  427

seq1  GAAGCAAAGCAGGTAAAGTATTTACAGATTTTGCACTGTGCTTCTGTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAGCAGGTAAAGTATTTACAGATTTTGCACTGTGCTTCTGTCAC  477

seq1  CTAGACACTGCATGTTTGATTTGATCTTAGGAGCAGTGCATGGGCATTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACTGCATGTTTGATTTGATCTTAGGAGCAGTGCATGGGCATTGC  527

seq1  TTGACATATGTTTGAAAGTTTATTGCATTTTTTCTATATGTGTATTGGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATATGTTTGAAAGTTTATTGCATTTTTTCTATATGTGTATTGGTA  577

seq1  TTCACAATAAGTCACTATGGTTTGCATGTATACAGTGAAACCTTCCTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATAAGTCACTATGGTTTGCATGTATACAGTGAAACCTTCCTTAT  627

seq1  GAATATTTGCCATATGTTAGTGGCTTACAATTTGAAGACATAGAATTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTGCCATATGTTAGTGGCTTACAATTTGAAGACATAGAATTTTT  677

seq1  CAAATAGCAAAACACATGTTTTCCTGATCTAAAAATTAAAAAAAGTAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCAAAACACATGTTTTCCTGATCTAAAAATTAAAAAAAGTAACA  727

seq1  CTAGAAATACTGCATTATGTTTCAATTTTCTATTTTATGTTATTCAAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATACTGCATTATGTTTCAATTTTCTATTTTATGTTATTCAAAGT  777

seq1  CATTTGTAGTCTGTAACATATAATAAATATATGATTTAACAGAGATGCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAGTCTGTAACATATAATAAATATATGATTTAACAGAGATGCTG  827

seq1  AATATCGTGATTTTATTATTTTAGCTTGTTGGTATGGGAATATTATAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCGTGATTTTATTATTTTAGCTTGTTGGTATGGGAATATTATAGTG  877

seq1  TATATGGATGTATGAAGTGAAAATAATGGTAAATTAAAAAATAACACACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGATGTATGAAGTGAAAATAATGGTAAATTAAAAAATAACACACA  927

seq1  CTTAATTTTATCTATTATTTAAAACTTATGAACAGAGAGCAAACTACTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTTATCTATTATTTAAAACTTATGAACAGAGAGCAAACTACTGT  977

seq1  TTCCTGTTTATCTTTATAAATTATTTTTTAGATATCAATTCGGTACCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTATCTTTATAAATTATTTTTTAGATATCAATTCGGTACCAAA  1027

seq1  CAGTAAGAATGATTGCCAAAACACTGATAAATATAAGACGTTTTGAGAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAATGATTGCCAAAACACTGATAAATATAAGACGTTTTGAGAAC  1077

seq1  TCTGGGCATTAAAGTCTTGAGAAAAGGAGTTTTGGTATTGAAAGCTAATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCATTAAAGTCTTGAGAAAAGGAGTTTTGGTATTGAAAGCTAATC  1127

seq1  CTCTATTCCCTCCTATGAATTC  1170
      ||||||||||||||||||||||
seq2  CTCTATTCCCTCCTATGAATTC  1149


seq1: chr3_45561428_45561632
seq2: B6Ng01-301O04.g_64_268

seq1  GAATTCAGTTTGTCAGTCTTGGCAGTGAACATCTTAACTTAATAAATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGTCAGTCTTGGCAGTGAACATCTTAACTTAATAAATCAC  50

seq1  ACTGCTGGCTTTTGTATGCTTTTAGTTTCACATATAAGCAACATGGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGCTTTTGTATGCTTTTAGTTTCACATATAAGCAACATGGGACT  100

seq1  CCAAAAAAAAGACTTGGCAGGAATCTGAAATTTAATATATATATATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAGACTTGGCAGGAATCTGAAATTTAATATATATATATATAT  150

seq1  ATATATAAATATATATATATATATATATATATATATATATATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATATATATATATATATATATATATATATATATATATATATAT  200

seq1  ATATA  205
      |||||
seq2  ATATA  205


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